Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12750

Experiment: Anaerobic, pH7.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH7.5
2,703,643	+				-2.9
2,703,643	+				-3.7
2,703,643	+				-2.5
2,703,643	+				-2.9
2,703,644	-				-1.4
2,703,675	-				-1.1
2,703,691	-				-1.3
2,703,698	+				-2.7
2,703,698	+				-2.9
2,703,699	-				-2.1
2,703,699	-				-1.9
2,703,699	-				-0.7
2,703,719	+				-2.6
2,703,719	+				-3.5
2,703,720	-				-3.1
2,703,720	-				-2.8
2,703,860	+		ABCV34_RS12740	0.22	-1.4
2,703,940	-		ABCV34_RS12740	0.39	-0.1
2,703,940	-		ABCV34_RS12740	0.39	-3.5
2,703,947	-		ABCV34_RS12740	0.41	-3.1
2,704,001	-		ABCV34_RS12740	0.52	-2.5
2,704,001	-		ABCV34_RS12740	0.52	-3.5
2,704,001	-		ABCV34_RS12740	0.52	-3.9
2,704,001	-		ABCV34_RS12740	0.52	-3.3
2,704,001	-		ABCV34_RS12740	0.52	-4.7
2,704,059	+		ABCV34_RS12740	0.65	-3.3
2,704,177	+		ABCV34_RS12740	0.90	-3.1
2,704,177	+		ABCV34_RS12740	0.90	-3.5
2,704,178	-				-1.9
2,704,178	-				-2.2
2,704,178	-				-2.6
2,704,178	-				-2.7
2,704,178	-				-2.5
2,704,178	-				-3.1
2,704,178	-				-2.7
2,704,178	-				-2.9
2,704,178	-				-2.5
2,704,178	-				-2.5
2,704,178	-				-4.0
2,704,178	-				-1.7
2,704,178	-				-2.2
2,704,178	-				-3.7
2,704,178	-				-2.7
2,704,178	-				-2.2
2,704,178	-				-3.5
2,704,178	-				-3.1
2,704,178	-				-3.5
2,704,178	-				-0.9
2,704,178	-				-3.9
2,704,179	+				-2.2
2,704,179	+				-3.0
2,704,180	-				-2.3
2,704,180	-				-3.7
2,704,180	-				-3.3
2,704,180	-				-2.4
2,704,187	+				-1.1
2,704,187	+				-2.1
2,704,187	+				-2.5
2,704,188	-				-3.1
2,704,275	+		ABCV34_RS12745	0.18	-2.4
2,704,275	+		ABCV34_RS12745	0.18	-2.8
2,704,275	+		ABCV34_RS12745	0.18	-2.6
2,704,275	+		ABCV34_RS12745	0.18	-2.8
2,704,275	+		ABCV34_RS12745	0.18	-2.9
2,704,275	+		ABCV34_RS12745	0.18	-1.7
2,704,275	+		ABCV34_RS12745	0.18	-2.8
2,704,275	+		ABCV34_RS12745	0.18	-3.3
2,704,275	+		ABCV34_RS12745	0.18	-2.2
2,704,275	+		ABCV34_RS12745	0.18	-2.6
2,704,275	+		ABCV34_RS12745	0.18	-2.9
2,704,275	+		ABCV34_RS12745	0.18	-0.6
2,704,275	+		ABCV34_RS12745	0.18	-2.6
2,704,275	+		ABCV34_RS12745	0.18	-2.6
2,704,276	-		ABCV34_RS12745	0.19	-3.0
2,704,276	-		ABCV34_RS12745	0.19	-2.2
2,704,276	-		ABCV34_RS12745	0.19	-1.7
2,704,276	-		ABCV34_RS12745	0.19	-1.9
2,704,276	-		ABCV34_RS12745	0.19	-2.2
2,704,276	-		ABCV34_RS12745	0.19	-2.8
2,704,276	-		ABCV34_RS12745	0.19	-3.5
2,704,276	-		ABCV34_RS12745	0.19	-2.4
2,704,481	+		ABCV34_RS12745	0.88	-2.2
2,704,481	+		ABCV34_RS12745	0.88	-2.5
2,704,481	+		ABCV34_RS12745	0.88	-1.6
2,704,481	+		ABCV34_RS12745	0.88	-2.5
2,704,481	+		ABCV34_RS12745	0.88	-2.7
2,704,481	+		ABCV34_RS12745	0.88	-2.9
2,704,482	-		ABCV34_RS12745	0.88	-3.0
2,704,482	-		ABCV34_RS12745	0.88	-3.3
2,704,482	-		ABCV34_RS12745	0.88	-3.0
2,704,538	+				-1.9
2,704,538	+				-1.6
2,704,538	+				-3.5
2,704,538	+				-3.9
2,704,539	-				-1.4
2,704,539	-				-2.1
2,704,539	-				-3.7
2,704,568	+				-1.8
2,704,573	+				-3.0
2,704,591	+				-3.6
2,704,591	+				-2.7
2,704,844	-		ABCV34_RS12750	0.29	-2.7
2,704,963	-		ABCV34_RS12750	0.44	-2.7
2,705,162	+		ABCV34_RS12750	0.68	-2.5
2,705,168	+		ABCV34_RS12750	0.68	-2.3
2,705,418	+				-3.3
2,705,418	+				-2.2
2,705,418	+				-0.6
2,705,418	+				-4.4
2,705,418	+				-3.7
2,705,418	+				-2.7
2,705,418	+				-2.8
2,705,419	-				-2.6
2,705,419	-				-2.7
2,705,419	-				-2.1
2,705,419	-				-3.2
2,705,419	-				-2.8
2,705,419	-				-2.1
2,705,449	+				-2.3
2,705,452	+				-3.2
2,705,466	-				-4.2
2,705,492	+				-2.8
2,705,492	+				-2.4
2,705,499	+				-2.4
2,705,499	+				-1.2
2,705,499	+				-2.6
2,705,499	+				-3.9
2,705,499	+				-2.6
2,705,499	+				-2.5
2,705,499	+				-4.2
2,705,499	+				-2.2
2,705,499	+				-1.5
2,705,499	+				-2.5
2,705,499	+				-2.5
2,705,499	+				-2.5
2,705,499	+				-2.7
2,705,499	+				-2.3
2,705,499	+				-3.2
2,705,499	+				-2.2
2,705,499	+				-3.1
2,705,499	+				-2.2
2,705,499	+				-3.5
2,705,499	+				-2.1
2,705,500	-				-2.7
2,705,500	-				-4.0
2,705,500	-				-3.6
2,705,500	-				-2.8
2,705,500	-				-3.1
2,705,500	-				-2.9
2,705,500	-				-2.3
2,705,500	-				-2.5
2,705,500	-				-2.0
2,705,500	-				-2.6
2,705,500	-				-2.5
2,705,500	-				-2.7
2,705,500	-				-2.4
2,705,500	-				-0.7
2,705,500	-				-2.5
2,705,500	-				-2.4
2,705,500	-				-2.8
2,705,500	-				-3.2
2,705,500	-				-1.8
2,705,500	-				-2.9
2,705,570	+				-2.8
2,705,570	+				-3.5
2,705,571	-				-1.9
2,705,571	-				-3.1
2,705,571	-				-2.2
2,705,571	-				-2.1
2,705,571	-				-2.6
2,705,571	-				-3.1
2,705,571	-				-2.5
2,705,601	-				-2.0
2,705,668	-				-2.4
2,706,051	+		ABCV34_RS12755	0.30	-3.1
2,706,051	+		ABCV34_RS12755	0.30	-2.3
2,706,051	+		ABCV34_RS12755	0.30	-2.1
2,706,052	-		ABCV34_RS12755	0.30	-2.9
2,706,052	-		ABCV34_RS12755	0.30	-2.4
2,706,052	-		ABCV34_RS12755	0.30	-1.4
2,706,052	-		ABCV34_RS12755	0.30	-2.9
2,706,052	-		ABCV34_RS12755	0.30	-3.6
2,706,052	-		ABCV34_RS12755	0.30	-2.8
2,706,222	+		ABCV34_RS12755	0.41	-2.0
2,706,222	+		ABCV34_RS12755	0.41	-3.1
2,706,222	+		ABCV34_RS12755	0.41	-1.7
2,706,222	+		ABCV34_RS12755	0.41	-1.8
2,706,223	-		ABCV34_RS12755	0.41	-3.9
2,706,297	+		ABCV34_RS12755	0.46	-2.3
2,706,297	+		ABCV34_RS12755	0.46	-2.0
2,706,297	+		ABCV34_RS12755	0.46	-3.4
2,706,297	+		ABCV34_RS12755	0.46	-2.4
2,706,297	+		ABCV34_RS12755	0.46	-3.2
2,706,297	+		ABCV34_RS12755	0.46	-3.0
2,706,297	+		ABCV34_RS12755	0.46	-3.4
2,706,297	+		ABCV34_RS12755	0.46	-3.4
2,706,297	+		ABCV34_RS12755	0.46	-3.0
2,706,298	-		ABCV34_RS12755	0.46	-4.1
2,706,298	-		ABCV34_RS12755	0.46	-2.7
2,706,298	-		ABCV34_RS12755	0.46	-1.7
2,706,298	-		ABCV34_RS12755	0.46	-3.0
2,706,298	-		ABCV34_RS12755	0.46	-2.1
2,706,298	-		ABCV34_RS12755	0.46	-3.0