Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06950

Experiment: Anaerobic, pH7.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS06940 and ABCV34_RS06945 overlap by 4 nucleotidesABCV34_RS06945 and ABCV34_RS06950 are separated by 15 nucleotidesABCV34_RS06950 and ABCV34_RS06955 overlap by 4 nucleotides ABCV34_RS06940: ABCV34_RS06940 - NIPSNAP family protein, at 1,496,741 to 1,497,088 _RS06940 ABCV34_RS06945: ABCV34_RS06945 - SDR family oxidoreductase, at 1,497,085 to 1,497,885 _RS06945 ABCV34_RS06950: ABCV34_RS06950 - branched-chain amino acid ABC transporter permease, at 1,497,901 to 1,498,752 _RS06950 ABCV34_RS06955: ABCV34_RS06955 - branched-chain amino acid ABC transporter permease, at 1,498,749 to 1,499,747 _RS06955 Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1496.930 kb on + strand, within ABCV34_RS06940at 1496.931 kb on - strand, within ABCV34_RS06940at 1496.996 kb on + strand, within ABCV34_RS06940at 1496.997 kb on - strand, within ABCV34_RS06940at 1497.052 kb on + strand, within ABCV34_RS06940at 1497.052 kb on + strand, within ABCV34_RS06940at 1497.348 kb on + strand, within ABCV34_RS06945at 1497.349 kb on - strand, within ABCV34_RS06945at 1497.428 kb on + strand, within ABCV34_RS06945at 1497.428 kb on + strand, within ABCV34_RS06945at 1497.429 kb on - strand, within ABCV34_RS06945at 1497.429 kb on - strand, within ABCV34_RS06945at 1497.429 kb on - strand, within ABCV34_RS06945at 1497.429 kb on - strand, within ABCV34_RS06945at 1497.547 kb on + strand, within ABCV34_RS06945at 1497.548 kb on - strand, within ABCV34_RS06945at 1497.643 kb on + strand, within ABCV34_RS06945at 1497.643 kb on + strand, within ABCV34_RS06945at 1497.644 kb on - strand, within ABCV34_RS06945at 1497.644 kb on - strand, within ABCV34_RS06945at 1497.683 kb on - strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.790 kb on + strand, within ABCV34_RS06945at 1497.791 kb on - strand, within ABCV34_RS06945at 1497.791 kb on - strand, within ABCV34_RS06945at 1497.883 kb on + strandat 1497.883 kb on + strandat 1497.884 kb on - strandat 1497.884 kb on - strandat 1497.884 kb on - strandat 1497.934 kb on + strandat 1497.934 kb on + strandat 1497.980 kb on - strandat 1497.980 kb on - strandat 1498.019 kb on + strand, within ABCV34_RS06950at 1498.019 kb on + strand, within ABCV34_RS06950at 1498.020 kb on - strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.021 kb on + strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.022 kb on - strand, within ABCV34_RS06950at 1498.036 kb on + strand, within ABCV34_RS06950at 1498.036 kb on + strand, within ABCV34_RS06950at 1498.036 kb on + strand, within ABCV34_RS06950at 1498.037 kb on - strand, within ABCV34_RS06950at 1498.037 kb on - strand, within ABCV34_RS06950at 1498.037 kb on - strand, within ABCV34_RS06950at 1498.037 kb on - strand, within ABCV34_RS06950at 1498.037 kb on - strand, within ABCV34_RS06950at 1498.046 kb on - strand, within ABCV34_RS06950at 1498.156 kb on + strand, within ABCV34_RS06950at 1498.182 kb on + strand, within ABCV34_RS06950at 1498.182 kb on + strand, within ABCV34_RS06950at 1498.183 kb on - strand, within ABCV34_RS06950at 1498.444 kb on - strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.660 kb on + strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.661 kb on - strand, within ABCV34_RS06950at 1498.792 kb on + strandat 1498.957 kb on + strand, within ABCV34_RS06955at 1498.958 kb on - strand, within ABCV34_RS06955at 1498.965 kb on + strand, within ABCV34_RS06955at 1499.131 kb on - strand, within ABCV34_RS06955at 1499.521 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.568 kb on + strand, within ABCV34_RS06955at 1499.569 kb on - strand, within ABCV34_RS06955at 1499.569 kb on - strand, within ABCV34_RS06955at 1499.569 kb on - strand, within ABCV34_RS06955at 1499.569 kb on - strand, within ABCV34_RS06955at 1499.650 kb on + strandat 1499.650 kb on + strandat 1499.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH7.5
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1,496,930 + ABCV34_RS06940 0.54 -2.2
1,496,931 - ABCV34_RS06940 0.55 -2.5
1,496,996 + ABCV34_RS06940 0.73 -2.6
1,496,997 - ABCV34_RS06940 0.74 -1.8
1,497,052 + ABCV34_RS06940 0.89 -2.6
1,497,052 + ABCV34_RS06940 0.89 -2.7
1,497,348 + ABCV34_RS06945 0.33 -2.8
1,497,349 - ABCV34_RS06945 0.33 -2.3
1,497,428 + ABCV34_RS06945 0.43 -3.0
1,497,428 + ABCV34_RS06945 0.43 -2.5
1,497,429 - ABCV34_RS06945 0.43 -1.1
1,497,429 - ABCV34_RS06945 0.43 -2.8
1,497,429 - ABCV34_RS06945 0.43 -1.6
1,497,429 - ABCV34_RS06945 0.43 -2.7
1,497,547 + ABCV34_RS06945 0.58 -1.6
1,497,548 - ABCV34_RS06945 0.58 -2.9
1,497,643 + ABCV34_RS06945 0.70 -2.7
1,497,643 + ABCV34_RS06945 0.70 -3.8
1,497,644 - ABCV34_RS06945 0.70 -2.5
1,497,644 - ABCV34_RS06945 0.70 -2.7
1,497,683 - ABCV34_RS06945 0.75 -3.4
1,497,790 + ABCV34_RS06945 0.88 -1.9
1,497,790 + ABCV34_RS06945 0.88 -1.7
1,497,790 + ABCV34_RS06945 0.88 -1.9
1,497,790 + ABCV34_RS06945 0.88 -2.3
1,497,790 + ABCV34_RS06945 0.88 -2.9
1,497,790 + ABCV34_RS06945 0.88 -2.4
1,497,790 + ABCV34_RS06945 0.88 -2.1
1,497,790 + ABCV34_RS06945 0.88 -3.2
1,497,790 + ABCV34_RS06945 0.88 -2.4
1,497,790 + ABCV34_RS06945 0.88 -0.1
1,497,791 - ABCV34_RS06945 0.88 -2.7
1,497,791 - ABCV34_RS06945 0.88 -2.8
1,497,883 + -2.1
1,497,883 + -3.0
1,497,884 - -2.8
1,497,884 - -3.6
1,497,884 - -3.2
1,497,934 + -1.7
1,497,934 + -3.6
1,497,980 - -3.3
1,497,980 - -2.6
1,498,019 + ABCV34_RS06950 0.14 -2.4
1,498,019 + ABCV34_RS06950 0.14 -3.2
1,498,020 - ABCV34_RS06950 0.14 -2.7
1,498,021 + ABCV34_RS06950 0.14 -4.7
1,498,021 + ABCV34_RS06950 0.14 -2.4
1,498,021 + ABCV34_RS06950 0.14 -2.1
1,498,021 + ABCV34_RS06950 0.14 -2.6
1,498,021 + ABCV34_RS06950 0.14 -2.5
1,498,021 + ABCV34_RS06950 0.14 -2.3
1,498,021 + ABCV34_RS06950 0.14 -2.5
1,498,021 + ABCV34_RS06950 0.14 -2.2
1,498,021 + ABCV34_RS06950 0.14 -2.6
1,498,021 + ABCV34_RS06950 0.14 -2.2
1,498,021 + ABCV34_RS06950 0.14 -2.4
1,498,021 + ABCV34_RS06950 0.14 -2.4
1,498,021 + ABCV34_RS06950 0.14 -2.8
1,498,021 + ABCV34_RS06950 0.14 -3.0
1,498,021 + ABCV34_RS06950 0.14 -2.5
1,498,021 + ABCV34_RS06950 0.14 -3.0
1,498,021 + ABCV34_RS06950 0.14 -4.4
1,498,021 + ABCV34_RS06950 0.14 -3.3
1,498,021 + ABCV34_RS06950 0.14 -2.2
1,498,021 + ABCV34_RS06950 0.14 -2.1
1,498,021 + ABCV34_RS06950 0.14 -3.4
1,498,021 + ABCV34_RS06950 0.14 -0.1
1,498,022 - ABCV34_RS06950 0.14 -2.9
1,498,022 - ABCV34_RS06950 0.14 -4.7
1,498,022 - ABCV34_RS06950 0.14 -1.4
1,498,022 - ABCV34_RS06950 0.14 -2.4
1,498,022 - ABCV34_RS06950 0.14 -4.7
1,498,022 - ABCV34_RS06950 0.14 -3.0
1,498,022 - ABCV34_RS06950 0.14 -2.8
1,498,022 - ABCV34_RS06950 0.14 -2.5
1,498,022 - ABCV34_RS06950 0.14 -2.5
1,498,022 - ABCV34_RS06950 0.14 -2.7
1,498,022 - ABCV34_RS06950 0.14 -1.7
1,498,022 - ABCV34_RS06950 0.14 -1.4
1,498,022 - ABCV34_RS06950 0.14 -2.2
1,498,022 - ABCV34_RS06950 0.14 -2.7
1,498,022 - ABCV34_RS06950 0.14 -1.8
1,498,022 - ABCV34_RS06950 0.14 -2.6
1,498,022 - ABCV34_RS06950 0.14 -2.2
1,498,022 - ABCV34_RS06950 0.14 -3.8
1,498,022 - ABCV34_RS06950 0.14 -1.6
1,498,022 - ABCV34_RS06950 0.14 -3.0
1,498,022 - ABCV34_RS06950 0.14 -2.2
1,498,022 - ABCV34_RS06950 0.14 -2.6
1,498,022 - ABCV34_RS06950 0.14 -2.1
1,498,022 - ABCV34_RS06950 0.14 -2.9
1,498,022 - ABCV34_RS06950 0.14 -3.2
1,498,022 - ABCV34_RS06950 0.14 -3.4
1,498,022 - ABCV34_RS06950 0.14 -3.1
1,498,036 + ABCV34_RS06950 0.16 -2.8
1,498,036 + ABCV34_RS06950 0.16 -2.9
1,498,036 + ABCV34_RS06950 0.16 -3.2
1,498,037 - ABCV34_RS06950 0.16 -3.1
1,498,037 - ABCV34_RS06950 0.16 -2.9
1,498,037 - ABCV34_RS06950 0.16 -3.9
1,498,037 - ABCV34_RS06950 0.16 -2.4
1,498,037 - ABCV34_RS06950 0.16 -1.8
1,498,046 - ABCV34_RS06950 0.17 -2.4
1,498,156 + ABCV34_RS06950 0.30 -2.6
1,498,182 + ABCV34_RS06950 0.33 -1.1
1,498,182 + ABCV34_RS06950 0.33 -2.2
1,498,183 - ABCV34_RS06950 0.33 -2.5
1,498,444 - ABCV34_RS06950 0.64 -2.4
1,498,660 + ABCV34_RS06950 0.89 -2.4
1,498,660 + ABCV34_RS06950 0.89 -2.8
1,498,660 + ABCV34_RS06950 0.89 -1.0
1,498,660 + ABCV34_RS06950 0.89 -2.7
1,498,660 + ABCV34_RS06950 0.89 -3.0
1,498,660 + ABCV34_RS06950 0.89 -2.6
1,498,660 + ABCV34_RS06950 0.89 -3.6
1,498,660 + ABCV34_RS06950 0.89 -2.5
1,498,661 - ABCV34_RS06950 0.89 -1.9
1,498,661 - ABCV34_RS06950 0.89 -2.1
1,498,661 - ABCV34_RS06950 0.89 -2.8
1,498,661 - ABCV34_RS06950 0.89 -1.2
1,498,661 - ABCV34_RS06950 0.89 -1.4
1,498,661 - ABCV34_RS06950 0.89 -2.7
1,498,661 - ABCV34_RS06950 0.89 -2.8
1,498,661 - ABCV34_RS06950 0.89 -3.7
1,498,661 - ABCV34_RS06950 0.89 -3.1
1,498,661 - ABCV34_RS06950 0.89 -2.5
1,498,661 - ABCV34_RS06950 0.89 -2.9
1,498,661 - ABCV34_RS06950 0.89 -1.9
1,498,661 - ABCV34_RS06950 0.89 -2.1
1,498,792 + -2.7
1,498,957 + ABCV34_RS06955 0.21 -2.5
1,498,958 - ABCV34_RS06955 0.21 -2.4
1,498,965 + ABCV34_RS06955 0.22 -2.7
1,499,131 - ABCV34_RS06955 0.38 -2.6
1,499,521 + ABCV34_RS06955 0.77 -1.7
1,499,568 + ABCV34_RS06955 0.82 -2.2
1,499,568 + ABCV34_RS06955 0.82 -2.4
1,499,568 + ABCV34_RS06955 0.82 -2.5
1,499,568 + ABCV34_RS06955 0.82 -2.8
1,499,568 + ABCV34_RS06955 0.82 -2.5
1,499,568 + ABCV34_RS06955 0.82 -2.9
1,499,568 + ABCV34_RS06955 0.82 -2.2
1,499,569 - ABCV34_RS06955 0.82 -5.2
1,499,569 - ABCV34_RS06955 0.82 -2.6
1,499,569 - ABCV34_RS06955 0.82 -3.0
1,499,569 - ABCV34_RS06955 0.82 -4.0
1,499,650 + -2.6
1,499,650 + -3.4
1,499,651 - -3.2

Or see this region's nucleotide sequence