Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02145

Experiment: Anaerobic, pH7.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS02140 and ABCV34_RS02145 are separated by 0 nucleotidesABCV34_RS02145 and ABCV34_RS02150 are separated by 135 nucleotidesABCV34_RS02150 and ABCV34_RS02155 are separated by 146 nucleotides ABCV34_RS02140: ABCV34_RS02140 - translational GTPase TypA, at 480,389 to 482,209 _RS02140 ABCV34_RS02145: ABCV34_RS02145 - DMT family transporter, at 482,210 to 483,124 _RS02145 ABCV34_RS02150: ABCV34_RS02150 - helix-turn-helix domain-containing protein, at 483,260 to 483,934 _RS02150 ABCV34_RS02155: ABCV34_RS02155 - catalase, at 484,081 to 485,517 _RS02155 Position (kb) 482 483 484Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 482.162 kb on + strandat 482.253 kb on - strandat 482.271 kb on + strandat 482.271 kb on + strandat 482.297 kb on + strandat 482.400 kb on + strand, within ABCV34_RS02145at 482.400 kb on + strand, within ABCV34_RS02145at 482.400 kb on + strand, within ABCV34_RS02145at 482.400 kb on + strand, within ABCV34_RS02145at 482.400 kb on + strand, within ABCV34_RS02145at 482.400 kb on + strand, within ABCV34_RS02145at 482.401 kb on - strand, within ABCV34_RS02145at 482.583 kb on + strand, within ABCV34_RS02145at 482.583 kb on + strand, within ABCV34_RS02145at 482.583 kb on + strand, within ABCV34_RS02145at 482.593 kb on - strand, within ABCV34_RS02145at 482.673 kb on - strand, within ABCV34_RS02145at 482.673 kb on - strand, within ABCV34_RS02145at 482.838 kb on + strand, within ABCV34_RS02145at 482.838 kb on + strand, within ABCV34_RS02145at 482.838 kb on + strand, within ABCV34_RS02145at 482.838 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.934 kb on + strand, within ABCV34_RS02145at 482.935 kb on - strand, within ABCV34_RS02145at 482.935 kb on - strand, within ABCV34_RS02145at 482.935 kb on - strand, within ABCV34_RS02145at 482.935 kb on - strand, within ABCV34_RS02145at 482.935 kb on - strand, within ABCV34_RS02145at 482.935 kb on - strand, within ABCV34_RS02145at 482.978 kb on + strand, within ABCV34_RS02145at 482.986 kb on - strand, within ABCV34_RS02145at 483.178 kb on - strandat 483.192 kb on + strandat 483.192 kb on + strandat 483.193 kb on - strandat 483.193 kb on - strandat 483.426 kb on + strand, within ABCV34_RS02150at 483.426 kb on + strand, within ABCV34_RS02150at 483.426 kb on + strand, within ABCV34_RS02150at 483.427 kb on - strand, within ABCV34_RS02150at 483.563 kb on + strand, within ABCV34_RS02150at 483.563 kb on + strand, within ABCV34_RS02150at 483.563 kb on + strand, within ABCV34_RS02150at 483.563 kb on + strand, within ABCV34_RS02150at 483.563 kb on + strand, within ABCV34_RS02150at 483.564 kb on - strand, within ABCV34_RS02150at 483.564 kb on - strand, within ABCV34_RS02150at 483.564 kb on - strand, within ABCV34_RS02150at 483.750 kb on + strand, within ABCV34_RS02150at 483.750 kb on + strand, within ABCV34_RS02150at 483.750 kb on + strand, within ABCV34_RS02150at 483.897 kb on + strandat 483.897 kb on + strandat 483.898 kb on - strandat 483.898 kb on - strandat 483.898 kb on - strandat 483.901 kb on + strandat 483.901 kb on + strandat 483.901 kb on + strandat 483.901 kb on + strandat 483.901 kb on + strandat 483.901 kb on + strandat 483.901 kb on + strandat 483.902 kb on - strandat 483.902 kb on - strandat 483.902 kb on - strandat 483.902 kb on - strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.937 kb on + strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.938 kb on - strandat 483.973 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH7.5
remove
482,162 + -1.9
482,253 - -2.5
482,271 + -3.3
482,271 + -0.5
482,297 + -4.0
482,400 + ABCV34_RS02145 0.21 -3.2
482,400 + ABCV34_RS02145 0.21 -1.5
482,400 + ABCV34_RS02145 0.21 -2.7
482,400 + ABCV34_RS02145 0.21 -4.7
482,400 + ABCV34_RS02145 0.21 -2.7
482,400 + ABCV34_RS02145 0.21 -2.6
482,401 - ABCV34_RS02145 0.21 -2.9
482,583 + ABCV34_RS02145 0.41 -3.5
482,583 + ABCV34_RS02145 0.41 -2.9
482,583 + ABCV34_RS02145 0.41 -2.7
482,593 - ABCV34_RS02145 0.42 -4.2
482,673 - ABCV34_RS02145 0.51 +1.1
482,673 - ABCV34_RS02145 0.51 -2.1
482,838 + ABCV34_RS02145 0.69 -0.9
482,838 + ABCV34_RS02145 0.69 -3.3
482,838 + ABCV34_RS02145 0.69 -3.0
482,838 + ABCV34_RS02145 0.69 -2.3
482,934 + ABCV34_RS02145 0.79 -2.9
482,934 + ABCV34_RS02145 0.79 -2.3
482,934 + ABCV34_RS02145 0.79 -2.4
482,934 + ABCV34_RS02145 0.79 -2.6
482,934 + ABCV34_RS02145 0.79 -4.4
482,934 + ABCV34_RS02145 0.79 -1.7
482,934 + ABCV34_RS02145 0.79 -3.7
482,934 + ABCV34_RS02145 0.79 -2.1
482,934 + ABCV34_RS02145 0.79 -3.5
482,934 + ABCV34_RS02145 0.79 -5.3
482,935 - ABCV34_RS02145 0.79 -4.9
482,935 - ABCV34_RS02145 0.79 -2.5
482,935 - ABCV34_RS02145 0.79 -3.2
482,935 - ABCV34_RS02145 0.79 -1.7
482,935 - ABCV34_RS02145 0.79 -2.6
482,935 - ABCV34_RS02145 0.79 -3.9
482,978 + ABCV34_RS02145 0.84 -5.1
482,986 - ABCV34_RS02145 0.85 -5.8
483,178 - -2.4
483,192 + -0.5
483,192 + -4.5
483,193 - -1.5
483,193 - -1.9
483,426 + ABCV34_RS02150 0.25 -4.5
483,426 + ABCV34_RS02150 0.25 -1.9
483,426 + ABCV34_RS02150 0.25 -2.5
483,427 - ABCV34_RS02150 0.25 -3.1
483,563 + ABCV34_RS02150 0.45 -3.2
483,563 + ABCV34_RS02150 0.45 -2.5
483,563 + ABCV34_RS02150 0.45 -1.1
483,563 + ABCV34_RS02150 0.45 -2.7
483,563 + ABCV34_RS02150 0.45 -3.1
483,564 - ABCV34_RS02150 0.45 -3.2
483,564 - ABCV34_RS02150 0.45 -2.5
483,564 - ABCV34_RS02150 0.45 -2.6
483,750 + ABCV34_RS02150 0.73 -2.3
483,750 + ABCV34_RS02150 0.73 -4.0
483,750 + ABCV34_RS02150 0.73 -3.3
483,897 + -2.3
483,897 + -3.2
483,898 - -4.5
483,898 - -3.3
483,898 - -3.9
483,901 + -3.1
483,901 + -3.5
483,901 + -4.7
483,901 + -2.4
483,901 + -3.9
483,901 + -2.5
483,901 + -2.1
483,902 - -1.5
483,902 - -1.9
483,902 - -1.9
483,902 - -2.6
483,937 + -3.4
483,937 + -2.9
483,937 + -1.7
483,937 + -2.5
483,937 + -3.2
483,937 + -2.0
483,937 + -2.3
483,937 + -4.5
483,938 - -0.2
483,938 - -0.9
483,938 - -2.1
483,938 - -3.1
483,938 - -1.9
483,938 - -2.0
483,938 - -2.7
483,938 - -2.2
483,938 - -1.2
483,938 - -3.4
483,938 - -3.3
483,938 - -4.5
483,938 - -3.1
483,938 - -2.4
483,973 + -1.3

Or see this region's nucleotide sequence