Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01795

Experiment: Anaerobic, pH7.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01790 and ABCV34_RS01795 are separated by 164 nucleotidesABCV34_RS01795 and ABCV34_RS01800 are separated by 10 nucleotides ABCV34_RS01790: ABCV34_RS01790 - LysR substrate-binding domain-containing protein, at 389,149 to 390,039 _RS01790 ABCV34_RS01795: ABCV34_RS01795 - acyl-CoA dehydrogenase, at 390,204 to 391,391 _RS01795 ABCV34_RS01800: ABCV34_RS01800 - CaiB/BaiF CoA-transferase family protein, at 391,402 to 392,622 _RS01800 Position (kb) 390 391 392Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 389.463 kb on + strand, within ABCV34_RS01790at 389.463 kb on + strand, within ABCV34_RS01790at 389.603 kb on + strand, within ABCV34_RS01790at 389.603 kb on + strand, within ABCV34_RS01790at 389.604 kb on - strand, within ABCV34_RS01790at 389.604 kb on - strand, within ABCV34_RS01790at 389.604 kb on - strand, within ABCV34_RS01790at 389.604 kb on - strand, within ABCV34_RS01790at 389.604 kb on - strand, within ABCV34_RS01790at 389.604 kb on - strand, within ABCV34_RS01790at 389.689 kb on - strand, within ABCV34_RS01790at 389.740 kb on + strand, within ABCV34_RS01790at 389.835 kb on - strand, within ABCV34_RS01790at 390.066 kb on - strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.075 kb on + strandat 390.076 kb on - strandat 390.076 kb on - strandat 390.076 kb on - strandat 390.076 kb on - strandat 390.076 kb on - strandat 390.076 kb on - strandat 390.100 kb on - strandat 390.103 kb on + strandat 390.103 kb on + strandat 390.104 kb on - strandat 390.118 kb on + strandat 390.423 kb on + strand, within ABCV34_RS01795at 390.424 kb on - strand, within ABCV34_RS01795at 390.424 kb on - strand, within ABCV34_RS01795at 390.438 kb on - strand, within ABCV34_RS01795at 390.444 kb on + strand, within ABCV34_RS01795at 390.444 kb on + strand, within ABCV34_RS01795at 390.444 kb on + strand, within ABCV34_RS01795at 390.444 kb on + strand, within ABCV34_RS01795at 390.444 kb on + strand, within ABCV34_RS01795at 390.444 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.445 kb on - strand, within ABCV34_RS01795at 390.453 kb on + strand, within ABCV34_RS01795at 390.454 kb on - strand, within ABCV34_RS01795at 390.576 kb on + strand, within ABCV34_RS01795at 390.576 kb on + strand, within ABCV34_RS01795at 390.577 kb on - strand, within ABCV34_RS01795at 390.577 kb on - strand, within ABCV34_RS01795at 390.690 kb on + strand, within ABCV34_RS01795at 391.005 kb on + strand, within ABCV34_RS01795at 391.005 kb on + strand, within ABCV34_RS01795at 391.006 kb on - strand, within ABCV34_RS01795at 391.006 kb on - strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.023 kb on + strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.024 kb on - strand, within ABCV34_RS01795at 391.313 kb on + strandat 391.313 kb on + strandat 391.313 kb on + strandat 391.313 kb on + strandat 391.314 kb on - strandat 391.314 kb on - strandat 391.314 kb on - strandat 391.314 kb on - strandat 391.314 kb on - strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.318 kb on - strandat 391.318 kb on - strandat 391.318 kb on - strandat 391.318 kb on - strandat 391.318 kb on - strandat 391.385 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.389 kb on + strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.390 kb on - strandat 391.531 kb on - strand, within ABCV34_RS01800at 391.594 kb on + strand, within ABCV34_RS01800at 391.594 kb on + strand, within ABCV34_RS01800at 391.594 kb on + strand, within ABCV34_RS01800at 391.594 kb on + strand, within ABCV34_RS01800at 391.595 kb on - strand, within ABCV34_RS01800at 391.595 kb on - strand, within ABCV34_RS01800at 391.595 kb on - strand, within ABCV34_RS01800at 391.595 kb on - strand, within ABCV34_RS01800at 391.595 kb on - strand, within ABCV34_RS01800at 391.595 kb on - strand, within ABCV34_RS01800at 391.597 kb on + strand, within ABCV34_RS01800at 391.597 kb on + strand, within ABCV34_RS01800at 391.597 kb on + strand, within ABCV34_RS01800at 391.597 kb on + strand, within ABCV34_RS01800at 391.597 kb on + strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.598 kb on - strand, within ABCV34_RS01800at 391.608 kb on + strand, within ABCV34_RS01800at 391.732 kb on + strand, within ABCV34_RS01800at 391.744 kb on + strand, within ABCV34_RS01800at 391.745 kb on - strand, within ABCV34_RS01800at 391.745 kb on - strand, within ABCV34_RS01800at 391.745 kb on - strand, within ABCV34_RS01800at 391.745 kb on - strand, within ABCV34_RS01800at 391.745 kb on - strand, within ABCV34_RS01800at 391.745 kb on - strand, within ABCV34_RS01800at 391.759 kb on - strand, within ABCV34_RS01800at 391.759 kb on - strand, within ABCV34_RS01800at 391.759 kb on - strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.780 kb on + strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.781 kb on - strand, within ABCV34_RS01800at 391.816 kb on + strand, within ABCV34_RS01800at 391.834 kb on + strand, within ABCV34_RS01800at 391.954 kb on + strand, within ABCV34_RS01800at 391.955 kb on - strand, within ABCV34_RS01800at 391.955 kb on - strand, within ABCV34_RS01800at 391.955 kb on - strand, within ABCV34_RS01800at 391.955 kb on - strand, within ABCV34_RS01800at 391.955 kb on - strand, within ABCV34_RS01800at 392.006 kb on + strand, within ABCV34_RS01800at 392.006 kb on + strand, within ABCV34_RS01800at 392.006 kb on + strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.007 kb on - strand, within ABCV34_RS01800at 392.074 kb on + strand, within ABCV34_RS01800at 392.074 kb on + strand, within ABCV34_RS01800at 392.074 kb on + strand, within ABCV34_RS01800at 392.074 kb on + strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.075 kb on - strand, within ABCV34_RS01800at 392.135 kb on - strand, within ABCV34_RS01800at 392.161 kb on + strand, within ABCV34_RS01800at 392.161 kb on + strand, within ABCV34_RS01800at 392.161 kb on + strand, within ABCV34_RS01800at 392.161 kb on + strand, within ABCV34_RS01800at 392.161 kb on + strand, within ABCV34_RS01800at 392.162 kb on - strand, within ABCV34_RS01800at 392.162 kb on - strand, within ABCV34_RS01800at 392.326 kb on - strand, within ABCV34_RS01800

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH7.5
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389,463 + ABCV34_RS01790 0.35 -0.6
389,463 + ABCV34_RS01790 0.35 -2.0
389,603 + ABCV34_RS01790 0.51 -2.3
389,603 + ABCV34_RS01790 0.51 -2.6
389,604 - ABCV34_RS01790 0.51 -1.3
389,604 - ABCV34_RS01790 0.51 -2.7
389,604 - ABCV34_RS01790 0.51 -2.0
389,604 - ABCV34_RS01790 0.51 -3.1
389,604 - ABCV34_RS01790 0.51 -2.9
389,604 - ABCV34_RS01790 0.51 -2.6
389,689 - ABCV34_RS01790 0.61 -2.5
389,740 + ABCV34_RS01790 0.66 -2.6
389,835 - ABCV34_RS01790 0.77 -2.8
390,066 - -3.1
390,075 + -1.6
390,075 + -3.3
390,075 + -3.3
390,075 + -3.1
390,075 + -2.0
390,075 + -2.8
390,075 + -2.6
390,075 + -1.3
390,075 + -2.8
390,075 + -1.8
390,075 + -3.6
390,076 - -2.2
390,076 - -1.7
390,076 - -3.1
390,076 - -2.4
390,076 - -2.4
390,076 - -2.0
390,100 - -2.4
390,103 + -4.0
390,103 + -2.7
390,104 - -2.3
390,118 + -2.0
390,423 + ABCV34_RS01795 0.18 -2.0
390,424 - ABCV34_RS01795 0.19 -2.7
390,424 - ABCV34_RS01795 0.19 -2.6
390,438 - ABCV34_RS01795 0.20 -2.7
390,444 + ABCV34_RS01795 0.20 -2.6
390,444 + ABCV34_RS01795 0.20 -2.5
390,444 + ABCV34_RS01795 0.20 -0.4
390,444 + ABCV34_RS01795 0.20 -1.4
390,444 + ABCV34_RS01795 0.20 -2.9
390,444 - ABCV34_RS01795 0.20 -1.6
390,445 - ABCV34_RS01795 0.20 -2.1
390,445 - ABCV34_RS01795 0.20 -1.8
390,445 - ABCV34_RS01795 0.20 -2.3
390,445 - ABCV34_RS01795 0.20 -3.6
390,445 - ABCV34_RS01795 0.20 -2.7
390,445 - ABCV34_RS01795 0.20 -0.7
390,445 - ABCV34_RS01795 0.20 -0.9
390,445 - ABCV34_RS01795 0.20 -3.1
390,445 - ABCV34_RS01795 0.20 -1.8
390,445 - ABCV34_RS01795 0.20 +0.6
390,445 - ABCV34_RS01795 0.20 -1.3
390,445 - ABCV34_RS01795 0.20 -2.3
390,445 - ABCV34_RS01795 0.20 -2.6
390,453 + ABCV34_RS01795 0.21 -2.3
390,454 - ABCV34_RS01795 0.21 -4.1
390,576 + ABCV34_RS01795 0.31 -2.8
390,576 + ABCV34_RS01795 0.31 -2.3
390,577 - ABCV34_RS01795 0.31 -2.6
390,577 - ABCV34_RS01795 0.31 -2.0
390,690 + ABCV34_RS01795 0.41 -2.6
391,005 + ABCV34_RS01795 0.67 -3.1
391,005 + ABCV34_RS01795 0.67 -3.8
391,006 - ABCV34_RS01795 0.68 -2.3
391,006 - ABCV34_RS01795 0.68 -1.9
391,023 + ABCV34_RS01795 0.69 -1.8
391,023 + ABCV34_RS01795 0.69 -3.5
391,023 + ABCV34_RS01795 0.69 +0.0
391,023 + ABCV34_RS01795 0.69 -3.5
391,023 + ABCV34_RS01795 0.69 -2.7
391,023 + ABCV34_RS01795 0.69 -1.3
391,023 + ABCV34_RS01795 0.69 -3.3
391,023 + ABCV34_RS01795 0.69 -1.4
391,023 + ABCV34_RS01795 0.69 -2.1
391,023 + ABCV34_RS01795 0.69 -3.3
391,023 + ABCV34_RS01795 0.69 -2.8
391,023 + ABCV34_RS01795 0.69 -1.0
391,023 + ABCV34_RS01795 0.69 -2.8
391,023 + ABCV34_RS01795 0.69 -2.6
391,024 - ABCV34_RS01795 0.69 -2.1
391,024 - ABCV34_RS01795 0.69 -2.3
391,024 - ABCV34_RS01795 0.69 -2.9
391,024 - ABCV34_RS01795 0.69 -0.3
391,024 - ABCV34_RS01795 0.69 -2.3
391,024 - ABCV34_RS01795 0.69 -2.6
391,024 - ABCV34_RS01795 0.69 -2.9
391,024 - ABCV34_RS01795 0.69 -1.0
391,024 - ABCV34_RS01795 0.69 -2.8
391,024 - ABCV34_RS01795 0.69 -3.4
391,024 - ABCV34_RS01795 0.69 -2.7
391,024 - ABCV34_RS01795 0.69 -1.9
391,024 - ABCV34_RS01795 0.69 -2.0
391,024 - ABCV34_RS01795 0.69 -2.6
391,313 + -1.4
391,313 + -2.7
391,313 + -3.0
391,313 + -1.9
391,314 - -2.1
391,314 - -2.2
391,314 - -2.8
391,314 - -1.6
391,314 - -3.8
391,317 + -2.6
391,317 + -3.1
391,317 + -1.9
391,317 + -2.3
391,317 + -2.1
391,317 + -1.9
391,317 + -2.0
391,317 + -2.9
391,317 + -2.3
391,318 - -2.0
391,318 - -1.6
391,318 - -2.4
391,318 - -2.5
391,318 - -1.1
391,385 + -2.6
391,389 + -1.8
391,389 + -2.0
391,389 + -1.6
391,389 + -2.3
391,389 + -1.4
391,389 + -1.9
391,389 + -2.3
391,389 + -2.7
391,390 - -0.9
391,390 - -3.8
391,390 - -1.4
391,390 - -1.0
391,390 - -0.6
391,390 - -1.8
391,390 - -1.2
391,390 - -1.0
391,390 - -1.8
391,531 - ABCV34_RS01800 0.11 -2.2
391,594 + ABCV34_RS01800 0.16 -2.4
391,594 + ABCV34_RS01800 0.16 -1.0
391,594 + ABCV34_RS01800 0.16 -2.1
391,594 + ABCV34_RS01800 0.16 -1.4
391,595 - ABCV34_RS01800 0.16 -2.9
391,595 - ABCV34_RS01800 0.16 -2.0
391,595 - ABCV34_RS01800 0.16 -1.5
391,595 - ABCV34_RS01800 0.16 -2.8
391,595 - ABCV34_RS01800 0.16 -2.5
391,595 - ABCV34_RS01800 0.16 -2.3
391,597 + ABCV34_RS01800 0.16 -3.3
391,597 + ABCV34_RS01800 0.16 -2.5
391,597 + ABCV34_RS01800 0.16 -1.9
391,597 + ABCV34_RS01800 0.16 -3.2
391,597 + ABCV34_RS01800 0.16 -2.0
391,598 - ABCV34_RS01800 0.16 -2.6
391,598 - ABCV34_RS01800 0.16 -1.7
391,598 - ABCV34_RS01800 0.16 -2.1
391,598 - ABCV34_RS01800 0.16 -2.2
391,598 - ABCV34_RS01800 0.16 -2.9
391,598 - ABCV34_RS01800 0.16 -1.8
391,598 - ABCV34_RS01800 0.16 -2.4
391,598 - ABCV34_RS01800 0.16 -2.9
391,598 - ABCV34_RS01800 0.16 -2.6
391,608 + ABCV34_RS01800 0.17 -1.7
391,732 + ABCV34_RS01800 0.27 -2.4
391,744 + ABCV34_RS01800 0.28 -2.1
391,745 - ABCV34_RS01800 0.28 -2.7
391,745 - ABCV34_RS01800 0.28 -2.0
391,745 - ABCV34_RS01800 0.28 -2.5
391,745 - ABCV34_RS01800 0.28 -2.1
391,745 - ABCV34_RS01800 0.28 -3.8
391,745 - ABCV34_RS01800 0.28 -3.3
391,759 - ABCV34_RS01800 0.29 -0.7
391,759 - ABCV34_RS01800 0.29 -2.9
391,759 - ABCV34_RS01800 0.29 +0.0
391,780 + ABCV34_RS01800 0.31 -2.3
391,780 + ABCV34_RS01800 0.31 -1.2
391,780 + ABCV34_RS01800 0.31 -1.9
391,780 + ABCV34_RS01800 0.31 -1.4
391,780 + ABCV34_RS01800 0.31 -2.3
391,780 + ABCV34_RS01800 0.31 -2.1
391,780 + ABCV34_RS01800 0.31 -2.6
391,780 + ABCV34_RS01800 0.31 -1.8
391,780 + ABCV34_RS01800 0.31 -2.4
391,781 - ABCV34_RS01800 0.31 -3.7
391,781 - ABCV34_RS01800 0.31 -2.7
391,781 - ABCV34_RS01800 0.31 -2.2
391,781 - ABCV34_RS01800 0.31 -2.4
391,781 - ABCV34_RS01800 0.31 -2.5
391,781 - ABCV34_RS01800 0.31 -3.0
391,781 - ABCV34_RS01800 0.31 -2.7
391,781 - ABCV34_RS01800 0.31 -3.0
391,816 + ABCV34_RS01800 0.34 -2.6
391,834 + ABCV34_RS01800 0.35 -2.6
391,954 + ABCV34_RS01800 0.45 -2.9
391,955 - ABCV34_RS01800 0.45 -1.0
391,955 - ABCV34_RS01800 0.45 -2.6
391,955 - ABCV34_RS01800 0.45 -2.4
391,955 - ABCV34_RS01800 0.45 -2.0
391,955 - ABCV34_RS01800 0.45 -2.1
392,006 + ABCV34_RS01800 0.49 -3.1
392,006 + ABCV34_RS01800 0.49 -2.7
392,006 + ABCV34_RS01800 0.49 -2.2
392,007 - ABCV34_RS01800 0.50 -4.2
392,007 - ABCV34_RS01800 0.50 -3.4
392,007 - ABCV34_RS01800 0.50 -2.4
392,007 - ABCV34_RS01800 0.50 -2.0
392,007 - ABCV34_RS01800 0.50 -1.8
392,007 - ABCV34_RS01800 0.50 -2.1
392,007 - ABCV34_RS01800 0.50 -2.2
392,074 + ABCV34_RS01800 0.55 -2.8
392,074 + ABCV34_RS01800 0.55 -1.7
392,074 + ABCV34_RS01800 0.55 -3.0
392,074 + ABCV34_RS01800 0.55 -2.2
392,075 - ABCV34_RS01800 0.55 -1.6
392,075 - ABCV34_RS01800 0.55 -1.7
392,075 - ABCV34_RS01800 0.55 -2.9
392,075 - ABCV34_RS01800 0.55 -1.3
392,075 - ABCV34_RS01800 0.55 -2.9
392,075 - ABCV34_RS01800 0.55 -1.1
392,075 - ABCV34_RS01800 0.55 -2.9
392,135 - ABCV34_RS01800 0.60 -1.1
392,161 + ABCV34_RS01800 0.62 -2.4
392,161 + ABCV34_RS01800 0.62 -2.3
392,161 + ABCV34_RS01800 0.62 -2.5
392,161 + ABCV34_RS01800 0.62 -1.8
392,161 + ABCV34_RS01800 0.62 -2.1
392,162 - ABCV34_RS01800 0.62 -2.4
392,162 - ABCV34_RS01800 0.62 -3.3
392,326 - ABCV34_RS01800 0.76 -0.6

Or see this region's nucleotide sequence