Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01255

Experiment: Anaerobic, pH7.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01245 and ABCV34_RS01250 are separated by 57 nucleotidesABCV34_RS01250 and ABCV34_RS01255 are separated by 48 nucleotidesABCV34_RS01255 and ABCV34_RS01260 are separated by 120 nucleotides ABCV34_RS01245: ABCV34_RS01245 - NAD(P)H-quinone oxidoreductase, at 262,483 to 263,463 _RS01245 ABCV34_RS01250: ABCV34_RS01250 - tRNA-Ser, at 263,521 to 263,608 _RS01250 ABCV34_RS01255: ABCV34_RS01255 - zinc-dependent alcohol dehydrogenase family protein, at 263,657 to 264,640 _RS01255 ABCV34_RS01260: ABCV34_RS01260 - magnesium-translocating P-type ATPase, at 264,761 to 267,478 _RS01260 Position (kb) 263 264 265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 262.744 kb on + strand, within ABCV34_RS01245at 262.745 kb on - strand, within ABCV34_RS01245at 262.745 kb on - strand, within ABCV34_RS01245at 262.805 kb on + strand, within ABCV34_RS01245at 262.805 kb on + strand, within ABCV34_RS01245at 262.806 kb on - strand, within ABCV34_RS01245at 262.806 kb on - strand, within ABCV34_RS01245at 262.806 kb on - strand, within ABCV34_RS01245at 262.806 kb on - strand, within ABCV34_RS01245at 262.892 kb on + strand, within ABCV34_RS01245at 262.893 kb on - strand, within ABCV34_RS01245at 262.893 kb on - strand, within ABCV34_RS01245at 262.961 kb on + strand, within ABCV34_RS01245at 262.962 kb on - strand, within ABCV34_RS01245at 263.093 kb on + strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.094 kb on - strand, within ABCV34_RS01245at 263.174 kb on + strand, within ABCV34_RS01245at 263.175 kb on - strand, within ABCV34_RS01245at 263.175 kb on - strand, within ABCV34_RS01245at 263.313 kb on - strand, within ABCV34_RS01245at 263.493 kb on + strandat 263.493 kb on + strandat 263.493 kb on + strandat 263.494 kb on - strandat 263.494 kb on - strandat 263.500 kb on + strandat 263.736 kb on + strandat 263.736 kb on + strandat 263.737 kb on - strandat 263.737 kb on - strandat 263.737 kb on - strandat 263.756 kb on + strand, within ABCV34_RS01255at 263.756 kb on + strand, within ABCV34_RS01255at 263.756 kb on + strand, within ABCV34_RS01255at 264.101 kb on + strand, within ABCV34_RS01255at 264.101 kb on + strand, within ABCV34_RS01255at 264.101 kb on + strand, within ABCV34_RS01255at 264.101 kb on + strand, within ABCV34_RS01255at 264.101 kb on + strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.102 kb on - strand, within ABCV34_RS01255at 264.115 kb on + strand, within ABCV34_RS01255at 264.116 kb on - strand, within ABCV34_RS01255at 264.116 kb on - strand, within ABCV34_RS01255at 264.188 kb on + strand, within ABCV34_RS01255at 264.188 kb on + strand, within ABCV34_RS01255at 264.188 kb on + strand, within ABCV34_RS01255at 264.188 kb on + strand, within ABCV34_RS01255at 264.188 kb on + strand, within ABCV34_RS01255at 264.189 kb on - strand, within ABCV34_RS01255at 264.189 kb on - strand, within ABCV34_RS01255at 264.189 kb on - strand, within ABCV34_RS01255at 264.189 kb on - strand, within ABCV34_RS01255at 264.189 kb on - strand, within ABCV34_RS01255at 264.189 kb on - strand, within ABCV34_RS01255at 264.301 kb on + strand, within ABCV34_RS01255at 264.301 kb on + strand, within ABCV34_RS01255at 264.302 kb on - strand, within ABCV34_RS01255at 264.302 kb on - strand, within ABCV34_RS01255at 264.304 kb on - strand, within ABCV34_RS01255at 264.304 kb on - strand, within ABCV34_RS01255at 264.455 kb on + strand, within ABCV34_RS01255at 264.456 kb on - strand, within ABCV34_RS01255at 264.470 kb on + strand, within ABCV34_RS01255at 264.470 kb on + strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.471 kb on - strand, within ABCV34_RS01255at 264.726 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.729 kb on + strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.730 kb on - strandat 264.731 kb on + strandat 264.731 kb on + strandat 264.731 kb on + strandat 264.731 kb on + strandat 264.731 kb on + strandat 264.732 kb on - strandat 264.732 kb on - strandat 264.732 kb on - strandat 264.732 kb on - strandat 264.732 kb on - strandat 264.732 kb on - strandat 264.756 kb on + strandat 264.756 kb on + strandat 264.756 kb on + strandat 264.899 kb on + strandat 264.900 kb on - strandat 264.907 kb on + strandat 264.908 kb on - strandat 264.908 kb on - strandat 265.184 kb on + strand, within ABCV34_RS01260at 265.184 kb on + strand, within ABCV34_RS01260at 265.185 kb on - strand, within ABCV34_RS01260at 265.185 kb on - strand, within ABCV34_RS01260at 265.222 kb on + strand, within ABCV34_RS01260at 265.222 kb on + strand, within ABCV34_RS01260at 265.222 kb on + strand, within ABCV34_RS01260at 265.223 kb on - strand, within ABCV34_RS01260at 265.342 kb on - strand, within ABCV34_RS01260at 265.342 kb on - strand, within ABCV34_RS01260at 265.342 kb on - strand, within ABCV34_RS01260at 265.397 kb on + strand, within ABCV34_RS01260at 265.398 kb on - strand, within ABCV34_RS01260at 265.398 kb on - strand, within ABCV34_RS01260at 265.535 kb on + strand, within ABCV34_RS01260at 265.535 kb on + strand, within ABCV34_RS01260at 265.536 kb on - strand, within ABCV34_RS01260

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH7.5
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262,744 + ABCV34_RS01245 0.27 -2.3
262,745 - ABCV34_RS01245 0.27 -2.2
262,745 - ABCV34_RS01245 0.27 -1.8
262,805 + ABCV34_RS01245 0.33 -3.3
262,805 + ABCV34_RS01245 0.33 -4.5
262,806 - ABCV34_RS01245 0.33 -2.6
262,806 - ABCV34_RS01245 0.33 -2.7
262,806 - ABCV34_RS01245 0.33 -2.0
262,806 - ABCV34_RS01245 0.33 -1.7
262,892 + ABCV34_RS01245 0.42 -1.6
262,893 - ABCV34_RS01245 0.42 -1.6
262,893 - ABCV34_RS01245 0.42 -2.6
262,961 + ABCV34_RS01245 0.49 -2.7
262,962 - ABCV34_RS01245 0.49 -2.5
263,093 + ABCV34_RS01245 0.62 -1.5
263,094 - ABCV34_RS01245 0.62 -2.1
263,094 - ABCV34_RS01245 0.62 -1.7
263,094 - ABCV34_RS01245 0.62 -2.3
263,094 - ABCV34_RS01245 0.62 -2.4
263,094 - ABCV34_RS01245 0.62 -3.3
263,094 - ABCV34_RS01245 0.62 -2.1
263,094 - ABCV34_RS01245 0.62 -2.0
263,094 - ABCV34_RS01245 0.62 -2.1
263,094 - ABCV34_RS01245 0.62 -2.2
263,174 + ABCV34_RS01245 0.70 -2.3
263,175 - ABCV34_RS01245 0.71 -3.2
263,175 - ABCV34_RS01245 0.71 -3.9
263,313 - ABCV34_RS01245 0.85 -3.4
263,493 + -2.3
263,493 + -2.3
263,493 + -1.6
263,494 - -2.6
263,494 - -2.5
263,500 + -2.8
263,736 + -1.7
263,736 + -2.5
263,737 - -3.2
263,737 - -2.4
263,737 - -2.7
263,756 + ABCV34_RS01255 0.10 -1.7
263,756 + ABCV34_RS01255 0.10 -2.3
263,756 + ABCV34_RS01255 0.10 -2.8
264,101 + ABCV34_RS01255 0.45 -3.7
264,101 + ABCV34_RS01255 0.45 -2.5
264,101 + ABCV34_RS01255 0.45 -2.5
264,101 + ABCV34_RS01255 0.45 -3.4
264,101 + ABCV34_RS01255 0.45 -2.8
264,102 - ABCV34_RS01255 0.45 -2.7
264,102 - ABCV34_RS01255 0.45 -3.3
264,102 - ABCV34_RS01255 0.45 -2.1
264,102 - ABCV34_RS01255 0.45 -3.7
264,102 - ABCV34_RS01255 0.45 -2.6
264,102 - ABCV34_RS01255 0.45 -2.1
264,102 - ABCV34_RS01255 0.45 -2.1
264,115 + ABCV34_RS01255 0.47 -2.4
264,116 - ABCV34_RS01255 0.47 -3.3
264,116 - ABCV34_RS01255 0.47 -4.1
264,188 + ABCV34_RS01255 0.54 -2.0
264,188 + ABCV34_RS01255 0.54 -1.8
264,188 + ABCV34_RS01255 0.54 -3.3
264,188 + ABCV34_RS01255 0.54 -2.1
264,188 + ABCV34_RS01255 0.54 -3.6
264,189 - ABCV34_RS01255 0.54 -0.6
264,189 - ABCV34_RS01255 0.54 -2.2
264,189 - ABCV34_RS01255 0.54 -3.2
264,189 - ABCV34_RS01255 0.54 -3.8
264,189 - ABCV34_RS01255 0.54 -2.6
264,189 - ABCV34_RS01255 0.54 -2.3
264,301 + ABCV34_RS01255 0.65 -2.1
264,301 + ABCV34_RS01255 0.65 -3.4
264,302 - ABCV34_RS01255 0.66 -3.1
264,302 - ABCV34_RS01255 0.66 -1.4
264,304 - ABCV34_RS01255 0.66 -2.8
264,304 - ABCV34_RS01255 0.66 -2.7
264,455 + ABCV34_RS01255 0.81 -1.0
264,456 - ABCV34_RS01255 0.81 -3.0
264,470 + ABCV34_RS01255 0.83 -1.9
264,470 + ABCV34_RS01255 0.83 -1.3
264,471 - ABCV34_RS01255 0.83 -2.7
264,471 - ABCV34_RS01255 0.83 -4.2
264,471 - ABCV34_RS01255 0.83 -2.6
264,471 - ABCV34_RS01255 0.83 -2.7
264,471 - ABCV34_RS01255 0.83 -1.7
264,471 - ABCV34_RS01255 0.83 -1.7
264,471 - ABCV34_RS01255 0.83 -2.7
264,471 - ABCV34_RS01255 0.83 -3.8
264,726 + -2.0
264,729 + -2.6
264,729 + -2.3
264,729 + -3.0
264,729 + -3.1
264,729 + -2.9
264,729 + -1.8
264,729 + -3.1
264,729 + -3.6
264,729 + -3.5
264,729 + -3.5
264,729 + -4.0
264,729 + -3.6
264,729 + -2.5
264,729 + -4.0
264,729 + -2.8
264,729 + -1.4
264,729 + -2.8
264,729 + -2.9
264,729 + -1.3
264,729 + -2.6
264,729 + -1.5
264,729 + -3.8
264,729 + -2.2
264,730 - -1.3
264,730 - -2.1
264,730 - -0.6
264,730 - -2.0
264,730 - -2.8
264,730 - -1.5
264,730 - -2.3
264,730 - -3.2
264,730 - -2.9
264,730 - -2.8
264,730 - -2.8
264,730 - -2.2
264,730 - -2.6
264,730 - -0.5
264,730 - -2.6
264,730 - -1.7
264,730 - -1.2
264,730 - -3.6
264,730 - -2.8
264,730 - -2.0
264,730 - -3.0
264,730 - -2.3
264,731 + -3.6
264,731 + -2.3
264,731 + -2.7
264,731 + -3.2
264,731 + -2.1
264,732 - -3.5
264,732 - -2.0
264,732 - -3.0
264,732 - -3.5
264,732 - -1.4
264,732 - -1.3
264,756 + -2.8
264,756 + -1.2
264,756 + -2.2
264,899 + -3.5
264,900 - -1.9
264,907 + -2.8
264,908 - -4.1
264,908 - -3.5
265,184 + ABCV34_RS01260 0.16 -3.5
265,184 + ABCV34_RS01260 0.16 -2.6
265,185 - ABCV34_RS01260 0.16 -2.3
265,185 - ABCV34_RS01260 0.16 -2.1
265,222 + ABCV34_RS01260 0.17 -3.0
265,222 + ABCV34_RS01260 0.17 -2.5
265,222 + ABCV34_RS01260 0.17 -2.7
265,223 - ABCV34_RS01260 0.17 -2.9
265,342 - ABCV34_RS01260 0.21 -2.5
265,342 - ABCV34_RS01260 0.21 -2.7
265,342 - ABCV34_RS01260 0.21 -2.4
265,397 + ABCV34_RS01260 0.23 -2.9
265,398 - ABCV34_RS01260 0.23 -3.5
265,398 - ABCV34_RS01260 0.23 -2.0
265,535 + ABCV34_RS01260 0.28 -1.2
265,535 + ABCV34_RS01260 0.28 -3.2
265,536 - ABCV34_RS01260 0.29 -2.3

Or see this region's nucleotide sequence