Experiment: Anaerobic, pH7.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00985 and ABCV34_RS00990 are separated by 69 nucleotides ABCV34_RS00990 and ABCV34_RS00995 are separated by 230 nucleotides ABCV34_RS00995 and ABCV34_RS01005 are separated by 600 nucleotides ABCV34_RS01005 and ABCV34_RS01010 are separated by 3 nucleotides
ABCV34_RS00985: ABCV34_RS00985 - NAD(P)H-dependent oxidoreductase, at 213,322 to 213,897
_RS00985
ABCV34_RS00990: ABCV34_RS00990 - virulence factor, at 213,967 to 214,290
_RS00990
ABCV34_RS00995: ABCV34_RS00995 - dienelactone hydrolase family protein, at 214,521 to 215,189
_RS00995
ABCV34_RS01005: ABCV34_RS01005 - hypothetical protein, at 215,790 to 216,056
_RS01005
ABCV34_RS01010: ABCV34_RS01010 - YaiI/YqxD family protein, at 216,060 to 216,554
_RS01010
Position (kb) 214
215
216 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 213.556 kb on + strand, within ABCV34_RS00985 at 213.556 kb on + strand, within ABCV34_RS00985 at 213.556 kb on + strand, within ABCV34_RS00985 at 213.557 kb on - strand, within ABCV34_RS00985 at 213.557 kb on - strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.563 kb on - strand, within ABCV34_RS00985 at 213.563 kb on - strand, within ABCV34_RS00985 at 213.563 kb on - strand, within ABCV34_RS00985 at 213.691 kb on + strand, within ABCV34_RS00985 at 213.691 kb on + strand, within ABCV34_RS00985 at 213.692 kb on - strand, within ABCV34_RS00985 at 213.692 kb on - strand, within ABCV34_RS00985 at 213.692 kb on - strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.716 kb on - strand, within ABCV34_RS00985 at 213.716 kb on - strand, within ABCV34_RS00985 at 214.046 kb on + strand, within ABCV34_RS00990 at 214.046 kb on + strand, within ABCV34_RS00990 at 214.046 kb on + strand, within ABCV34_RS00990 at 214.047 kb on - strand, within ABCV34_RS00990 at 214.080 kb on - strand, within ABCV34_RS00990 at 214.080 kb on - strand, within ABCV34_RS00990 at 214.097 kb on + strand, within ABCV34_RS00990 at 214.097 kb on + strand, within ABCV34_RS00990 at 214.098 kb on - strand, within ABCV34_RS00990 at 214.098 kb on - strand, within ABCV34_RS00990 at 214.098 kb on - strand, within ABCV34_RS00990 at 214.115 kb on - strand, within ABCV34_RS00990 at 214.115 kb on - strand, within ABCV34_RS00990 at 214.115 kb on - strand, within ABCV34_RS00990 at 214.137 kb on - strand, within ABCV34_RS00990 at 214.137 kb on - strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.352 kb on + strand at 214.353 kb on - strand at 214.353 kb on - strand at 214.354 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.586 kb on - strand at 214.586 kb on - strand at 214.586 kb on - strand at 214.586 kb on - strand at 214.630 kb on + strand, within ABCV34_RS00995 at 214.630 kb on + strand, within ABCV34_RS00995 at 214.630 kb on + strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.739 kb on + strand, within ABCV34_RS00995 at 214.740 kb on - strand, within ABCV34_RS00995 at 214.796 kb on + strand, within ABCV34_RS00995 at 214.797 kb on - strand, within ABCV34_RS00995 at 214.828 kb on + strand, within ABCV34_RS00995 at 214.828 kb on + strand, within ABCV34_RS00995 at 214.829 kb on - strand, within ABCV34_RS00995 at 214.843 kb on + strand, within ABCV34_RS00995 at 214.843 kb on + strand, within ABCV34_RS00995 at 214.844 kb on - strand, within ABCV34_RS00995 at 214.936 kb on + strand, within ABCV34_RS00995 at 214.936 kb on + strand, within ABCV34_RS00995 at 214.937 kb on - strand, within ABCV34_RS00995 at 214.937 kb on - strand, within ABCV34_RS00995 at 214.941 kb on + strand, within ABCV34_RS00995 at 214.942 kb on - strand, within ABCV34_RS00995 at 214.942 kb on - strand, within ABCV34_RS00995 at 214.969 kb on + strand, within ABCV34_RS00995 at 214.970 kb on - strand, within ABCV34_RS00995 at 214.970 kb on - strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.075 kb on - strand, within ABCV34_RS00995 at 215.075 kb on - strand, within ABCV34_RS00995 at 215.075 kb on - strand, within ABCV34_RS00995 at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.266 kb on + strand at 215.266 kb on + strand at 215.266 kb on + strand at 215.266 kb on + strand at 215.269 kb on + strand at 215.269 kb on + strand at 215.269 kb on + strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.276 kb on - strand at 215.276 kb on - strand at 215.290 kb on - strand at 215.716 kb on + strand at 215.716 kb on + strand at 215.717 kb on - strand at 215.717 kb on - strand at 215.837 kb on + strand, within ABCV34_RS01005 at 215.869 kb on - strand, within ABCV34_RS01005 at 215.869 kb on - strand, within ABCV34_RS01005 at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.065 kb on + strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.066 kb on - strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.067 kb on + strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.068 kb on - strand at 216.152 kb on - strand, within ABCV34_RS01010 at 216.152 kb on - strand, within ABCV34_RS01010
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, pH7.5 remove 213,556 + ABCV34_RS00985 0.41 -3.3 213,556 + ABCV34_RS00985 0.41 -2.3 213,556 + ABCV34_RS00985 0.41 -1.8 213,557 - ABCV34_RS00985 0.41 -2.5 213,557 - ABCV34_RS00985 0.41 -2.3 213,562 + ABCV34_RS00985 0.42 -2.1 213,562 + ABCV34_RS00985 0.42 -4.3 213,562 + ABCV34_RS00985 0.42 -1.8 213,562 + ABCV34_RS00985 0.42 -3.0 213,562 + ABCV34_RS00985 0.42 -1.0 213,563 - ABCV34_RS00985 0.42 -2.0 213,563 - ABCV34_RS00985 0.42 -2.3 213,563 - ABCV34_RS00985 0.42 -1.6 213,691 + ABCV34_RS00985 0.64 -2.8 213,691 + ABCV34_RS00985 0.64 -1.6 213,692 - ABCV34_RS00985 0.64 -1.5 213,692 - ABCV34_RS00985 0.64 -2.2 213,692 - ABCV34_RS00985 0.64 -2.6 213,715 + ABCV34_RS00985 0.68 -2.5 213,715 + ABCV34_RS00985 0.68 -2.5 213,715 + ABCV34_RS00985 0.68 -1.9 213,715 + ABCV34_RS00985 0.68 -3.8 213,716 - ABCV34_RS00985 0.68 -2.9 213,716 - ABCV34_RS00985 0.68 -1.7 214,046 + ABCV34_RS00990 0.24 -2.7 214,046 + ABCV34_RS00990 0.24 -2.2 214,046 + ABCV34_RS00990 0.24 -2.3 214,047 - ABCV34_RS00990 0.25 -2.5 214,080 - ABCV34_RS00990 0.35 -2.6 214,080 - ABCV34_RS00990 0.35 -3.4 214,097 + ABCV34_RS00990 0.40 -2.3 214,097 + ABCV34_RS00990 0.40 -1.7 214,098 - ABCV34_RS00990 0.40 -2.4 214,098 - ABCV34_RS00990 0.40 -2.1 214,098 - ABCV34_RS00990 0.40 -2.7 214,115 - ABCV34_RS00990 0.46 -2.9 214,115 - ABCV34_RS00990 0.46 -2.5 214,115 - ABCV34_RS00990 0.46 -2.4 214,137 - ABCV34_RS00990 0.52 -2.5 214,137 - ABCV34_RS00990 0.52 -2.5 214,160 + ABCV34_RS00990 0.60 -1.1 214,160 + ABCV34_RS00990 0.60 -2.1 214,160 + ABCV34_RS00990 0.60 -1.1 214,160 + ABCV34_RS00990 0.60 -2.4 214,160 + ABCV34_RS00990 0.60 -2.6 214,161 - ABCV34_RS00990 0.60 -2.8 214,161 - ABCV34_RS00990 0.60 -2.3 214,161 - ABCV34_RS00990 0.60 -2.1 214,161 - ABCV34_RS00990 0.60 -3.4 214,161 - ABCV34_RS00990 0.60 -2.5 214,161 - ABCV34_RS00990 0.60 -2.0 214,352 + -2.3 214,353 - -2.9 214,353 - -2.8 214,354 + -2.1 214,585 + -3.1 214,585 + -2.3 214,585 + -3.3 214,585 + -3.4 214,585 + -2.9 214,586 - -2.3 214,586 - -2.4 214,586 - -1.6 214,586 - -1.7 214,630 + ABCV34_RS00995 0.16 -3.1 214,630 + ABCV34_RS00995 0.16 -3.1 214,630 + ABCV34_RS00995 0.16 -2.8 214,631 - ABCV34_RS00995 0.16 -3.9 214,631 - ABCV34_RS00995 0.16 -0.7 214,631 - ABCV34_RS00995 0.16 -1.7 214,631 - ABCV34_RS00995 0.16 -2.3 214,631 - ABCV34_RS00995 0.16 -2.1 214,739 + ABCV34_RS00995 0.33 -2.8 214,740 - ABCV34_RS00995 0.33 -3.5 214,796 + ABCV34_RS00995 0.41 -2.9 214,797 - ABCV34_RS00995 0.41 -2.2 214,828 + ABCV34_RS00995 0.46 -3.1 214,828 + ABCV34_RS00995 0.46 -3.7 214,829 - ABCV34_RS00995 0.46 -3.5 214,843 + ABCV34_RS00995 0.48 -2.7 214,843 + ABCV34_RS00995 0.48 -2.6 214,844 - ABCV34_RS00995 0.48 -2.7 214,936 + ABCV34_RS00995 0.62 -2.3 214,936 + ABCV34_RS00995 0.62 -2.3 214,937 - ABCV34_RS00995 0.62 -2.4 214,937 - ABCV34_RS00995 0.62 -3.2 214,941 + ABCV34_RS00995 0.63 -4.4 214,942 - ABCV34_RS00995 0.63 -3.6 214,942 - ABCV34_RS00995 0.63 -1.6 214,969 + ABCV34_RS00995 0.67 -2.9 214,970 - ABCV34_RS00995 0.67 -2.0 214,970 - ABCV34_RS00995 0.67 -3.2 215,074 + ABCV34_RS00995 0.83 -3.5 215,074 + ABCV34_RS00995 0.83 -2.1 215,074 + ABCV34_RS00995 0.83 -2.5 215,074 + ABCV34_RS00995 0.83 -2.6 215,075 - ABCV34_RS00995 0.83 -2.2 215,075 - ABCV34_RS00995 0.83 -2.2 215,075 - ABCV34_RS00995 0.83 -3.1 215,143 + -2.5 215,143 + -3.1 215,143 + -2.8 215,143 + -1.8 215,143 + -3.5 215,143 + -1.8 215,144 - -3.2 215,144 - -1.6 215,144 - -3.0 215,144 - -1.6 215,144 - -2.2 215,144 - -2.0 215,266 + -2.0 215,266 + -2.6 215,266 + -2.8 215,266 + -1.9 215,269 + -3.5 215,269 + -0.8 215,269 + -1.7 215,270 - -1.3 215,270 - -3.6 215,270 - -2.3 215,270 - -3.1 215,270 - -2.3 215,270 - -2.9 215,270 - -2.7 215,270 - -1.7 215,276 - -2.3 215,276 - -1.9 215,290 - -3.2 215,716 + -3.6 215,716 + -2.0 215,717 - -2.8 215,717 - -2.5 215,837 + ABCV34_RS01005 0.18 -1.0 215,869 - ABCV34_RS01005 0.30 -2.1 215,869 - ABCV34_RS01005 0.30 -1.5 216,065 + -2.6 216,065 + -0.8 216,065 + -2.6 216,065 + -2.1 216,065 + -2.8 216,065 + -3.2 216,065 + -2.2 216,065 + -2.7 216,065 + -2.1 216,065 + -2.6 216,065 + -2.1 216,066 - -3.5 216,066 - -2.7 216,066 - -1.5 216,066 - -1.3 216,066 - -2.9 216,066 - -0.9 216,066 - -2.2 216,066 - -3.0 216,066 - -3.6 216,066 - -3.0 216,066 - -3.2 216,067 + -3.5 216,067 + -3.0 216,067 + -1.8 216,067 + -2.3 216,067 + -3.5 216,067 + -2.6 216,067 + -2.2 216,067 + -3.1 216,067 + -1.8 216,067 + -3.0 216,067 + -1.0 216,067 + -2.6 216,068 - -2.3 216,068 - -2.3 216,068 - -2.4 216,068 - -2.5 216,068 - -2.1 216,068 - -3.3 216,068 - -3.3 216,068 - -2.6 216,068 - -1.8 216,068 - -2.3 216,068 - -1.9 216,068 - -2.8 216,068 - -2.4 216,068 - -3.0 216,152 - ABCV34_RS01010 0.19 -2.0 216,152 - ABCV34_RS01010 0.19 -4.8
Or see this region's nucleotide sequence