Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00067

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00066 and MPMX20_00067 are separated by 94 nucleotidesMPMX20_00067 and MPMX20_00068 are separated by 26 nucleotides MPMX20_00066: MPMX20_00066 - HTH-type transcriptional regulator PgrR, at 67,452 to 68,339 _00066 MPMX20_00067: MPMX20_00067 - hypothetical protein, at 68,434 to 69,213 _00067 MPMX20_00068: MPMX20_00068 - HTH-type transcriptional regulator CdhR, at 69,240 to 70,193 _00068 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 67.507 kb on + strandat 67.507 kb on + strandat 67.516 kb on - strandat 67.546 kb on - strand, within MPMX20_00066at 67.549 kb on + strand, within MPMX20_00066at 67.556 kb on - strand, within MPMX20_00066at 67.557 kb on - strand, within MPMX20_00066at 67.557 kb on - strand, within MPMX20_00066at 67.557 kb on - strand, within MPMX20_00066at 67.567 kb on - strand, within MPMX20_00066at 67.567 kb on - strand, within MPMX20_00066at 67.601 kb on + strand, within MPMX20_00066at 67.620 kb on + strand, within MPMX20_00066at 67.945 kb on - strand, within MPMX20_00066at 67.972 kb on - strand, within MPMX20_00066at 68.005 kb on + strand, within MPMX20_00066at 68.005 kb on + strand, within MPMX20_00066at 68.013 kb on - strand, within MPMX20_00066at 68.018 kb on + strand, within MPMX20_00066at 68.023 kb on + strand, within MPMX20_00066at 68.031 kb on - strand, within MPMX20_00066at 68.031 kb on - strand, within MPMX20_00066at 68.083 kb on + strand, within MPMX20_00066at 68.128 kb on - strand, within MPMX20_00066at 68.151 kb on + strand, within MPMX20_00066at 68.208 kb on + strand, within MPMX20_00066at 68.237 kb on + strand, within MPMX20_00066at 68.374 kb on - strandat 68.392 kb on + strandat 68.405 kb on - strandat 68.405 kb on - strandat 68.459 kb on + strandat 68.474 kb on - strandat 68.482 kb on + strandat 68.501 kb on + strandat 68.501 kb on + strandat 68.501 kb on + strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.527 kb on + strand, within MPMX20_00067at 68.593 kb on - strand, within MPMX20_00067at 68.612 kb on - strand, within MPMX20_00067at 68.612 kb on - strand, within MPMX20_00067at 68.612 kb on - strand, within MPMX20_00067at 68.630 kb on + strand, within MPMX20_00067at 68.665 kb on + strand, within MPMX20_00067at 68.687 kb on + strand, within MPMX20_00067at 68.724 kb on + strand, within MPMX20_00067at 68.740 kb on - strand, within MPMX20_00067at 68.745 kb on - strand, within MPMX20_00067at 68.756 kb on - strand, within MPMX20_00067at 68.837 kb on - strand, within MPMX20_00067at 68.863 kb on + strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.881 kb on + strand, within MPMX20_00067at 68.915 kb on - strand, within MPMX20_00067at 68.928 kb on + strand, within MPMX20_00067at 68.977 kb on + strand, within MPMX20_00067at 68.985 kb on + strand, within MPMX20_00067at 68.999 kb on + strand, within MPMX20_00067at 69.007 kb on - strand, within MPMX20_00067at 69.038 kb on + strand, within MPMX20_00067at 69.038 kb on + strand, within MPMX20_00067at 69.118 kb on + strand, within MPMX20_00067at 69.126 kb on - strand, within MPMX20_00067at 69.128 kb on + strand, within MPMX20_00067at 69.128 kb on + strand, within MPMX20_00067at 69.136 kb on - strandat 69.138 kb on + strandat 69.162 kb on + strandat 69.212 kb on + strandat 69.243 kb on + strandat 69.251 kb on - strandat 69.281 kb on - strandat 69.285 kb on - strandat 69.285 kb on - strandat 69.290 kb on + strandat 69.327 kb on - strandat 69.351 kb on - strand, within MPMX20_00068at 69.397 kb on + strand, within MPMX20_00068at 69.456 kb on + strand, within MPMX20_00068at 69.497 kb on - strand, within MPMX20_00068at 69.497 kb on - strand, within MPMX20_00068at 69.498 kb on + strand, within MPMX20_00068at 69.498 kb on + strand, within MPMX20_00068at 69.506 kb on - strand, within MPMX20_00068at 69.506 kb on - strand, within MPMX20_00068at 69.508 kb on + strand, within MPMX20_00068at 69.508 kb on + strand, within MPMX20_00068at 69.512 kb on + strand, within MPMX20_00068at 69.513 kb on + strand, within MPMX20_00068at 69.513 kb on + strand, within MPMX20_00068at 69.516 kb on - strand, within MPMX20_00068at 69.521 kb on - strand, within MPMX20_00068at 69.521 kb on - strand, within MPMX20_00068at 69.567 kb on + strand, within MPMX20_00068at 69.580 kb on - strand, within MPMX20_00068at 69.667 kb on - strand, within MPMX20_00068at 69.783 kb on - strand, within MPMX20_00068at 69.791 kb on + strand, within MPMX20_00068at 69.820 kb on - strand, within MPMX20_00068at 69.891 kb on + strand, within MPMX20_00068at 69.903 kb on - strand, within MPMX20_00068at 69.938 kb on + strand, within MPMX20_00068at 69.944 kb on + strand, within MPMX20_00068at 69.956 kb on - strand, within MPMX20_00068at 70.050 kb on - strand, within MPMX20_00068at 70.063 kb on + strand, within MPMX20_00068at 70.084 kb on + strand, within MPMX20_00068at 70.098 kb on + strandat 70.100 kb on + strandat 70.100 kb on + strandat 70.100 kb on + strandat 70.106 kb on - strandat 70.106 kb on - strandat 70.107 kb on - strandat 70.108 kb on - strandat 70.108 kb on - strandat 70.110 kb on + strandat 70.110 kb on + strandat 70.118 kb on - strandat 70.118 kb on - strandat 70.118 kb on - strandat 70.159 kb on - strandat 70.166 kb on + strandat 70.166 kb on + strandat 70.166 kb on + strandat 70.166 kb on + strandat 70.174 kb on - strandat 70.182 kb on - strandat 70.186 kb on + strandat 70.210 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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67,507 + +1.1
67,507 + +0.4
67,516 - +0.6
67,546 - MPMX20_00066 0.11 +0.0
67,549 + MPMX20_00066 0.11 +1.0
67,556 - MPMX20_00066 0.12 +0.3
67,557 - MPMX20_00066 0.12 +0.5
67,557 - MPMX20_00066 0.12 +1.0
67,557 - MPMX20_00066 0.12 +0.0
67,567 - MPMX20_00066 0.13 -0.5
67,567 - MPMX20_00066 0.13 -0.1
67,601 + MPMX20_00066 0.17 -1.1
67,620 + MPMX20_00066 0.19 +1.9
67,945 - MPMX20_00066 0.56 +0.7
67,972 - MPMX20_00066 0.59 +0.5
68,005 + MPMX20_00066 0.62 -0.0
68,005 + MPMX20_00066 0.62 +1.0
68,013 - MPMX20_00066 0.63 -0.6
68,018 + MPMX20_00066 0.64 -0.0
68,023 + MPMX20_00066 0.64 -2.1
68,031 - MPMX20_00066 0.65 -0.4
68,031 - MPMX20_00066 0.65 +1.1
68,083 + MPMX20_00066 0.71 -0.3
68,128 - MPMX20_00066 0.76 +0.6
68,151 + MPMX20_00066 0.79 +0.7
68,208 + MPMX20_00066 0.85 +0.3
68,237 + MPMX20_00066 0.88 -0.1
68,374 - +0.4
68,392 + +0.3
68,405 - -0.1
68,405 - +0.3
68,459 + -1.1
68,474 - -1.4
68,482 + -0.0
68,501 + +0.1
68,501 + -0.4
68,501 + -0.3
68,509 - -0.5
68,509 - -1.4
68,509 - +0.6
68,509 - -0.3
68,509 - +0.3
68,527 + MPMX20_00067 0.12 -1.7
68,593 - MPMX20_00067 0.20 -0.3
68,612 - MPMX20_00067 0.23 +0.7
68,612 - MPMX20_00067 0.23 -1.5
68,612 - MPMX20_00067 0.23 +0.4
68,630 + MPMX20_00067 0.25 +0.1
68,665 + MPMX20_00067 0.30 +0.1
68,687 + MPMX20_00067 0.32 -0.5
68,724 + MPMX20_00067 0.37 +1.1
68,740 - MPMX20_00067 0.39 +0.9
68,745 - MPMX20_00067 0.40 +0.3
68,756 - MPMX20_00067 0.41 -0.9
68,837 - MPMX20_00067 0.52 -1.0
68,863 + MPMX20_00067 0.55 -1.3
68,871 - MPMX20_00067 0.56 -0.5
68,871 - MPMX20_00067 0.56 -0.5
68,871 - MPMX20_00067 0.56 -0.6
68,871 - MPMX20_00067 0.56 +0.8
68,881 + MPMX20_00067 0.57 -1.7
68,915 - MPMX20_00067 0.62 -0.3
68,928 + MPMX20_00067 0.63 -0.3
68,977 + MPMX20_00067 0.70 +1.0
68,985 + MPMX20_00067 0.71 -0.6
68,999 + MPMX20_00067 0.72 -1.0
69,007 - MPMX20_00067 0.73 -0.8
69,038 + MPMX20_00067 0.77 -0.7
69,038 + MPMX20_00067 0.77 +0.0
69,118 + MPMX20_00067 0.88 -0.0
69,126 - MPMX20_00067 0.89 -1.2
69,128 + MPMX20_00067 0.89 -0.5
69,128 + MPMX20_00067 0.89 -2.0
69,136 - -2.6
69,138 + +0.1
69,162 + +0.9
69,212 + -0.2
69,243 + +0.9
69,251 - -0.2
69,281 - +1.5
69,285 - -0.7
69,285 - +0.0
69,290 + -0.6
69,327 - +0.5
69,351 - MPMX20_00068 0.12 -0.1
69,397 + MPMX20_00068 0.16 -0.8
69,456 + MPMX20_00068 0.23 +0.5
69,497 - MPMX20_00068 0.27 -0.0
69,497 - MPMX20_00068 0.27 -0.6
69,498 + MPMX20_00068 0.27 +0.0
69,498 + MPMX20_00068 0.27 -0.3
69,506 - MPMX20_00068 0.28 -0.0
69,506 - MPMX20_00068 0.28 +0.5
69,508 + MPMX20_00068 0.28 -0.4
69,508 + MPMX20_00068 0.28 +1.2
69,512 + MPMX20_00068 0.29 -0.1
69,513 + MPMX20_00068 0.29 -0.3
69,513 + MPMX20_00068 0.29 -1.9
69,516 - MPMX20_00068 0.29 -1.6
69,521 - MPMX20_00068 0.29 -2.5
69,521 - MPMX20_00068 0.29 -0.0
69,567 + MPMX20_00068 0.34 +0.6
69,580 - MPMX20_00068 0.36 +0.4
69,667 - MPMX20_00068 0.45 -1.9
69,783 - MPMX20_00068 0.57 +0.5
69,791 + MPMX20_00068 0.58 -0.1
69,820 - MPMX20_00068 0.61 -0.5
69,891 + MPMX20_00068 0.68 +0.4
69,903 - MPMX20_00068 0.69 -0.0
69,938 + MPMX20_00068 0.73 -0.5
69,944 + MPMX20_00068 0.74 -1.0
69,956 - MPMX20_00068 0.75 -0.8
70,050 - MPMX20_00068 0.85 +0.4
70,063 + MPMX20_00068 0.86 +1.0
70,084 + MPMX20_00068 0.88 -0.5
70,098 + +0.2
70,100 + -0.9
70,100 + -0.3
70,100 + -0.6
70,106 - -0.5
70,106 - -1.0
70,107 - -0.7
70,108 - +0.2
70,108 - +0.0
70,110 + +0.5
70,110 + -0.3
70,118 - +0.8
70,118 - +0.0
70,118 - +0.0
70,159 - -0.6
70,166 + +0.8
70,166 + +1.9
70,166 + +0.0
70,166 + +0.3
70,174 - +1.0
70,182 - -1.1
70,186 + -0.6
70,210 + -0.4

Or see this region's nucleotide sequence