Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS15580

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
3,302,918	+		ABCV34_RS15575	0.58	-1.0
3,302,946	-		ABCV34_RS15575	0.59	-1.0
3,303,167	+		ABCV34_RS15575	0.74	-2.6
3,303,168	-		ABCV34_RS15575	0.74	-1.6
3,303,453	+				-1.0
3,303,453	+				-2.3
3,303,455	+				-2.0
3,303,455	+				-2.0
3,303,455	+				+0.0
3,303,455	+				-3.5
3,303,456	-				-2.8
3,303,456	-				-1.0
3,303,456	-				-2.3
3,303,581	+				-6.6
3,303,581	+				-4.3
3,303,581	+				+0.0
3,303,581	+				-3.9
3,303,581	+				-3.5
3,303,582	-				-3.5
3,303,583	+				-2.0
3,303,583	+				+0.0
3,303,583	+				+0.0
3,303,583	+				-3.4
3,303,583	+				-3.0
3,303,583	+				-2.6
3,303,584	-				-3.0
3,303,584	-				-0.7
3,303,584	-				-3.0
3,303,584	-				-1.0
3,303,584	-				-1.0
3,303,584	-				-3.2
3,303,584	-				-2.3
3,303,584	-				-2.5
3,303,737	+				-3.2
3,303,738	-				-1.6
3,303,826	-		ABCV34_RS15580	0.10	-2.8
3,303,965	+		ABCV34_RS15580	0.17	-4.0
3,303,965	+		ABCV34_RS15580	0.17	-3.6
3,303,965	+		ABCV34_RS15580	0.17	-3.1
3,303,965	+		ABCV34_RS15580	0.17	-4.0
3,303,965	+		ABCV34_RS15580	0.17	-2.2
3,303,965	+		ABCV34_RS15580	0.17	-2.9
3,303,965	+		ABCV34_RS15580	0.17	-2.3
3,303,966	-		ABCV34_RS15580	0.17	-4.1
3,303,966	-		ABCV34_RS15580	0.17	-2.7
3,303,966	-		ABCV34_RS15580	0.17	-2.6
3,303,966	-		ABCV34_RS15580	0.17	-1.6
3,304,082	+		ABCV34_RS15580	0.22	-5.0
3,304,082	+		ABCV34_RS15580	0.22	-2.8
3,304,082	+		ABCV34_RS15580	0.22	-3.6
3,304,083	-		ABCV34_RS15580	0.23	-4.4
3,304,298	+		ABCV34_RS15580	0.33	-3.8
3,304,298	+		ABCV34_RS15580	0.33	-3.5
3,304,299	-		ABCV34_RS15580	0.33	-3.6
3,304,489	+		ABCV34_RS15580	0.42	-1.0
3,304,493	+		ABCV34_RS15580	0.42	-3.2
3,304,676	+		ABCV34_RS15580	0.51	-4.8
3,304,676	+		ABCV34_RS15580	0.51	-3.7
3,304,757	+		ABCV34_RS15580	0.55	+0.0
3,304,757	+		ABCV34_RS15580	0.55	-3.5
3,304,757	+		ABCV34_RS15580	0.55	-4.0
3,304,757	+		ABCV34_RS15580	0.55	-2.3
3,304,757	+		ABCV34_RS15580	0.55	-4.6
3,304,758	-		ABCV34_RS15580	0.55	-3.2
3,304,758	-		ABCV34_RS15580	0.55	+1.0
3,304,758	-		ABCV34_RS15580	0.55	-4.6
3,304,758	-		ABCV34_RS15580	0.55	-4.7
3,304,758	-		ABCV34_RS15580	0.55	-1.0
3,304,758	-		ABCV34_RS15580	0.55	-3.9
3,304,758	-		ABCV34_RS15580	0.55	-4.2
3,304,916	+		ABCV34_RS15580	0.63	-5.4
3,304,917	-		ABCV34_RS15580	0.63	-3.7
3,304,917	-		ABCV34_RS15580	0.63	-2.0
3,305,015	+		ABCV34_RS15580	0.68	-4.5
3,305,015	+		ABCV34_RS15580	0.68	+1.0
3,305,015	+		ABCV34_RS15580	0.68	-2.3
3,305,015	+		ABCV34_RS15580	0.68	-3.8
3,305,015	+		ABCV34_RS15580	0.68	-2.2
3,305,016	-		ABCV34_RS15580	0.68	-2.4
3,305,016	-		ABCV34_RS15580	0.68	-3.6
3,305,016	-		ABCV34_RS15580	0.68	-1.8
3,305,016	-		ABCV34_RS15580	0.68	-1.6
3,305,039	+		ABCV34_RS15580	0.69	-3.8
3,305,039	+		ABCV34_RS15580	0.69	-3.6
3,305,039	+		ABCV34_RS15580	0.69	-4.4
3,305,039	+		ABCV34_RS15580	0.69	-2.6
3,305,040	-		ABCV34_RS15580	0.69	-3.7
3,305,040	-		ABCV34_RS15580	0.69	-4.5
3,305,040	-		ABCV34_RS15580	0.69	-2.5
3,305,040	-		ABCV34_RS15580	0.69	-2.8
3,305,040	-		ABCV34_RS15580	0.69	-2.0
3,305,040	-		ABCV34_RS15580	0.69	-3.7
3,305,040	-		ABCV34_RS15580	0.69	-3.0
3,305,040	-		ABCV34_RS15580	0.69	-4.0
3,305,040	-		ABCV34_RS15580	0.69	-3.8
3,305,040	-		ABCV34_RS15580	0.69	+0.0
3,305,040	-		ABCV34_RS15580	0.69	+0.0
3,305,040	-		ABCV34_RS15580	0.69	-3.0
3,305,286	-		ABCV34_RS15580	0.81	-3.9
3,305,286	-		ABCV34_RS15580	0.81	-3.7
3,305,426	+		ABCV34_RS15580	0.87	-1.6
3,305,426	+		ABCV34_RS15580	0.87	-3.0
3,305,426	+		ABCV34_RS15580	0.87	-5.7
3,305,426	+		ABCV34_RS15580	0.87	-1.6
3,305,426	+		ABCV34_RS15580	0.87	-3.6
3,305,426	+		ABCV34_RS15580	0.87	-3.5
3,305,426	+		ABCV34_RS15580	0.87	-4.9
3,305,426	+		ABCV34_RS15580	0.87	-5.0
3,305,426	+		ABCV34_RS15580	0.87	-4.9
3,305,426	+		ABCV34_RS15580	0.87	-3.8
3,305,426	+		ABCV34_RS15580	0.87	-1.3
3,305,427	-		ABCV34_RS15580	0.87	-3.7
3,305,427	-		ABCV34_RS15580	0.87	-2.0
3,305,427	-		ABCV34_RS15580	0.87	-5.7
3,305,427	-		ABCV34_RS15580	0.87	+0.0
3,305,427	-		ABCV34_RS15580	0.87	-0.9
3,305,427	-		ABCV34_RS15580	0.87	-3.6
3,305,427	-		ABCV34_RS15580	0.87	-3.0
3,305,427	-		ABCV34_RS15580	0.87	-3.6
3,305,427	-		ABCV34_RS15580	0.87	-3.0
3,305,427	-		ABCV34_RS15580	0.87	-2.3
3,305,427	-		ABCV34_RS15580	0.87	-2.9
3,305,427	-		ABCV34_RS15580	0.87	-3.7
3,305,456	+		ABCV34_RS15580	0.89	-3.8
3,305,456	+		ABCV34_RS15580	0.89	-4.7
3,305,456	+		ABCV34_RS15580	0.89	-3.2
3,305,456	+		ABCV34_RS15580	0.89	-1.0
3,305,456	+		ABCV34_RS15580	0.89	-2.0
3,305,456	+		ABCV34_RS15580	0.89	-5.0
3,305,456	+		ABCV34_RS15580	0.89	-3.2
3,305,457	-		ABCV34_RS15580	0.89	-2.3
3,305,485	+				-5.1
3,305,485	+				-2.9
3,305,663	+				-3.6
3,305,663	+				-1.6
3,305,663	+				-3.7
3,305,663	+				-5.7
3,305,663	+				+0.0
3,305,664	-				-4.8
3,305,664	-				-1.8
3,305,664	-				-4.0
3,305,664	-				-3.9
3,305,664	-				-2.8
3,305,664	-				-3.5
3,305,696	+				-3.0
3,305,696	+				-1.7
3,305,696	+				+1.6
3,305,696	+				+0.0
3,305,696	+				-2.1
3,305,696	+				-2.7
3,305,696	+				-2.7
3,305,696	+				-2.8
3,305,696	+				-2.5
3,305,696	+				-1.4
3,305,696	+				-2.2
3,305,697	-				+0.0
3,305,697	-				-1.7
3,305,697	-				-1.7
3,305,697	-				-3.8
3,305,697	-				-2.3
3,305,697	-				-0.2
3,305,697	-				-4.6
3,305,697	-				-3.2
3,305,697	-				-2.9
3,305,697	-				-2.4
3,305,697	-				-2.7
3,305,697	-				-3.6
3,305,697	-				-3.6
3,305,697	-				-2.3
3,305,697	-				-3.8
3,305,697	-				+0.0
3,305,697	-				-1.7
3,305,761	+				-4.5
3,305,762	-				-2.9
3,305,767	+				-2.2
3,305,767	+				-1.5
3,305,767	+				-1.1
3,305,768	-				-1.8
3,305,768	-				-2.6
3,305,768	-				-1.8
3,305,830	+				-0.7
3,305,830	+				-0.9
3,305,830	+				+0.4