Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS15200

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
3,226,191	+		ABCV34_RS15195	0.33	-2.3
3,226,192	-		ABCV34_RS15195	0.33	-2.6
3,226,200	+		ABCV34_RS15195	0.34	-1.6
3,226,201	-		ABCV34_RS15195	0.34	-2.7
3,226,201	-		ABCV34_RS15195	0.34	-5.5
3,226,248	+		ABCV34_RS15195	0.37	-2.0
3,226,248	+		ABCV34_RS15195	0.37	+0.0
3,226,249	-		ABCV34_RS15195	0.37	-6.4
3,226,249	-		ABCV34_RS15195	0.37	-3.5
3,226,548	+		ABCV34_RS15195	0.60	-3.3
3,226,549	-		ABCV34_RS15195	0.60	-3.3
3,226,549	-		ABCV34_RS15195	0.60	-5.2
3,226,575	+		ABCV34_RS15195	0.62	-4.8
3,226,576	-		ABCV34_RS15195	0.62	-3.3
3,226,623	+		ABCV34_RS15195	0.66	-2.8
3,226,624	-		ABCV34_RS15195	0.66	-4.8
3,226,933	-		ABCV34_RS15195	0.89	-3.3
3,226,933	-		ABCV34_RS15195	0.89	-2.5
3,226,933	-		ABCV34_RS15195	0.89	-4.0
3,226,933	-		ABCV34_RS15195	0.89	-3.0
3,226,933	-		ABCV34_RS15195	0.89	-4.0
3,226,933	-		ABCV34_RS15195	0.89	-4.1
3,226,933	-		ABCV34_RS15195	0.89	-4.1
3,226,979	-				-2.4
3,226,979	-				-3.3
3,226,979	-				-4.0
3,226,980	+				-4.5
3,226,980	+				-2.8
3,226,980	+				-2.6
3,226,980	+				-1.0
3,226,980	+				-2.0
3,226,980	+				-2.0
3,226,980	+				+0.0
3,226,980	+				-2.0
3,226,980	+				-1.6
3,226,980	+				-2.3
3,226,980	+				-3.0
3,226,980	+				-2.3
3,226,980	+				-1.6
3,226,980	+				-3.5
3,226,980	+				-2.1
3,226,980	+				-2.8
3,226,980	+				-2.0
3,226,980	+				-2.0
3,226,981	-				-5.6
3,226,981	-				-4.2
3,226,981	-				-4.4
3,226,981	-				-3.9
3,226,981	-				-4.3
3,226,981	-				-3.5
3,226,981	-				-4.0
3,226,981	-				-3.0
3,226,981	-				-4.2
3,226,981	-				-5.0
3,226,981	-				-2.3
3,226,981	-				-3.6
3,226,981	-				-5.1
3,226,981	-				-6.4
3,227,129	-		ABCV34_RS15200	0.18	-3.1
3,227,129	-		ABCV34_RS15200	0.18	-2.6
3,227,293	+		ABCV34_RS15200	0.57	-3.8
3,227,293	+		ABCV34_RS15200	0.57	-1.0
3,227,294	-		ABCV34_RS15200	0.57	-2.9
3,227,294	-		ABCV34_RS15200	0.57	-0.7
3,227,294	-		ABCV34_RS15200	0.57	-3.0
3,227,416	+		ABCV34_RS15200	0.86	-2.8
3,227,416	+		ABCV34_RS15200	0.86	-3.5
3,227,417	-		ABCV34_RS15200	0.86	-1.9
3,227,417	-		ABCV34_RS15200	0.86	-2.4
3,227,417	-		ABCV34_RS15200	0.86	-1.5
3,227,417	-		ABCV34_RS15200	0.86	-2.0
3,227,853	+		ABCV34_RS15205	0.19	-2.1
3,228,078	+		ABCV34_RS15205	0.41	-3.6
3,228,079	-		ABCV34_RS15205	0.41	-2.0