Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14810

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
3,145,138	+		ABCV34_RS14805	0.69	-4.5
3,145,138	+		ABCV34_RS14805	0.69	-4.7
3,145,138	+		ABCV34_RS14805	0.69	-4.0
3,145,138	+		ABCV34_RS14805	0.69	-5.4
3,145,265	+		ABCV34_RS14805	0.74	-5.5
3,145,265	+		ABCV34_RS14805	0.74	-6.6
3,145,265	+		ABCV34_RS14805	0.74	-5.2
3,145,265	+		ABCV34_RS14805	0.74	-6.2
3,145,265	+		ABCV34_RS14805	0.74	-5.2
3,145,265	+		ABCV34_RS14805	0.74	-6.9
3,145,265	+		ABCV34_RS14805	0.74	-4.8
3,145,266	-		ABCV34_RS14805	0.74	-6.0
3,145,266	-		ABCV34_RS14805	0.74	-6.9
3,145,266	-		ABCV34_RS14805	0.74	-6.8
3,145,266	-		ABCV34_RS14805	0.74	-4.2
3,145,360	+		ABCV34_RS14805	0.77	-6.0
3,145,360	+		ABCV34_RS14805	0.77	-4.3
3,145,360	+		ABCV34_RS14805	0.77	-2.7
3,145,360	+		ABCV34_RS14805	0.77	-5.2
3,145,360	+		ABCV34_RS14805	0.77	-4.8
3,145,360	+		ABCV34_RS14805	0.77	-5.5
3,145,360	+		ABCV34_RS14805	0.77	-4.6
3,145,360	+		ABCV34_RS14805	0.77	-5.1
3,145,360	+		ABCV34_RS14805	0.77	-4.0
3,145,361	-		ABCV34_RS14805	0.77	-6.1
3,145,361	-		ABCV34_RS14805	0.77	-3.5
3,145,361	-		ABCV34_RS14805	0.77	-6.5
3,145,363	+		ABCV34_RS14805	0.77	-5.8
3,145,363	+		ABCV34_RS14805	0.77	-3.3
3,145,364	-		ABCV34_RS14805	0.77	-6.5
3,145,765	+				-5.9
3,145,765	+				-4.3
3,145,765	+				-0.0
3,145,766	-				-1.6
3,145,766	-				-5.4
3,145,766	-				-5.9
3,145,766	-				-4.8
3,146,086	-				-3.6
3,146,090	+				-3.3
3,146,090	+				-2.7
3,146,090	+				-1.9
3,146,091	-				-1.4
3,146,091	-				-1.9
3,146,091	-				-1.0
3,146,091	-				-0.0
3,146,100	+				-5.1
3,146,101	-				-4.2
3,146,137	+				-3.4
3,146,138	-				-3.1
3,146,148	+				-2.1
3,146,401	+		ABCV34_RS14810	0.15	-4.7
3,146,401	+		ABCV34_RS14810	0.15	-0.0
3,146,401	+		ABCV34_RS14810	0.15	-4.8
3,146,401	+		ABCV34_RS14810	0.15	-3.2
3,146,401	+		ABCV34_RS14810	0.15	-4.2
3,146,402	-		ABCV34_RS14810	0.15	-3.0
3,146,402	-		ABCV34_RS14810	0.15	-5.4
3,146,402	-		ABCV34_RS14810	0.15	-3.0
3,146,402	-		ABCV34_RS14810	0.15	-4.3
3,146,402	-		ABCV34_RS14810	0.15	-4.2
3,146,402	-		ABCV34_RS14810	0.15	-2.9
3,146,402	-		ABCV34_RS14810	0.15	-4.6
3,146,402	-		ABCV34_RS14810	0.15	-5.4
3,146,443	+		ABCV34_RS14810	0.17	-3.3
3,146,443	+		ABCV34_RS14810	0.17	-5.0
3,146,443	+		ABCV34_RS14810	0.17	-2.8
3,146,443	+		ABCV34_RS14810	0.17	-4.5
3,146,443	+		ABCV34_RS14810	0.17	-3.1
3,146,443	+		ABCV34_RS14810	0.17	-0.0
3,146,443	+		ABCV34_RS14810	0.17	-0.0
3,146,443	+		ABCV34_RS14810	0.17	-3.3
3,146,443	+		ABCV34_RS14810	0.17	-3.7
3,146,443	+		ABCV34_RS14810	0.17	-3.5
3,146,443	+		ABCV34_RS14810	0.17	-4.9
3,146,443	+		ABCV34_RS14810	0.17	-5.0
3,146,443	+		ABCV34_RS14810	0.17	-2.9
3,146,443	+		ABCV34_RS14810	0.17	-4.7
3,146,443	+		ABCV34_RS14810	0.17	-1.6
3,146,443	+		ABCV34_RS14810	0.17	-0.0
3,146,443	+		ABCV34_RS14810	0.17	-1.8
3,146,443	+		ABCV34_RS14810	0.17	-5.3
3,146,443	+		ABCV34_RS14810	0.17	-0.0
3,146,443	+		ABCV34_RS14810	0.17	-3.8
3,146,444	-		ABCV34_RS14810	0.17	-3.8
3,146,444	-		ABCV34_RS14810	0.17	-3.2
3,146,444	-		ABCV34_RS14810	0.17	-2.3
3,146,444	-		ABCV34_RS14810	0.17	-4.5
3,146,444	-		ABCV34_RS14810	0.17	-3.0
3,146,444	-		ABCV34_RS14810	0.17	-4.5
3,146,444	-		ABCV34_RS14810	0.17	-3.0
3,146,444	-		ABCV34_RS14810	0.17	-2.8
3,146,444	-		ABCV34_RS14810	0.17	-3.4
3,146,444	-		ABCV34_RS14810	0.17	-4.2
3,146,444	-		ABCV34_RS14810	0.17	-4.7
3,146,444	-		ABCV34_RS14810	0.17	-4.2
3,146,444	-		ABCV34_RS14810	0.17	-3.2
3,146,444	-		ABCV34_RS14810	0.17	-0.0
3,146,444	-		ABCV34_RS14810	0.17	-4.9
3,146,444	-		ABCV34_RS14810	0.17	-4.9
3,146,444	-		ABCV34_RS14810	0.17	-2.3
3,146,444	-		ABCV34_RS14810	0.17	-3.5
3,146,734	-		ABCV34_RS14810	0.33	-3.2
3,146,734	-		ABCV34_RS14810	0.33	-4.1
3,146,876	-		ABCV34_RS14810	0.40	-2.8
3,146,977	-		ABCV34_RS14810	0.46	-3.9
3,146,977	-		ABCV34_RS14810	0.46	-3.2
3,146,977	-		ABCV34_RS14810	0.46	-2.2
3,146,977	-		ABCV34_RS14810	0.46	-1.7
3,147,097	+		ABCV34_RS14810	0.52	-3.8
3,147,097	+		ABCV34_RS14810	0.52	-2.4
3,147,097	+		ABCV34_RS14810	0.52	-3.7
3,147,097	+		ABCV34_RS14810	0.52	-2.7
3,147,098	-		ABCV34_RS14810	0.52	-0.0
3,147,322	+		ABCV34_RS14810	0.64	-3.3
3,147,323	-		ABCV34_RS14810	0.64	+1.0
3,147,323	-		ABCV34_RS14810	0.64	-3.3
3,147,323	-		ABCV34_RS14810	0.64	-3.1
3,147,325	+		ABCV34_RS14810	0.64	-0.0
3,147,325	+		ABCV34_RS14810	0.64	-2.9
3,147,326	-		ABCV34_RS14810	0.65	-0.0
3,147,382	+		ABCV34_RS14810	0.68	-4.0
3,147,382	+		ABCV34_RS14810	0.68	-3.1
3,147,382	+		ABCV34_RS14810	0.68	-6.2
3,147,382	+		ABCV34_RS14810	0.68	-0.0
3,147,412	+		ABCV34_RS14810	0.69	-4.5
3,147,412	+		ABCV34_RS14810	0.69	-4.0
3,147,413	-		ABCV34_RS14810	0.69	-2.8
3,147,413	-		ABCV34_RS14810	0.69	-2.3
3,147,499	+		ABCV34_RS14810	0.74	-5.3
3,147,500	-		ABCV34_RS14810	0.74	-5.3
3,147,614	+		ABCV34_RS14810	0.80	-0.0
3,147,614	+		ABCV34_RS14810	0.80	-2.3
3,147,614	+		ABCV34_RS14810	0.80	-1.9
3,147,614	+		ABCV34_RS14810	0.80	-4.1
3,147,614	+		ABCV34_RS14810	0.80	-3.4
3,147,614	+		ABCV34_RS14810	0.80	-3.8
3,147,614	+		ABCV34_RS14810	0.80	-2.1
3,147,614	+		ABCV34_RS14810	0.80	-3.6
3,147,614	+		ABCV34_RS14810	0.80	-3.1
3,147,614	+		ABCV34_RS14810	0.80	-2.8
3,147,614	+		ABCV34_RS14810	0.80	-3.6
3,147,614	+		ABCV34_RS14810	0.80	-5.3
3,147,614	+		ABCV34_RS14810	0.80	-4.5
3,147,614	+		ABCV34_RS14810	0.80	-4.4
3,147,614	+		ABCV34_RS14810	0.80	-0.0
3,147,614	+		ABCV34_RS14810	0.80	-0.0
3,147,615	-		ABCV34_RS14810	0.80	-2.0
3,147,615	-		ABCV34_RS14810	0.80	-4.4
3,147,615	-		ABCV34_RS14810	0.80	-2.3
3,147,615	-		ABCV34_RS14810	0.80	-3.3
3,147,615	-		ABCV34_RS14810	0.80	-2.9
3,147,615	-		ABCV34_RS14810	0.80	-5.8
3,147,615	-		ABCV34_RS14810	0.80	-2.3
3,147,615	-		ABCV34_RS14810	0.80	-1.0
3,147,615	-		ABCV34_RS14810	0.80	-5.1
3,147,615	-		ABCV34_RS14810	0.80	-4.0
3,147,615	-		ABCV34_RS14810	0.80	-3.1
3,147,615	-		ABCV34_RS14810	0.80	-0.0
3,147,615	-		ABCV34_RS14810	0.80	-4.3
3,147,615	-		ABCV34_RS14810	0.80	-3.7
3,147,615	-		ABCV34_RS14810	0.80	-4.8
3,147,615	-		ABCV34_RS14810	0.80	-1.8
3,147,615	-		ABCV34_RS14810	0.80	-3.7
3,147,615	-		ABCV34_RS14810	0.80	-0.0
3,147,615	-		ABCV34_RS14810	0.80	-3.3
3,147,615	-		ABCV34_RS14810	0.80	-4.6
3,147,616	+		ABCV34_RS14810	0.80	-0.0
3,147,617	-		ABCV34_RS14810	0.80	-3.3
3,147,617	-		ABCV34_RS14810	0.80	-4.0
3,147,628	+		ABCV34_RS14810	0.81	-3.6
3,147,628	+		ABCV34_RS14810	0.81	-5.6
3,147,628	+		ABCV34_RS14810	0.81	-3.7
3,147,629	-		ABCV34_RS14810	0.81	-3.3
3,147,629	-		ABCV34_RS14810	0.81	-5.3
3,147,629	-		ABCV34_RS14810	0.81	-3.2
3,147,629	-		ABCV34_RS14810	0.81	-5.7
3,147,629	-		ABCV34_RS14810	0.81	-3.5
3,147,629	-		ABCV34_RS14810	0.81	-3.9
3,147,629	-		ABCV34_RS14810	0.81	-3.3
3,147,748	-		ABCV34_RS14810	0.87	-0.0
3,147,772	-		ABCV34_RS14810	0.89	-3.2
3,147,922	+				-4.5
3,147,922	+				-4.7
3,147,923	-				-5.0
3,148,137	+		ABCV34_RS14815	0.21	-2.1
3,148,137	+		ABCV34_RS14815	0.21	-2.5
3,148,137	+		ABCV34_RS14815	0.21	-3.5
3,148,137	+		ABCV34_RS14815	0.21	-3.5
3,148,137	+		ABCV34_RS14815	0.21	-2.5
3,148,137	+		ABCV34_RS14815	0.21	-2.6
3,148,137	+		ABCV34_RS14815	0.21	-4.8
3,148,138	-		ABCV34_RS14815	0.22	-2.9
3,148,138	-		ABCV34_RS14815	0.22	-3.9
3,148,138	-		ABCV34_RS14815	0.22	-0.0
3,148,138	-		ABCV34_RS14815	0.22	-5.0
3,148,138	-		ABCV34_RS14815	0.22	-2.8
3,148,138	-		ABCV34_RS14815	0.22	-1.7
3,148,143	+		ABCV34_RS14815	0.22	+1.0
3,148,143	+		ABCV34_RS14815	0.22	-3.1
3,148,143	+		ABCV34_RS14815	0.22	-2.0
3,148,143	+		ABCV34_RS14815	0.22	-3.4
3,148,143	+		ABCV34_RS14815	0.22	-3.6
3,148,143	+		ABCV34_RS14815	0.22	-0.0
3,148,144	-		ABCV34_RS14815	0.22	-2.5
3,148,144	-		ABCV34_RS14815	0.22	-2.9
3,148,144	-		ABCV34_RS14815	0.22	-3.0
3,148,144	-		ABCV34_RS14815	0.22	-3.2
3,148,144	-		ABCV34_RS14815	0.22	-2.4
3,148,144	-		ABCV34_RS14815	0.22	-1.3
3,148,144	-		ABCV34_RS14815	0.22	-3.2
3,148,144	-		ABCV34_RS14815	0.22	-3.5
3,148,395	+		ABCV34_RS14815	0.59	-3.3
3,148,395	+		ABCV34_RS14815	0.59	-3.0
3,148,396	-		ABCV34_RS14815	0.59	-2.6
3,148,458	+		ABCV34_RS14815	0.68	-4.5
3,148,458	+		ABCV34_RS14815	0.68	-3.8
3,148,597	+		ABCV34_RS14815	0.88	-2.9
3,148,597	+		ABCV34_RS14815	0.88	-2.5
3,148,597	+		ABCV34_RS14815	0.88	-3.7
3,148,597	+		ABCV34_RS14815	0.88	-3.6
3,148,597	+		ABCV34_RS14815	0.88	-0.0
3,148,597	+		ABCV34_RS14815	0.88	-4.6
3,148,597	+		ABCV34_RS14815	0.88	-2.0
3,148,597	+		ABCV34_RS14815	0.88	-2.7
3,148,597	+		ABCV34_RS14815	0.88	-3.4
3,148,597	+		ABCV34_RS14815	0.88	-2.3
3,148,597	+		ABCV34_RS14815	0.88	+1.0
3,148,597	+		ABCV34_RS14815	0.88	-2.6
3,148,597	+		ABCV34_RS14815	0.88	-2.3
3,148,598	-		ABCV34_RS14815	0.89	-1.4
3,148,598	-		ABCV34_RS14815	0.89	-1.9
3,148,598	-		ABCV34_RS14815	0.89	-3.0
3,148,598	-		ABCV34_RS14815	0.89	-2.3
3,148,598	-		ABCV34_RS14815	0.89	-4.3
3,148,598	-		ABCV34_RS14815	0.89	-4.7
3,148,697	-				-2.5
3,148,745	+				-3.4
3,148,745	+				-2.9
3,148,745	+				-4.0
3,148,745	+				-2.2
3,148,745	+				-3.0
3,148,746	-				-4.4
3,148,746	-				-2.7
3,148,746	-				-1.6
3,148,763	-				-4.5
3,148,854	+				-1.9
3,148,854	+				-2.0
3,148,854	+				-3.0
3,148,854	+				-1.7
3,148,854	+				-4.6
3,148,854	+				-1.0
3,148,854	+				-0.0
3,148,854	+				-3.7
3,148,854	+				-1.5
3,148,854	+				-2.3
3,148,854	+				-2.5
3,148,855	-				-0.0
3,148,855	-				-3.7
3,148,855	-				-2.8
3,148,855	-				-3.5
3,148,855	-				-3.1
3,148,855	-				-2.7
3,148,855	-				-3.0
3,148,855	-				-2.2
3,148,855	-				-2.2
3,148,857	+				-0.2
3,148,858	-				-2.3
3,148,858	-				-1.5
3,148,858	-				-0.6
3,148,869	+				-3.9
3,148,869	+				-1.8
3,148,870	-				-1.8
3,148,940	+				-2.9