Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14440

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
3,058,762	+		ABCV34_RS14430	0.86	+1.0
3,058,764	+		ABCV34_RS14430	0.86	-0.0
3,058,764	+		ABCV34_RS14430	0.86	-0.6
3,058,764	+		ABCV34_RS14430	0.86	-1.6
3,058,764	+		ABCV34_RS14430	0.86	-1.7
3,058,764	+		ABCV34_RS14430	0.86	-1.3
3,058,764	+		ABCV34_RS14430	0.86	-0.0
3,058,764	+		ABCV34_RS14430	0.86	-1.3
3,058,764	+		ABCV34_RS14430	0.86	-0.0
3,058,765	-		ABCV34_RS14430	0.86	-1.9
3,058,765	-		ABCV34_RS14430	0.86	-0.2
3,058,881	+				-0.6
3,058,881	+				-1.8
3,058,881	+				-0.4
3,058,882	-				-1.8
3,058,882	-				-2.0
3,058,882	-				-0.2
3,058,882	-				-2.2
3,058,887	+				-2.3
3,058,887	+				-0.0
3,058,887	+				-0.0
3,058,887	+				-1.0
3,058,887	+				-0.4
3,058,887	+				-2.2
3,058,887	+				-1.9
3,058,887	+				-0.0
3,058,887	+				-4.4
3,058,887	+				-2.5
3,058,887	+				-2.7
3,058,888	-				-2.0
3,058,888	-				-1.2
3,058,888	-				-0.0
3,058,903	+				-2.5
3,058,903	+				-2.6
3,058,904	-				-0.7
3,058,904	-				-0.7
3,058,904	-				-0.8
3,058,904	-				-1.8
3,058,914	+				-2.5
3,058,915	-				-1.3
3,058,986	+				-0.0
3,058,986	+				-0.8
3,058,986	+				-0.8
3,058,986	+				-2.1
3,058,986	+				-2.1
3,058,986	+				-0.6
3,058,987	-				-0.0
3,058,987	-				-1.1
3,058,987	-				-2.7
3,058,987	-				-1.8
3,058,987	-				-2.6
3,058,987	-				-0.5
3,058,987	-				-2.0
3,058,987	-				-2.5
3,058,987	-				-2.2
3,058,987	-				-1.7
3,058,987	-				-1.9
3,058,992	+				-2.4
3,058,992	+				-0.3
3,058,992	+				-2.2
3,058,992	+				-2.0
3,058,992	+				-2.2
3,058,992	+				-0.3
3,058,993	-				-0.8
3,058,993	-				+2.3
3,058,993	-				-2.4
3,058,999	+				-0.8
3,059,000	-				-0.5
3,059,053	+				+1.5
3,059,053	+				-0.0
3,059,054	-				-1.0
3,059,054	-				-1.4
3,059,054	-				-0.5
3,059,054	-				-1.4
3,059,054	-				-0.7
3,059,054	-				-0.6
3,059,080	+		ABCV34_RS14435	0.12	-1.8
3,059,080	+		ABCV34_RS14435	0.12	-0.5
3,059,080	+		ABCV34_RS14435	0.12	-2.0
3,059,080	+		ABCV34_RS14435	0.12	-0.8
3,059,080	+		ABCV34_RS14435	0.12	+1.0
3,059,080	+		ABCV34_RS14435	0.12	-0.8
3,059,080	+		ABCV34_RS14435	0.12	-2.0
3,059,080	+		ABCV34_RS14435	0.12	-0.5
3,059,080	+		ABCV34_RS14435	0.12	-0.7
3,059,080	+		ABCV34_RS14435	0.12	-0.7
3,059,080	+		ABCV34_RS14435	0.12	-0.0
3,059,080	+		ABCV34_RS14435	0.12	-0.0
3,059,081	-		ABCV34_RS14435	0.12	-0.9
3,059,081	-		ABCV34_RS14435	0.12	-1.3
3,059,081	-		ABCV34_RS14435	0.12	-1.9
3,059,081	-		ABCV34_RS14435	0.12	-1.4
3,059,081	-		ABCV34_RS14435	0.12	-1.8
3,059,081	-		ABCV34_RS14435	0.12	-0.0
3,059,081	-		ABCV34_RS14435	0.12	-2.5
3,059,081	-		ABCV34_RS14435	0.12	-1.5
3,059,081	-		ABCV34_RS14435	0.12	-1.0
3,059,194	+		ABCV34_RS14435	0.27	-0.0
3,059,194	+		ABCV34_RS14435	0.27	-1.9
3,059,194	+		ABCV34_RS14435	0.27	-1.8
3,059,194	+		ABCV34_RS14435	0.27	-0.9
3,059,194	+		ABCV34_RS14435	0.27	-0.7
3,059,194	+		ABCV34_RS14435	0.27	-1.8
3,059,195	-		ABCV34_RS14435	0.27	-0.0
3,059,195	-		ABCV34_RS14435	0.27	-0.0
3,059,195	-		ABCV34_RS14435	0.27	+0.2
3,059,195	-		ABCV34_RS14435	0.27	-0.5
3,059,195	-		ABCV34_RS14435	0.27	-1.7
3,059,195	-		ABCV34_RS14435	0.27	-0.9
3,059,195	-		ABCV34_RS14435	0.27	-1.5
3,059,195	-		ABCV34_RS14435	0.27	-1.7
3,059,246	-		ABCV34_RS14435	0.34	-0.0
3,059,246	-		ABCV34_RS14435	0.34	-1.8
3,059,246	-		ABCV34_RS14435	0.34	-2.6
3,059,246	-		ABCV34_RS14435	0.34	-3.3
3,059,455	+		ABCV34_RS14435	0.62	-1.6
3,059,455	+		ABCV34_RS14435	0.62	-1.0
3,059,455	+		ABCV34_RS14435	0.62	-0.7
3,059,455	+		ABCV34_RS14435	0.62	-1.9
3,059,455	+		ABCV34_RS14435	0.62	-0.6
3,059,456	-		ABCV34_RS14435	0.62	-1.5
3,059,456	-		ABCV34_RS14435	0.62	-0.0
3,059,456	-		ABCV34_RS14435	0.62	-0.7
3,059,456	-		ABCV34_RS14435	0.62	-1.9
3,059,456	-		ABCV34_RS14435	0.62	-2.0
3,059,456	-		ABCV34_RS14435	0.62	-0.0
3,059,456	-		ABCV34_RS14435	0.62	-1.0
3,059,456	-		ABCV34_RS14435	0.62	-1.1
3,059,456	-		ABCV34_RS14435	0.62	-0.0
3,059,456	-		ABCV34_RS14435	0.62	-0.4
3,059,520	+		ABCV34_RS14435	0.71	-2.3
3,059,520	+		ABCV34_RS14435	0.71	-1.8
3,059,520	+		ABCV34_RS14435	0.71	-1.9
3,059,521	-		ABCV34_RS14435	0.71	-1.5
3,059,521	-		ABCV34_RS14435	0.71	-1.5
3,059,644	+		ABCV34_RS14435	0.88	-2.4
3,059,644	+		ABCV34_RS14435	0.88	-1.1
3,059,644	+		ABCV34_RS14435	0.88	-1.5
3,059,644	+		ABCV34_RS14435	0.88	-2.2
3,059,644	+		ABCV34_RS14435	0.88	-1.7
3,059,644	+		ABCV34_RS14435	0.88	-0.2
3,059,644	+		ABCV34_RS14435	0.88	-4.2
3,059,644	+		ABCV34_RS14435	0.88	-2.0
3,059,644	+		ABCV34_RS14435	0.88	-2.5
3,059,645	-		ABCV34_RS14435	0.88	-1.8
3,059,645	-		ABCV34_RS14435	0.88	-1.5
3,059,645	-		ABCV34_RS14435	0.88	-1.9
3,059,645	-		ABCV34_RS14435	0.88	-0.8
3,059,645	-		ABCV34_RS14435	0.88	-1.2
3,059,645	-		ABCV34_RS14435	0.88	-1.8
3,059,777	+				-2.5
3,059,778	-				-2.1
3,059,788	-				-0.3
3,059,788	-				-0.9
3,059,788	-				-1.8
3,059,922	+		ABCV34_RS14440	0.26	-0.9
3,059,922	+		ABCV34_RS14440	0.26	-0.9
3,059,922	+		ABCV34_RS14440	0.26	-0.7
3,059,922	+		ABCV34_RS14440	0.26	-2.2
3,059,922	+		ABCV34_RS14440	0.26	-0.0
3,059,923	-		ABCV34_RS14440	0.26	-1.5
3,059,923	-		ABCV34_RS14440	0.26	-2.5
3,059,923	-		ABCV34_RS14440	0.26	-2.0
3,059,923	-		ABCV34_RS14440	0.26	-0.4
3,059,923	-		ABCV34_RS14440	0.26	-0.8
3,059,923	-		ABCV34_RS14440	0.26	-1.0
3,059,923	-		ABCV34_RS14440	0.26	-2.4
3,059,923	-		ABCV34_RS14440	0.26	-2.2
3,059,973	+		ABCV34_RS14440	0.33	-1.3
3,059,988	+		ABCV34_RS14440	0.35	-0.6
3,059,988	+		ABCV34_RS14440	0.35	-2.6
3,059,989	-		ABCV34_RS14440	0.35	-0.5
3,059,989	-		ABCV34_RS14440	0.35	-0.5
3,060,041	+		ABCV34_RS14440	0.43	-2.5
3,060,041	+		ABCV34_RS14440	0.43	-0.6
3,060,041	+		ABCV34_RS14440	0.43	-0.5
3,060,042	-		ABCV34_RS14440	0.43	-0.0
3,060,042	-		ABCV34_RS14440	0.43	-0.9
3,060,042	-		ABCV34_RS14440	0.43	-1.0
3,060,042	-		ABCV34_RS14440	0.43	-2.9
3,060,081	+		ABCV34_RS14440	0.49	-2.8
3,060,081	+		ABCV34_RS14440	0.49	-0.0
3,060,082	-		ABCV34_RS14440	0.49	-1.6
3,060,082	-		ABCV34_RS14440	0.49	-0.9
3,060,082	-		ABCV34_RS14440	0.49	-1.8
3,060,082	-		ABCV34_RS14440	0.49	-2.1
3,060,144	+		ABCV34_RS14440	0.58	-2.0
3,060,162	+		ABCV34_RS14440	0.60	-0.9
3,060,162	+		ABCV34_RS14440	0.60	-2.1
3,060,162	+		ABCV34_RS14440	0.60	-0.0
3,060,162	+		ABCV34_RS14440	0.60	-2.6
3,060,163	-		ABCV34_RS14440	0.61	-1.6
3,060,163	-		ABCV34_RS14440	0.61	-0.6
3,060,163	-		ABCV34_RS14440	0.61	-3.5
3,060,267	+		ABCV34_RS14440	0.76	-2.5
3,060,267	+		ABCV34_RS14440	0.76	-2.2
3,060,267	+		ABCV34_RS14440	0.76	-0.0
3,060,267	+		ABCV34_RS14440	0.76	-0.0
3,060,267	+		ABCV34_RS14440	0.76	-0.8
3,060,267	+		ABCV34_RS14440	0.76	-1.0
3,060,267	+		ABCV34_RS14440	0.76	-0.8
3,060,267	+		ABCV34_RS14440	0.76	-1.5
3,060,267	+		ABCV34_RS14440	0.76	-0.0
3,060,267	+		ABCV34_RS14440	0.76	-1.2
3,060,267	+		ABCV34_RS14440	0.76	-0.4
3,060,267	+		ABCV34_RS14440	0.76	-2.1
3,060,267	+		ABCV34_RS14440	0.76	-0.0
3,060,267	+		ABCV34_RS14440	0.76	-0.0
3,060,267	+		ABCV34_RS14440	0.76	-1.5
3,060,267	+		ABCV34_RS14440	0.76	-2.4
3,060,267	+		ABCV34_RS14440	0.76	-1.8
3,060,267	+		ABCV34_RS14440	0.76	-1.0
3,060,268	-		ABCV34_RS14440	0.76	-3.4
3,060,268	-		ABCV34_RS14440	0.76	-2.4
3,060,268	-		ABCV34_RS14440	0.76	-1.4
3,060,268	-		ABCV34_RS14440	0.76	-2.2
3,060,268	-		ABCV34_RS14440	0.76	-3.3
3,060,268	-		ABCV34_RS14440	0.76	-0.0
3,060,268	-		ABCV34_RS14440	0.76	-2.0
3,060,268	-		ABCV34_RS14440	0.76	-0.8
3,060,268	-		ABCV34_RS14440	0.76	-0.6
3,060,268	-		ABCV34_RS14440	0.76	-1.3
3,060,268	-		ABCV34_RS14440	0.76	-0.4
3,060,268	-		ABCV34_RS14440	0.76	-0.8
3,060,268	-		ABCV34_RS14440	0.76	-3.7
3,060,268	-		ABCV34_RS14440	0.76	-1.3
3,060,268	-		ABCV34_RS14440	0.76	-0.5
3,060,268	-		ABCV34_RS14440	0.76	-0.6
3,060,363	+		ABCV34_RS14440	0.90	-1.0
3,060,364	-		ABCV34_RS14440	0.90	-1.2
3,060,378	+				+1.0
3,060,378	+				-3.2
3,060,433	-				-1.8
3,060,480	+				-0.0
3,060,480	+				-2.0
3,060,480	+				-0.7
3,060,481	-				-1.4
3,060,481	-				-2.5
3,060,481	-				-2.2
3,060,566	+		ABCV34_RS14445	0.16	-1.9
3,060,566	+		ABCV34_RS14445	0.16	-2.1
3,060,566	+		ABCV34_RS14445	0.16	-1.6
3,060,566	+		ABCV34_RS14445	0.16	-2.6
3,060,566	+		ABCV34_RS14445	0.16	-0.7
3,060,566	+		ABCV34_RS14445	0.16	-1.0
3,060,566	+		ABCV34_RS14445	0.16	-0.0
3,060,566	+		ABCV34_RS14445	0.16	-2.1
3,060,566	+		ABCV34_RS14445	0.16	-1.6
3,060,567	-		ABCV34_RS14445	0.16	-1.7
3,060,567	-		ABCV34_RS14445	0.16	-2.2
3,060,567	-		ABCV34_RS14445	0.16	-0.8
3,060,567	-		ABCV34_RS14445	0.16	-1.5
3,060,567	-		ABCV34_RS14445	0.16	-2.3
3,060,846	+		ABCV34_RS14445	0.54	-2.3
3,060,846	+		ABCV34_RS14445	0.54	-0.9
3,060,846	+		ABCV34_RS14445	0.54	-0.9
3,060,847	-		ABCV34_RS14445	0.54	-0.7
3,060,847	-		ABCV34_RS14445	0.54	-0.4
3,060,847	-		ABCV34_RS14445	0.54	-1.4
3,061,308	+				-1.9
3,061,315	+				-2.2
3,061,316	-				-1.4
3,061,359	+				-2.0
3,061,359	+				-1.5
3,061,359	+				-2.7
3,061,359	+				-2.1
3,061,359	+				-3.0
3,061,359	+				-1.9
3,061,360	-				-3.2
3,061,381	+				-3.5
3,061,381	+				-2.8
3,061,382	-				-2.9
3,061,382	-				-1.6
3,061,382	-				-2.9