Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12140

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
2,561,410	+				-3.5
2,561,410	+				-3.7
2,561,410	+				-1.8
2,561,411	-				-3.4
2,561,411	-				-4.2
2,561,434	+				-0.7
2,561,434	+				-1.8
2,561,434	+				-2.9
2,561,434	+				-4.7
2,561,434	+				-1.7
2,561,434	+				-3.1
2,561,434	+				-2.1
2,561,434	+				-2.4
2,561,434	+				-3.1
2,561,434	+				-0.1
2,561,434	+				-3.0
2,561,434	+				-5.3
2,561,435	-				-2.1
2,561,435	-				-2.0
2,561,435	-				-2.5
2,561,435	-				-2.9
2,561,435	-				-5.6
2,561,435	-				-3.0
2,561,490	-				-2.0
2,561,556	+				-1.0
2,561,557	-				-1.5
2,561,557	-				-1.8
2,561,557	-				-4.2
2,561,557	-				-5.5
2,561,557	-				-3.0
2,561,557	-				-3.1
2,561,581	-		ABCV34_RS12135	0.10	-2.5
2,561,616	+		ABCV34_RS12135	0.15	-0.1
2,561,616	+		ABCV34_RS12135	0.15	-3.7
2,561,616	+		ABCV34_RS12135	0.15	-4.7
2,561,616	+		ABCV34_RS12135	0.15	-2.9
2,561,617	-		ABCV34_RS12135	0.15	-2.7
2,561,617	-		ABCV34_RS12135	0.15	-2.2
2,561,671	+		ABCV34_RS12135	0.22	-2.7
2,561,671	+		ABCV34_RS12135	0.22	-2.5
2,561,672	-		ABCV34_RS12135	0.22	-4.5
2,561,672	-		ABCV34_RS12135	0.22	-0.1
2,561,672	-		ABCV34_RS12135	0.22	-3.9
2,561,739	+		ABCV34_RS12135	0.31	-0.1
2,561,739	+		ABCV34_RS12135	0.31	-2.9
2,561,739	+		ABCV34_RS12135	0.31	-0.1
2,561,739	+		ABCV34_RS12135	0.31	-0.8
2,561,739	+		ABCV34_RS12135	0.31	-2.9
2,561,739	+		ABCV34_RS12135	0.31	-3.5
2,561,739	+		ABCV34_RS12135	0.31	-1.5
2,561,739	+		ABCV34_RS12135	0.31	-4.8
2,561,739	+		ABCV34_RS12135	0.31	-4.0
2,561,739	+		ABCV34_RS12135	0.31	-3.2
2,561,739	+		ABCV34_RS12135	0.31	-0.1
2,561,740	-		ABCV34_RS12135	0.31	-2.9
2,561,740	-		ABCV34_RS12135	0.31	-0.1
2,561,740	-		ABCV34_RS12135	0.31	-3.5
2,561,740	-		ABCV34_RS12135	0.31	+1.9
2,561,740	-		ABCV34_RS12135	0.31	-3.8
2,561,740	-		ABCV34_RS12135	0.31	-2.8
2,561,740	-		ABCV34_RS12135	0.31	-2.3
2,561,740	-		ABCV34_RS12135	0.31	-0.1
2,561,740	-		ABCV34_RS12135	0.31	-4.7
2,561,740	-		ABCV34_RS12135	0.31	-4.2
2,561,740	-		ABCV34_RS12135	0.31	-2.3
2,561,740	-		ABCV34_RS12135	0.31	-3.9
2,561,740	-		ABCV34_RS12135	0.31	-3.7
2,561,740	-		ABCV34_RS12135	0.31	-2.5
2,561,740	-		ABCV34_RS12135	0.31	-4.0
2,561,740	-		ABCV34_RS12135	0.31	-4.0
2,561,740	-		ABCV34_RS12135	0.31	-2.9
2,561,740	-		ABCV34_RS12135	0.31	-3.2
2,561,748	+		ABCV34_RS12135	0.32	-1.3
2,561,749	-		ABCV34_RS12135	0.32	-2.0
2,561,749	-		ABCV34_RS12135	0.32	-2.4
2,561,839	+		ABCV34_RS12135	0.44	-2.0
2,561,839	+		ABCV34_RS12135	0.44	-2.4
2,561,839	+		ABCV34_RS12135	0.44	-0.1
2,561,839	+		ABCV34_RS12135	0.44	-3.6
2,561,839	+		ABCV34_RS12135	0.44	-1.5
2,561,839	+		ABCV34_RS12135	0.44	-4.2
2,561,839	+		ABCV34_RS12135	0.44	-3.5
2,561,839	+		ABCV34_RS12135	0.44	-3.0
2,561,839	+		ABCV34_RS12135	0.44	-3.1
2,561,840	-		ABCV34_RS12135	0.44	-2.1
2,561,840	-		ABCV34_RS12135	0.44	-2.9
2,561,840	-		ABCV34_RS12135	0.44	-1.8
2,561,840	-		ABCV34_RS12135	0.44	-3.8
2,561,840	-		ABCV34_RS12135	0.44	-2.7
2,561,840	-		ABCV34_RS12135	0.44	-2.1
2,562,000	+		ABCV34_RS12135	0.64	-0.1
2,562,000	+		ABCV34_RS12135	0.64	-2.1
2,562,000	+		ABCV34_RS12135	0.64	-2.2
2,562,001	-		ABCV34_RS12135	0.64	-0.7
2,562,001	-		ABCV34_RS12135	0.64	-2.1
2,562,159	+		ABCV34_RS12135	0.85	-0.1
2,562,159	+		ABCV34_RS12135	0.85	-5.4
2,562,160	-		ABCV34_RS12135	0.85	-2.6
2,562,160	-		ABCV34_RS12135	0.85	-3.2
2,562,160	-		ABCV34_RS12135	0.85	-2.6
2,562,177	+		ABCV34_RS12135	0.87	-1.5
2,562,177	+		ABCV34_RS12135	0.87	-1.7
2,562,177	+		ABCV34_RS12135	0.87	-3.9
2,562,178	-		ABCV34_RS12135	0.87	-1.7
2,562,245	+				-3.0
2,562,245	+				-3.4
2,562,245	+				-1.6
2,562,245	+				-2.5
2,562,246	-				-1.7
2,562,246	-				-2.9
2,562,435	+				-0.1
2,562,435	+				-2.2
2,562,435	+				-0.7
2,562,435	+				-2.3
2,562,435	+				-0.1
2,562,435	+				-5.2
2,562,435	+				-2.2
2,562,436	-				-3.6
2,562,436	-				+0.9
2,562,436	-				+1.5
2,562,436	-				-3.5
2,562,436	-				-3.9
2,562,436	-				-4.0
2,562,436	-				-2.8
2,562,647	+		ABCV34_RS12140	0.17	-1.9
2,562,647	+		ABCV34_RS12140	0.17	-3.0
2,562,648	-		ABCV34_RS12140	0.17	-2.2
2,562,648	-		ABCV34_RS12140	0.17	-3.3
2,562,648	-		ABCV34_RS12140	0.17	-4.5
2,562,692	+		ABCV34_RS12140	0.20	-0.1
2,562,692	+		ABCV34_RS12140	0.20	-3.5
2,562,692	+		ABCV34_RS12140	0.20	-0.1
2,562,692	+		ABCV34_RS12140	0.20	-0.1
2,562,693	-		ABCV34_RS12140	0.20	-1.9
2,562,693	-		ABCV34_RS12140	0.20	-3.6
2,562,693	-		ABCV34_RS12140	0.20	-2.3
2,562,693	-		ABCV34_RS12140	0.20	-2.2
2,562,693	-		ABCV34_RS12140	0.20	-4.0
2,562,693	-		ABCV34_RS12140	0.20	-0.1
2,562,699	+		ABCV34_RS12140	0.20	-3.1
2,562,699	+		ABCV34_RS12140	0.20	-2.3
2,562,699	+		ABCV34_RS12140	0.20	-0.1
2,562,700	-		ABCV34_RS12140	0.20	-2.2
2,562,700	-		ABCV34_RS12140	0.20	-1.8
2,562,719	+		ABCV34_RS12140	0.21	-3.6
2,562,719	+		ABCV34_RS12140	0.21	-2.0
2,562,719	+		ABCV34_RS12140	0.21	-3.7
2,562,719	+		ABCV34_RS12140	0.21	-1.7
2,562,719	+		ABCV34_RS12140	0.21	-2.0
2,562,719	+		ABCV34_RS12140	0.21	-3.6
2,562,719	+		ABCV34_RS12140	0.21	-3.0
2,562,719	+		ABCV34_RS12140	0.21	-2.2
2,562,719	+		ABCV34_RS12140	0.21	-3.3
2,562,719	+		ABCV34_RS12140	0.21	-2.9
2,562,719	+		ABCV34_RS12140	0.21	-1.8
2,562,719	+		ABCV34_RS12140	0.21	-3.7
2,562,719	+		ABCV34_RS12140	0.21	-2.7
2,562,719	+		ABCV34_RS12140	0.21	-3.1
2,562,719	+		ABCV34_RS12140	0.21	-1.9
2,562,719	+		ABCV34_RS12140	0.21	-3.6
2,562,719	+		ABCV34_RS12140	0.21	-2.6
2,562,720	-		ABCV34_RS12140	0.21	-1.9
2,562,720	-		ABCV34_RS12140	0.21	-3.5
2,562,720	-		ABCV34_RS12140	0.21	-1.7
2,562,720	-		ABCV34_RS12140	0.21	-2.3
2,562,720	-		ABCV34_RS12140	0.21	-2.5
2,562,720	-		ABCV34_RS12140	0.21	-4.3
2,562,720	-		ABCV34_RS12140	0.21	-3.3
2,562,720	-		ABCV34_RS12140	0.21	-3.2
2,562,720	-		ABCV34_RS12140	0.21	-1.7
2,562,720	-		ABCV34_RS12140	0.21	-0.1
2,562,720	-		ABCV34_RS12140	0.21	-1.6
2,562,720	-		ABCV34_RS12140	0.21	-3.7
2,562,720	-		ABCV34_RS12140	0.21	-4.0
2,562,720	-		ABCV34_RS12140	0.21	-1.1
2,562,720	-		ABCV34_RS12140	0.21	-2.0
2,562,811	-		ABCV34_RS12140	0.26	-1.3
2,562,811	-		ABCV34_RS12140	0.26	-2.2
2,562,811	-		ABCV34_RS12140	0.26	-2.2
2,562,950	+		ABCV34_RS12140	0.34	-4.1
2,562,950	+		ABCV34_RS12140	0.34	-3.3
2,562,951	-		ABCV34_RS12140	0.34	-2.3
2,562,951	-		ABCV34_RS12140	0.34	-3.8
2,562,990	-		ABCV34_RS12140	0.36	-3.5
2,563,094	+		ABCV34_RS12140	0.42	-2.1
2,563,096	+		ABCV34_RS12140	0.42	-1.7
2,563,096	+		ABCV34_RS12140	0.42	-1.4
2,563,096	+		ABCV34_RS12140	0.42	-2.6
2,563,096	+		ABCV34_RS12140	0.42	-2.9
2,563,097	-		ABCV34_RS12140	0.42	-2.1
2,563,097	-		ABCV34_RS12140	0.42	-3.9
2,563,247	+		ABCV34_RS12140	0.51	-2.5
2,563,248	-		ABCV34_RS12140	0.51	-3.3
2,563,248	-		ABCV34_RS12140	0.51	-3.5
2,563,248	-		ABCV34_RS12140	0.51	-0.1
2,563,248	-		ABCV34_RS12140	0.51	-2.3
2,563,248	-		ABCV34_RS12140	0.51	+1.9
2,563,571	+		ABCV34_RS12140	0.69	-3.3
2,563,571	+		ABCV34_RS12140	0.69	-2.2
2,563,572	-		ABCV34_RS12140	0.69	-2.3
2,563,589	+		ABCV34_RS12140	0.70	-4.5
2,563,589	+		ABCV34_RS12140	0.70	+1.9
2,563,589	+		ABCV34_RS12140	0.70	-3.5
2,563,589	+		ABCV34_RS12140	0.70	-2.4
2,563,589	+		ABCV34_RS12140	0.70	-4.6
2,563,589	+		ABCV34_RS12140	0.70	-3.7
2,563,589	+		ABCV34_RS12140	0.70	-4.3
2,563,589	+		ABCV34_RS12140	0.70	-3.4
2,563,589	+		ABCV34_RS12140	0.70	-2.4
2,563,590	-		ABCV34_RS12140	0.70	-0.1
2,563,590	-		ABCV34_RS12140	0.70	-1.6
2,563,590	-		ABCV34_RS12140	0.70	-0.1
2,563,590	-		ABCV34_RS12140	0.70	-2.3
2,563,590	-		ABCV34_RS12140	0.70	-1.1
2,563,642	+		ABCV34_RS12140	0.73	-3.7
2,563,642	+		ABCV34_RS12140	0.73	+0.9
2,563,642	+		ABCV34_RS12140	0.73	-3.1
2,563,859	+		ABCV34_RS12140	0.85	-2.9
2,563,859	+		ABCV34_RS12140	0.85	-1.1
2,563,859	+		ABCV34_RS12140	0.85	-2.1
2,563,859	+		ABCV34_RS12140	0.85	+1.5
2,563,860	-		ABCV34_RS12140	0.85	-2.9
2,563,860	-		ABCV34_RS12140	0.85	-3.4
2,563,860	-		ABCV34_RS12140	0.85	-2.2
2,563,940	+		ABCV34_RS12140	0.90	-2.4
2,563,940	+		ABCV34_RS12140	0.90	-0.1
2,563,940	+		ABCV34_RS12140	0.90	-2.2
2,563,940	+		ABCV34_RS12140	0.90	-3.7
2,563,940	+		ABCV34_RS12140	0.90	-4.1
2,563,941	-		ABCV34_RS12140	0.90	+1.5
2,563,941	-		ABCV34_RS12140	0.90	-0.1
2,563,941	-		ABCV34_RS12140	0.90	-1.2
2,563,941	-		ABCV34_RS12140	0.90	-2.0
2,563,941	-		ABCV34_RS12140	0.90	-2.8
2,564,021	+				-2.2
2,564,021	+				-0.1
2,564,021	+				-2.2
2,564,021	+				-2.3
2,564,022	-				-3.3
2,564,022	-				-3.7
2,564,022	-				+1.5
2,564,022	-				-1.4
2,564,022	-				-2.2
2,564,022	-				-2.9
2,564,101	+				-2.1
2,564,101	+				+1.5
2,564,102	-				-1.8
2,564,102	-				-1.7
2,564,162	+				-1.9
2,564,162	+				-3.3
2,564,162	+				-1.1
2,564,162	+				-2.7
2,564,163	-				-1.9
2,564,163	-				-3.3
2,564,163	-				-2.3
2,564,215	+				-0.1
2,564,215	+				-1.3
2,564,215	+				-1.9
2,564,215	+				-1.9
2,564,216	-				-1.5
2,564,216	-				-2.1
2,564,216	-				-2.6
2,564,216	-				-2.5
2,564,216	-				-0.1
2,564,216	-				-1.0
2,564,217	+				-2.9
2,564,217	+				-4.0
2,564,217	+				-2.6
2,564,217	+				-2.1
2,564,217	+				-2.7
2,564,217	+				-3.7
2,564,218	-				-0.1
2,564,218	-				-3.1
2,564,218	-				-3.0
2,564,218	-				-4.1
2,564,218	-				-2.0
2,564,218	-				-2.3
2,564,218	-				-3.0
2,564,218	-				-3.1
2,564,218	-				-2.0
2,564,218	-				-4.7
2,564,218	-				-3.8
2,564,218	-				-3.4
2,564,218	-				-2.4
2,564,221	+				+1.5
2,564,221	+				-2.8
2,564,221	+				-2.2
2,564,221	+				-3.2
2,564,221	+				-2.1
2,564,221	+				-1.8
2,564,221	+				-1.8
2,564,221	+				-2.0
2,564,222	-				-2.6
2,564,222	-				-1.3
2,564,222	-				-3.6
2,564,222	-				-3.1
2,564,222	-				-5.0
2,564,222	-				-1.8
2,564,222	-				-0.1
2,564,222	-				-2.5
2,564,222	-				-2.7
2,564,226	-				-1.5
2,564,226	-				-2.7
2,564,226	-				-3.4
2,564,226	-				-2.4
2,564,239	+				-0.1
2,564,240	-				-0.1
2,564,245	-				-3.9
2,564,288	-				+1.5
2,564,288	-				-2.7
2,564,298	+				-0.1
2,564,310	-				-1.7
2,564,646	-		ABCV34_RS12145	0.40	-3.2
2,564,692	+		ABCV34_RS12145	0.45	-2.9
2,564,692	+		ABCV34_RS12145	0.45	-1.4
2,564,693	-		ABCV34_RS12145	0.45	+2.5
2,564,734	+		ABCV34_RS12145	0.50	-3.0
2,564,734	+		ABCV34_RS12145	0.50	-3.4
2,564,734	+		ABCV34_RS12145	0.50	-1.6
2,564,734	+		ABCV34_RS12145	0.50	-2.3
2,564,734	+		ABCV34_RS12145	0.50	-1.8
2,564,735	-		ABCV34_RS12145	0.50	-3.9
2,564,735	-		ABCV34_RS12145	0.50	-3.9
2,564,735	-		ABCV34_RS12145	0.50	-3.8
2,564,735	-		ABCV34_RS12145	0.50	-3.2
2,564,735	-		ABCV34_RS12145	0.50	-0.1
2,564,735	-		ABCV34_RS12145	0.50	-1.4
2,564,788	+		ABCV34_RS12145	0.56	-3.5
2,564,788	+		ABCV34_RS12145	0.56	-2.9
2,564,788	+		ABCV34_RS12145	0.56	-2.9
2,564,789	-		ABCV34_RS12145	0.56	-0.1
2,564,789	-		ABCV34_RS12145	0.56	-1.8
2,564,959	+		ABCV34_RS12145	0.74	-2.3
2,564,959	+		ABCV34_RS12145	0.74	-1.7
2,564,960	-		ABCV34_RS12145	0.74	-0.8
2,564,960	-		ABCV34_RS12145	0.74	-3.6
2,565,073	+		ABCV34_RS12145	0.87	-0.1
2,565,073	+		ABCV34_RS12145	0.87	-0.1
2,565,073	+		ABCV34_RS12145	0.87	-0.1
2,565,073	+		ABCV34_RS12145	0.87	-3.3
2,565,073	+		ABCV34_RS12145	0.87	-4.8
2,565,074	-		ABCV34_RS12145	0.87	-2.7
2,565,074	-		ABCV34_RS12145	0.87	-2.1
2,565,074	-		ABCV34_RS12145	0.87	-1.9
2,565,074	-		ABCV34_RS12145	0.87	-2.3
2,565,106	+				-2.5
2,565,107	-				-3.1
2,565,107	-				-1.9
2,565,107	-				-4.3