Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS08005

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
1,708,490	+				-3.3
1,708,490	+				-1.1
1,708,491	-				-2.4
1,708,611	-		ABCV34_RS08000	0.17	-1.4
1,708,625	+		ABCV34_RS08000	0.18	-2.7
1,708,625	+		ABCV34_RS08000	0.18	-2.7
1,708,626	-		ABCV34_RS08000	0.18	-1.1
1,708,834	+		ABCV34_RS08000	0.38	-0.1
1,708,835	-		ABCV34_RS08000	0.38	-1.7
1,708,835	-		ABCV34_RS08000	0.38	-1.9
1,708,958	+		ABCV34_RS08000	0.50	-1.8
1,708,959	-		ABCV34_RS08000	0.50	-2.1
1,708,959	-		ABCV34_RS08000	0.50	-2.2
1,708,959	-		ABCV34_RS08000	0.50	-3.9
1,709,003	+		ABCV34_RS08000	0.54	-3.0
1,709,003	+		ABCV34_RS08000	0.54	-0.1
1,709,003	+		ABCV34_RS08000	0.54	-3.3
1,709,003	+		ABCV34_RS08000	0.54	-0.1
1,709,003	+		ABCV34_RS08000	0.54	-2.1
1,709,003	+		ABCV34_RS08000	0.54	-1.9
1,709,003	+		ABCV34_RS08000	0.54	-0.8
1,709,004	-		ABCV34_RS08000	0.54	-4.4
1,709,004	-		ABCV34_RS08000	0.54	-1.7
1,709,048	+		ABCV34_RS08000	0.58	-1.1
1,709,048	+		ABCV34_RS08000	0.58	-1.7
1,709,048	+		ABCV34_RS08000	0.58	-1.8
1,709,049	-		ABCV34_RS08000	0.58	-1.1
1,709,049	-		ABCV34_RS08000	0.58	-3.4
1,709,049	-		ABCV34_RS08000	0.58	-3.4
1,709,049	-		ABCV34_RS08000	0.58	-3.4
1,709,192	+		ABCV34_RS08000	0.72	-2.4
1,709,192	+		ABCV34_RS08000	0.72	-2.4
1,709,192	+		ABCV34_RS08000	0.72	-2.4
1,709,192	+		ABCV34_RS08000	0.72	-0.1
1,709,192	+		ABCV34_RS08000	0.72	-1.1
1,709,193	-		ABCV34_RS08000	0.72	-2.7
1,709,193	-		ABCV34_RS08000	0.72	-1.9
1,709,193	-		ABCV34_RS08000	0.72	-2.7
1,709,193	-		ABCV34_RS08000	0.72	-3.5
1,709,193	-		ABCV34_RS08000	0.72	-2.5
1,709,193	-		ABCV34_RS08000	0.72	-1.7
1,709,193	-		ABCV34_RS08000	0.72	-3.3
1,709,193	-		ABCV34_RS08000	0.72	-2.9
1,709,193	-		ABCV34_RS08000	0.72	-4.4
1,709,223	-		ABCV34_RS08000	0.75	-1.6
1,709,572	+				-1.1
1,709,572	+				-0.1
1,709,572	+				-1.0
1,709,572	+				-3.4
1,709,572	+				+0.9
1,709,572	+				-3.6
1,709,572	+				-4.1
1,709,573	-				-2.1
1,709,573	-				-2.9
1,709,573	-				-1.4
1,709,573	-				-0.2
1,709,573	-				-3.3
1,709,573	-				-2.1
1,709,573	-				-2.1
1,709,573	-				-2.1
1,709,587	-				-3.5
1,709,656	+		ABCV34_RS08005	0.12	-3.1
1,709,656	+		ABCV34_RS08005	0.12	-4.6
1,709,656	+		ABCV34_RS08005	0.12	-0.1
1,709,657	-		ABCV34_RS08005	0.12	-4.1
1,709,866	+		ABCV34_RS08005	0.27	-2.7
1,709,866	+		ABCV34_RS08005	0.27	-2.4
1,709,866	+		ABCV34_RS08005	0.27	-2.1
1,709,866	+		ABCV34_RS08005	0.27	-2.5
1,709,866	+		ABCV34_RS08005	0.27	-2.1
1,709,866	+		ABCV34_RS08005	0.27	-0.1
1,709,866	+		ABCV34_RS08005	0.27	-3.4
1,709,866	+		ABCV34_RS08005	0.27	-3.1
1,709,867	-		ABCV34_RS08005	0.27	-3.1
1,709,867	-		ABCV34_RS08005	0.27	-3.1
1,709,867	-		ABCV34_RS08005	0.27	-2.7
1,709,867	-		ABCV34_RS08005	0.27	-2.7
1,709,867	-		ABCV34_RS08005	0.27	-0.1
1,709,867	-		ABCV34_RS08005	0.27	-3.8
1,709,867	-		ABCV34_RS08005	0.27	-2.7
1,709,867	-		ABCV34_RS08005	0.27	-3.3
1,710,288	-		ABCV34_RS08005	0.57	-0.1
1,710,288	-		ABCV34_RS08005	0.57	-4.1
1,710,550	+		ABCV34_RS08005	0.76	-4.6
1,710,550	+		ABCV34_RS08005	0.76	+1.9
1,710,550	+		ABCV34_RS08005	0.76	-3.9
1,710,550	+		ABCV34_RS08005	0.76	-3.1
1,710,550	+		ABCV34_RS08005	0.76	-4.0
1,710,551	-		ABCV34_RS08005	0.76	-3.6
1,710,551	-		ABCV34_RS08005	0.76	-4.1
1,710,551	-		ABCV34_RS08005	0.76	-1.7
1,710,551	-		ABCV34_RS08005	0.76	-2.9
1,710,551	-		ABCV34_RS08005	0.76	-2.9
1,710,551	-		ABCV34_RS08005	0.76	-5.7
1,710,551	-		ABCV34_RS08005	0.76	-2.4
1,710,551	-		ABCV34_RS08005	0.76	-0.1
1,710,551	-		ABCV34_RS08005	0.76	-3.6
1,710,551	-		ABCV34_RS08005	0.76	-3.1
1,710,551	-		ABCV34_RS08005	0.76	-4.3
1,710,551	-		ABCV34_RS08005	0.76	-1.4
1,710,584	+		ABCV34_RS08005	0.78	-2.7
1,710,584	+		ABCV34_RS08005	0.78	-2.9
1,710,584	+		ABCV34_RS08005	0.78	-0.7
1,710,584	+		ABCV34_RS08005	0.78	-2.4
1,710,584	+		ABCV34_RS08005	0.78	-2.5
1,710,585	-		ABCV34_RS08005	0.78	-3.8
1,710,585	-		ABCV34_RS08005	0.78	-2.7
1,710,585	-		ABCV34_RS08005	0.78	-2.4
1,710,662	+		ABCV34_RS08005	0.84	-2.1
1,710,721	+		ABCV34_RS08005	0.88	-2.4
1,710,721	+		ABCV34_RS08005	0.88	-2.9
1,710,853	+				-0.1
1,710,853	+				-0.1
1,710,853	+				-3.0
1,710,853	+				-5.2
1,710,853	+				-0.1
1,710,854	-				-1.9
1,710,893	+				-1.5
1,710,908	+				-2.3
1,710,908	+				-0.1
1,710,911	+				-0.8