Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06400

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
1,391,718	+		ABCV34_RS06395	0.34	-1.4
1,391,730	+		ABCV34_RS06395	0.36	-1.7
1,391,734	+		ABCV34_RS06395	0.36	-2.1
1,391,734	+		ABCV34_RS06395	0.36	-2.1
1,391,734	+		ABCV34_RS06395	0.36	-2.9
1,391,735	-		ABCV34_RS06395	0.36	-2.2
1,391,735	-		ABCV34_RS06395	0.36	-2.0
1,391,735	-		ABCV34_RS06395	0.36	-1.8
1,391,735	-		ABCV34_RS06395	0.36	-0.0
1,391,735	-		ABCV34_RS06395	0.36	-1.0
1,391,735	-		ABCV34_RS06395	0.36	-0.0
1,391,735	-		ABCV34_RS06395	0.36	-2.6
1,391,735	-		ABCV34_RS06395	0.36	-4.3
1,391,866	+		ABCV34_RS06395	0.49	-2.0
1,391,867	-		ABCV34_RS06395	0.49	-2.4
1,391,867	-		ABCV34_RS06395	0.49	-3.4
1,391,868	+		ABCV34_RS06395	0.49	-1.5
1,391,868	+		ABCV34_RS06395	0.49	-2.4
1,391,868	+		ABCV34_RS06395	0.49	-1.6
1,391,868	+		ABCV34_RS06395	0.49	-1.0
1,391,868	+		ABCV34_RS06395	0.49	-3.0
1,391,868	+		ABCV34_RS06395	0.49	-1.9
1,391,868	+		ABCV34_RS06395	0.49	-4.0
1,391,868	+		ABCV34_RS06395	0.49	-2.5
1,391,868	+		ABCV34_RS06395	0.49	-1.9
1,391,868	+		ABCV34_RS06395	0.49	-3.0
1,391,868	+		ABCV34_RS06395	0.49	-3.2
1,391,869	-		ABCV34_RS06395	0.49	-2.3
1,391,869	-		ABCV34_RS06395	0.49	-3.5
1,391,869	-		ABCV34_RS06395	0.49	-3.3
1,391,869	-		ABCV34_RS06395	0.49	-2.6
1,392,180	+		ABCV34_RS06395	0.79	-1.7
1,392,181	-		ABCV34_RS06395	0.79	-3.0
1,392,184	+		ABCV34_RS06395	0.79	-2.9
1,392,184	+		ABCV34_RS06395	0.79	-1.5
1,392,184	+		ABCV34_RS06395	0.79	-0.0
1,392,184	+		ABCV34_RS06395	0.79	-0.0
1,392,184	+		ABCV34_RS06395	0.79	-3.8
1,392,184	+		ABCV34_RS06395	0.79	-3.0
1,392,184	+		ABCV34_RS06395	0.79	-0.0
1,392,184	+		ABCV34_RS06395	0.79	-3.5
1,392,185	-		ABCV34_RS06395	0.79	-1.4
1,392,185	-		ABCV34_RS06395	0.79	-1.6
1,392,185	-		ABCV34_RS06395	0.79	-1.8
1,392,185	-		ABCV34_RS06395	0.79	-2.6
1,392,185	-		ABCV34_RS06395	0.79	-3.6
1,392,185	-		ABCV34_RS06395	0.79	-3.7
1,392,185	-		ABCV34_RS06395	0.79	-2.0
1,392,185	-		ABCV34_RS06395	0.79	-2.8
1,392,185	-		ABCV34_RS06395	0.79	-2.2
1,392,185	-		ABCV34_RS06395	0.79	-1.7
1,392,185	-		ABCV34_RS06395	0.79	-1.5
1,392,185	-		ABCV34_RS06395	0.79	-1.5
1,392,185	-		ABCV34_RS06395	0.79	+1.0
1,392,185	-		ABCV34_RS06395	0.79	-3.6
1,392,185	-		ABCV34_RS06395	0.79	-1.6
1,392,185	-		ABCV34_RS06395	0.79	-2.9
1,392,187	+		ABCV34_RS06395	0.79	-3.8
1,392,187	+		ABCV34_RS06395	0.79	-0.0
1,392,187	+		ABCV34_RS06395	0.79	-3.0
1,392,187	+		ABCV34_RS06395	0.79	-0.0
1,392,187	+		ABCV34_RS06395	0.79	-2.0
1,392,188	-		ABCV34_RS06395	0.79	-2.1
1,392,188	-		ABCV34_RS06395	0.79	-3.4
1,392,188	-		ABCV34_RS06395	0.79	-1.3
1,392,188	-		ABCV34_RS06395	0.79	-1.6
1,392,188	-		ABCV34_RS06395	0.79	-4.6
1,392,188	-		ABCV34_RS06395	0.79	-3.9
1,392,188	-		ABCV34_RS06395	0.79	-2.1
1,392,188	-		ABCV34_RS06395	0.79	-2.5
1,392,188	-		ABCV34_RS06395	0.79	-3.3
1,392,310	+				-2.4
1,392,310	+				-3.0
1,392,310	+				-2.9
1,392,311	-				-4.0
1,392,311	-				-1.9
1,392,311	-				-2.1
1,392,311	-				-1.7
1,392,444	+				-2.5
1,392,444	+				-4.1
1,392,444	+				-1.9
1,392,444	+				-2.5
1,392,445	-				-1.8
1,392,445	-				-0.8
1,392,445	-				-2.8
1,392,445	-				-3.1
1,392,445	-				-0.0
1,392,447	+				-0.0
1,392,448	-				-1.1
1,392,448	-				-0.0
1,392,448	-				-4.0
1,392,448	-				-2.0
1,392,448	-				-2.0
1,392,460	+				-1.9
1,392,460	+				-1.9
1,392,460	+				-3.3
1,392,460	+				-3.7
1,392,460	+				-3.8
1,392,460	+				-3.2
1,392,460	+				-2.1
1,392,460	+				-3.5
1,392,460	+				-2.3
1,392,460	+				-3.3
1,392,460	+				-1.6
1,392,460	+				-3.9
1,392,461	-				-3.2
1,392,461	-				-1.4
1,392,461	-				-1.4
1,392,461	-				-2.1
1,392,461	-				-3.3
1,392,461	-				-2.1
1,392,461	-				-1.1
1,392,461	-				-3.2
1,392,461	-				-1.6
1,392,461	-				-2.4
1,392,461	-				-2.5
1,392,461	-				-0.5
1,392,461	-				-2.3
1,392,461	-				+1.0
1,392,461	-				-2.4
1,392,461	-				-1.0
1,392,490	+				-3.6
1,392,490	+				-3.6
1,392,490	+				-2.6
1,392,490	+				-3.2
1,392,490	+				-1.6
1,392,491	-				-1.9
1,392,491	-				-3.5
1,392,491	-				-0.2
1,392,491	-				-4.0
1,392,491	-				-2.3
1,392,577	+				-2.0
1,392,577	+				-1.8
1,392,577	+				-2.5
1,392,578	-				-1.6
1,392,578	-				-0.0
1,392,578	-				-3.2
1,392,641	-				-2.0
1,392,641	-				-3.6
1,392,713	+				-3.8
1,392,713	+				-1.8
1,392,713	+				-1.9
1,392,713	+				-2.9
1,392,713	+				-0.0
1,392,760	+		ABCV34_RS06400	0.12	-4.7
1,392,760	+		ABCV34_RS06400	0.12	-2.3
1,392,760	+		ABCV34_RS06400	0.12	-0.0
1,392,760	+		ABCV34_RS06400	0.12	-1.6
1,392,761	-		ABCV34_RS06400	0.12	-2.8
1,392,761	-		ABCV34_RS06400	0.12	-0.0
1,392,761	-		ABCV34_RS06400	0.12	-2.8
1,392,761	-		ABCV34_RS06400	0.12	-2.3
1,392,761	-		ABCV34_RS06400	0.12	-0.0
1,392,761	-		ABCV34_RS06400	0.12	-3.7
1,392,764	+		ABCV34_RS06400	0.13	-4.2
1,392,764	+		ABCV34_RS06400	0.13	-0.0
1,392,764	+		ABCV34_RS06400	0.13	-3.2
1,392,765	-		ABCV34_RS06400	0.13	-1.4
1,392,765	-		ABCV34_RS06400	0.13	-1.4
1,392,765	-		ABCV34_RS06400	0.13	-1.7
1,392,765	-		ABCV34_RS06400	0.13	-2.7
1,392,765	-		ABCV34_RS06400	0.13	-2.7
1,392,791	+		ABCV34_RS06400	0.15	-4.1
1,392,791	+		ABCV34_RS06400	0.15	-2.8
1,392,792	-		ABCV34_RS06400	0.15	-4.7
1,392,792	-		ABCV34_RS06400	0.15	-3.1
1,392,792	-		ABCV34_RS06400	0.15	-5.1
1,392,794	+		ABCV34_RS06400	0.15	-3.5
1,392,794	+		ABCV34_RS06400	0.15	-2.0
1,392,795	-		ABCV34_RS06400	0.15	-2.5
1,392,795	-		ABCV34_RS06400	0.15	-2.3
1,392,809	+		ABCV34_RS06400	0.16	-1.1
1,392,809	+		ABCV34_RS06400	0.16	-2.1
1,392,809	+		ABCV34_RS06400	0.16	-1.0
1,392,810	-		ABCV34_RS06400	0.16	-2.9
1,392,810	-		ABCV34_RS06400	0.16	-2.0
1,392,810	-		ABCV34_RS06400	0.16	-2.1
1,392,917	+		ABCV34_RS06400	0.25	-2.5
1,392,917	+		ABCV34_RS06400	0.25	-2.6
1,392,917	+		ABCV34_RS06400	0.25	-2.2
1,392,918	-		ABCV34_RS06400	0.25	-0.0
1,392,918	-		ABCV34_RS06400	0.25	-0.0
1,392,918	-		ABCV34_RS06400	0.25	-2.8
1,392,918	-		ABCV34_RS06400	0.25	-2.2
1,393,019	+		ABCV34_RS06400	0.33	-2.3
1,393,019	+		ABCV34_RS06400	0.33	-2.7
1,393,019	+		ABCV34_RS06400	0.33	-3.5
1,393,019	+		ABCV34_RS06400	0.33	-4.4
1,393,019	+		ABCV34_RS06400	0.33	-2.3
1,393,020	-		ABCV34_RS06400	0.33	-1.7
1,393,020	-		ABCV34_RS06400	0.33	-3.2
1,393,020	-		ABCV34_RS06400	0.33	-2.0
1,393,020	-		ABCV34_RS06400	0.33	-1.6
1,393,020	-		ABCV34_RS06400	0.33	-2.0
1,393,020	-		ABCV34_RS06400	0.33	-3.3
1,393,020	-		ABCV34_RS06400	0.33	-2.4
1,393,020	-		ABCV34_RS06400	0.33	-2.4
1,393,020	-		ABCV34_RS06400	0.33	-1.0
1,393,034	+		ABCV34_RS06400	0.34	-0.0
1,393,035	-		ABCV34_RS06400	0.34	-0.9
1,393,065	-		ABCV34_RS06400	0.36	-2.2
1,393,457	+		ABCV34_RS06400	0.67	-1.7
1,393,608	+		ABCV34_RS06400	0.79	-2.7
1,393,609	-		ABCV34_RS06400	0.79	-0.0
1,393,609	-		ABCV34_RS06400	0.79	-2.3
1,393,609	-		ABCV34_RS06400	0.79	-2.5
1,393,844	+				-2.4
1,393,844	+				-0.0
1,393,844	+				-2.7
1,393,844	+				-2.0
1,393,844	+				-2.5
1,393,844	+				-3.4
1,393,971	+				-2.8
1,393,971	+				-1.7
1,393,972	-				+1.0
1,394,007	+				-2.1
1,394,007	+				-2.7
1,394,008	-				-2.5
1,394,061	+		ABCV34_RS06405	0.14	-2.8
1,394,061	+		ABCV34_RS06405	0.14	-4.0
1,394,061	+		ABCV34_RS06405	0.14	-0.0
1,394,062	-		ABCV34_RS06405	0.14	-1.4
1,394,544	+		ABCV34_RS06405	0.52	-1.5
1,394,544	+		ABCV34_RS06405	0.52	-0.0
1,394,544	+		ABCV34_RS06405	0.52	-1.8
1,394,545	-		ABCV34_RS06405	0.52	-1.7
1,394,571	+		ABCV34_RS06405	0.55	-3.5
1,394,571	+		ABCV34_RS06405	0.55	-2.8
1,394,571	+		ABCV34_RS06405	0.55	-1.2
1,394,571	+		ABCV34_RS06405	0.55	-3.0
1,394,571	+		ABCV34_RS06405	0.55	+2.3
1,394,571	+		ABCV34_RS06405	0.55	+1.0
1,394,572	-		ABCV34_RS06405	0.55	-3.5
1,394,572	-		ABCV34_RS06405	0.55	+1.6
1,394,572	-		ABCV34_RS06405	0.55	-1.9
1,394,640	+		ABCV34_RS06405	0.60	-0.0
1,394,640	+		ABCV34_RS06405	0.60	-2.4
1,394,640	+		ABCV34_RS06405	0.60	-1.5
1,394,640	+		ABCV34_RS06405	0.60	-2.2
1,394,640	+		ABCV34_RS06405	0.60	-0.9
1,394,640	+		ABCV34_RS06405	0.60	-2.0
1,394,640	+		ABCV34_RS06405	0.60	-1.6
1,394,640	+		ABCV34_RS06405	0.60	+1.0
1,394,641	-		ABCV34_RS06405	0.60	-1.7
1,394,641	-		ABCV34_RS06405	0.60	-3.4
1,394,641	-		ABCV34_RS06405	0.60	-2.0
1,394,641	-		ABCV34_RS06405	0.60	-1.8
1,394,641	-		ABCV34_RS06405	0.60	-3.3
1,394,641	-		ABCV34_RS06405	0.60	-2.4
1,394,641	-		ABCV34_RS06405	0.60	-1.9
1,394,641	-		ABCV34_RS06405	0.60	-4.4
1,394,775	+		ABCV34_RS06405	0.71	-2.6
1,394,775	+		ABCV34_RS06405	0.71	-2.6
1,394,775	+		ABCV34_RS06405	0.71	-2.8
1,394,776	-		ABCV34_RS06405	0.71	-1.9