Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04780

Experiment: Anaerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS04775 and ABCV34_RS04780 are separated by 177 nucleotidesABCV34_RS04780 and ABCV34_RS04785 are separated by 139 nucleotidesABCV34_RS04785 and ABCV34_RS04790 are separated by 16 nucleotidesABCV34_RS04790 and ABCV34_RS04795 overlap by 4 nucleotides ABCV34_RS04775: ABCV34_RS04775 - EAL domain-containing protein, at 1,030,144 to 1,032,963 _RS04775 ABCV34_RS04780: ABCV34_RS04780 - phosphoenolpyruvate--protein phosphotransferase, at 1,033,141 to 1,034,796 _RS04780 ABCV34_RS04785: ABCV34_RS04785 - HPr family phosphocarrier protein, at 1,034,936 to 1,035,205 _RS04785 ABCV34_RS04790: ABCV34_RS04790 - PTS sugar transporter subunit IIA, at 1,035,222 to 1,035,635 _RS04790 ABCV34_RS04795: ABCV34_RS04795 - glutathione synthase, at 1,035,632 to 1,036,591 _RS04795 Position (kb) 1033 1034 1035Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1032.289 kb on - strand, within ABCV34_RS04775at 1032.289 kb on - strand, within ABCV34_RS04775at 1032.289 kb on - strand, within ABCV34_RS04775at 1032.314 kb on + strand, within ABCV34_RS04775at 1032.314 kb on + strand, within ABCV34_RS04775at 1032.314 kb on + strand, within ABCV34_RS04775at 1032.315 kb on - strand, within ABCV34_RS04775at 1032.387 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.434 kb on + strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.435 kb on - strand, within ABCV34_RS04775at 1032.731 kb on + strandat 1032.731 kb on + strandat 1032.731 kb on + strandat 1032.731 kb on + strandat 1032.731 kb on + strandat 1032.886 kb on + strandat 1032.886 kb on + strandat 1032.957 kb on + strandat 1032.957 kb on + strandat 1033.077 kb on + strandat 1033.077 kb on + strandat 1033.077 kb on + strandat 1033.077 kb on + strandat 1033.078 kb on - strandat 1033.078 kb on - strandat 1033.078 kb on - strandat 1033.078 kb on - strandat 1033.078 kb on - strandat 1033.078 kb on - strandat 1033.080 kb on + strandat 1033.081 kb on - strandat 1033.081 kb on - strandat 1033.167 kb on + strandat 1033.380 kb on + strand, within ABCV34_RS04780at 1033.380 kb on + strand, within ABCV34_RS04780at 1033.380 kb on + strand, within ABCV34_RS04780at 1033.381 kb on - strand, within ABCV34_RS04780at 1033.421 kb on + strand, within ABCV34_RS04780at 1033.421 kb on + strand, within ABCV34_RS04780at 1033.421 kb on + strand, within ABCV34_RS04780at 1033.421 kb on + strand, within ABCV34_RS04780at 1033.422 kb on - strand, within ABCV34_RS04780at 1033.422 kb on - strand, within ABCV34_RS04780at 1033.466 kb on + strand, within ABCV34_RS04780at 1033.466 kb on + strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.467 kb on - strand, within ABCV34_RS04780at 1033.582 kb on - strand, within ABCV34_RS04780at 1033.582 kb on - strand, within ABCV34_RS04780at 1033.729 kb on - strand, within ABCV34_RS04780at 1033.729 kb on - strand, within ABCV34_RS04780at 1033.889 kb on + strand, within ABCV34_RS04780at 1033.890 kb on - strand, within ABCV34_RS04780at 1033.890 kb on - strand, within ABCV34_RS04780at 1033.898 kb on + strand, within ABCV34_RS04780at 1033.898 kb on + strand, within ABCV34_RS04780at 1033.898 kb on + strand, within ABCV34_RS04780at 1033.898 kb on + strand, within ABCV34_RS04780at 1033.898 kb on + strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1033.899 kb on - strand, within ABCV34_RS04780at 1034.017 kb on - strand, within ABCV34_RS04780at 1034.053 kb on - strand, within ABCV34_RS04780at 1034.053 kb on - strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.123 kb on + strand, within ABCV34_RS04780at 1034.124 kb on - strand, within ABCV34_RS04780at 1034.124 kb on - strand, within ABCV34_RS04780at 1034.124 kb on - strand, within ABCV34_RS04780at 1034.352 kb on + strand, within ABCV34_RS04780at 1034.352 kb on + strand, within ABCV34_RS04780at 1034.352 kb on + strand, within ABCV34_RS04780at 1034.353 kb on - strand, within ABCV34_RS04780at 1034.486 kb on + strand, within ABCV34_RS04780at 1034.486 kb on + strand, within ABCV34_RS04780at 1034.486 kb on + strand, within ABCV34_RS04780at 1034.486 kb on + strand, within ABCV34_RS04780at 1034.487 kb on - strand, within ABCV34_RS04780at 1034.487 kb on - strand, within ABCV34_RS04780at 1034.487 kb on - strand, within ABCV34_RS04780at 1034.558 kb on + strand, within ABCV34_RS04780at 1034.558 kb on + strand, within ABCV34_RS04780at 1034.558 kb on + strand, within ABCV34_RS04780at 1034.559 kb on - strand, within ABCV34_RS04780at 1034.559 kb on - strand, within ABCV34_RS04780at 1034.559 kb on - strand, within ABCV34_RS04780at 1034.559 kb on - strand, within ABCV34_RS04780at 1034.559 kb on - strand, within ABCV34_RS04780at 1034.680 kb on + strandat 1034.681 kb on - strandat 1034.681 kb on - strandat 1034.819 kb on + strandat 1034.827 kb on + strandat 1034.843 kb on + strandat 1034.843 kb on + strandat 1034.843 kb on + strandat 1034.843 kb on + strandat 1034.844 kb on - strandat 1034.844 kb on - strandat 1034.844 kb on - strandat 1034.956 kb on + strandat 1034.956 kb on + strandat 1034.957 kb on - strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.223 kb on + strandat 1035.224 kb on - strandat 1035.224 kb on - strandat 1035.224 kb on - strandat 1035.224 kb on - strandat 1035.370 kb on + strand, within ABCV34_RS04790at 1035.370 kb on + strand, within ABCV34_RS04790at 1035.370 kb on + strand, within ABCV34_RS04790at 1035.370 kb on + strand, within ABCV34_RS04790at 1035.370 kb on + strand, within ABCV34_RS04790at 1035.371 kb on - strand, within ABCV34_RS04790at 1035.371 kb on - strand, within ABCV34_RS04790at 1035.371 kb on - strand, within ABCV34_RS04790at 1035.371 kb on - strand, within ABCV34_RS04790at 1035.430 kb on + strand, within ABCV34_RS04790at 1035.430 kb on + strand, within ABCV34_RS04790at 1035.430 kb on + strand, within ABCV34_RS04790at 1035.430 kb on + strand, within ABCV34_RS04790at 1035.430 kb on + strand, within ABCV34_RS04790at 1035.431 kb on - strand, within ABCV34_RS04790at 1035.431 kb on - strand, within ABCV34_RS04790at 1035.629 kb on + strandat 1035.629 kb on + strandat 1035.629 kb on + strandat 1035.629 kb on + strandat 1035.630 kb on - strandat 1035.747 kb on + strand, within ABCV34_RS04795at 1035.747 kb on + strand, within ABCV34_RS04795at 1035.747 kb on + strand, within ABCV34_RS04795at 1035.747 kb on + strand, within ABCV34_RS04795at 1035.747 kb on + strand, within ABCV34_RS04795at 1035.747 kb on + strand, within ABCV34_RS04795at 1035.747 kb on + strand, within ABCV34_RS04795at 1035.748 kb on - strand, within ABCV34_RS04795at 1035.748 kb on - strand, within ABCV34_RS04795at 1035.748 kb on - strand, within ABCV34_RS04795at 1035.748 kb on - strand, within ABCV34_RS04795

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH5.5
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1,032,289 - ABCV34_RS04775 0.76 -1.6
1,032,289 - ABCV34_RS04775 0.76 -3.7
1,032,289 - ABCV34_RS04775 0.76 -2.4
1,032,314 + ABCV34_RS04775 0.77 -2.2
1,032,314 + ABCV34_RS04775 0.77 -3.5
1,032,314 + ABCV34_RS04775 0.77 -3.6
1,032,315 - ABCV34_RS04775 0.77 -1.7
1,032,387 + ABCV34_RS04775 0.80 -2.6
1,032,434 + ABCV34_RS04775 0.81 -0.7
1,032,434 + ABCV34_RS04775 0.81 -0.8
1,032,434 + ABCV34_RS04775 0.81 -0.0
1,032,434 + ABCV34_RS04775 0.81 -4.0
1,032,434 + ABCV34_RS04775 0.81 -2.4
1,032,434 + ABCV34_RS04775 0.81 -3.8
1,032,434 + ABCV34_RS04775 0.81 -2.3
1,032,434 + ABCV34_RS04775 0.81 -2.6
1,032,434 + ABCV34_RS04775 0.81 -3.1
1,032,435 - ABCV34_RS04775 0.81 -3.8
1,032,435 - ABCV34_RS04775 0.81 -3.0
1,032,435 - ABCV34_RS04775 0.81 -2.3
1,032,435 - ABCV34_RS04775 0.81 -2.9
1,032,435 - ABCV34_RS04775 0.81 -3.0
1,032,435 - ABCV34_RS04775 0.81 -3.7
1,032,435 - ABCV34_RS04775 0.81 -2.0
1,032,435 - ABCV34_RS04775 0.81 -1.8
1,032,435 - ABCV34_RS04775 0.81 -1.2
1,032,435 - ABCV34_RS04775 0.81 -1.7
1,032,435 - ABCV34_RS04775 0.81 -3.0
1,032,435 - ABCV34_RS04775 0.81 -3.0
1,032,435 - ABCV34_RS04775 0.81 -2.5
1,032,435 - ABCV34_RS04775 0.81 -3.8
1,032,435 - ABCV34_RS04775 0.81 -2.1
1,032,731 + -3.2
1,032,731 + -1.6
1,032,731 + -2.5
1,032,731 + -3.4
1,032,731 + -2.8
1,032,886 + -1.9
1,032,886 + -3.1
1,032,957 + -1.7
1,032,957 + -2.2
1,033,077 + -1.3
1,033,077 + -1.6
1,033,077 + -2.6
1,033,077 + -1.8
1,033,078 - -1.2
1,033,078 - -3.2
1,033,078 - -2.6
1,033,078 - -1.6
1,033,078 - -1.5
1,033,078 - -2.3
1,033,080 + -3.2
1,033,081 - -2.1
1,033,081 - -3.1
1,033,167 + -2.0
1,033,380 + ABCV34_RS04780 0.14 +0.5
1,033,380 + ABCV34_RS04780 0.14 +0.1
1,033,380 + ABCV34_RS04780 0.14 -0.2
1,033,381 - ABCV34_RS04780 0.14 -1.0
1,033,421 + ABCV34_RS04780 0.17 -0.3
1,033,421 + ABCV34_RS04780 0.17 +0.4
1,033,421 + ABCV34_RS04780 0.17 -0.7
1,033,421 + ABCV34_RS04780 0.17 +0.2
1,033,422 - ABCV34_RS04780 0.17 +1.4
1,033,422 - ABCV34_RS04780 0.17 -0.2
1,033,466 + ABCV34_RS04780 0.20 -0.0
1,033,466 + ABCV34_RS04780 0.20 -0.9
1,033,467 - ABCV34_RS04780 0.20 -0.2
1,033,467 - ABCV34_RS04780 0.20 +0.5
1,033,467 - ABCV34_RS04780 0.20 +0.2
1,033,467 - ABCV34_RS04780 0.20 +0.8
1,033,467 - ABCV34_RS04780 0.20 +0.1
1,033,467 - ABCV34_RS04780 0.20 -0.4
1,033,467 - ABCV34_RS04780 0.20 +0.2
1,033,582 - ABCV34_RS04780 0.27 +0.3
1,033,582 - ABCV34_RS04780 0.27 -0.0
1,033,729 - ABCV34_RS04780 0.36 +0.6
1,033,729 - ABCV34_RS04780 0.36 +0.4
1,033,889 + ABCV34_RS04780 0.45 +0.1
1,033,890 - ABCV34_RS04780 0.45 -0.0
1,033,890 - ABCV34_RS04780 0.45 +1.3
1,033,898 + ABCV34_RS04780 0.46 -0.3
1,033,898 + ABCV34_RS04780 0.46 -0.6
1,033,898 + ABCV34_RS04780 0.46 +0.1
1,033,898 + ABCV34_RS04780 0.46 -1.0
1,033,898 + ABCV34_RS04780 0.46 -0.0
1,033,899 - ABCV34_RS04780 0.46 -0.3
1,033,899 - ABCV34_RS04780 0.46 +0.5
1,033,899 - ABCV34_RS04780 0.46 -0.5
1,033,899 - ABCV34_RS04780 0.46 -1.0
1,033,899 - ABCV34_RS04780 0.46 +0.6
1,033,899 - ABCV34_RS04780 0.46 -0.0
1,033,899 - ABCV34_RS04780 0.46 -0.2
1,033,899 - ABCV34_RS04780 0.46 +0.4
1,033,899 - ABCV34_RS04780 0.46 -0.2
1,033,899 - ABCV34_RS04780 0.46 +0.2
1,034,017 - ABCV34_RS04780 0.53 +0.1
1,034,053 - ABCV34_RS04780 0.55 -0.9
1,034,053 - ABCV34_RS04780 0.55 +0.6
1,034,123 + ABCV34_RS04780 0.59 +0.3
1,034,123 + ABCV34_RS04780 0.59 +0.7
1,034,123 + ABCV34_RS04780 0.59 -0.2
1,034,123 + ABCV34_RS04780 0.59 +0.4
1,034,123 + ABCV34_RS04780 0.59 -0.4
1,034,123 + ABCV34_RS04780 0.59 +0.7
1,034,123 + ABCV34_RS04780 0.59 +0.1
1,034,124 - ABCV34_RS04780 0.59 -0.3
1,034,124 - ABCV34_RS04780 0.59 +0.3
1,034,124 - ABCV34_RS04780 0.59 +0.2
1,034,352 + ABCV34_RS04780 0.73 -0.7
1,034,352 + ABCV34_RS04780 0.73 -0.5
1,034,352 + ABCV34_RS04780 0.73 -0.2
1,034,353 - ABCV34_RS04780 0.73 -0.7
1,034,486 + ABCV34_RS04780 0.81 -0.0
1,034,486 + ABCV34_RS04780 0.81 +0.2
1,034,486 + ABCV34_RS04780 0.81 +0.9
1,034,486 + ABCV34_RS04780 0.81 -0.7
1,034,487 - ABCV34_RS04780 0.81 -0.1
1,034,487 - ABCV34_RS04780 0.81 -0.3
1,034,487 - ABCV34_RS04780 0.81 +0.5
1,034,558 + ABCV34_RS04780 0.86 -0.3
1,034,558 + ABCV34_RS04780 0.86 -0.3
1,034,558 + ABCV34_RS04780 0.86 +1.6
1,034,559 - ABCV34_RS04780 0.86 -0.4
1,034,559 - ABCV34_RS04780 0.86 +0.1
1,034,559 - ABCV34_RS04780 0.86 +0.9
1,034,559 - ABCV34_RS04780 0.86 +0.0
1,034,559 - ABCV34_RS04780 0.86 +0.4
1,034,680 + -0.2
1,034,681 - -0.7
1,034,681 - -0.3
1,034,819 + +1.6
1,034,827 + -0.9
1,034,843 + +0.0
1,034,843 + -0.3
1,034,843 + -0.2
1,034,843 + +0.0
1,034,844 - -0.0
1,034,844 - +0.6
1,034,844 - -0.0
1,034,956 + -0.0
1,034,956 + -0.8
1,034,957 - +0.1
1,035,223 + -0.7
1,035,223 + -1.4
1,035,223 + -0.5
1,035,223 + -0.4
1,035,223 + -1.3
1,035,223 + -1.9
1,035,223 + -1.9
1,035,223 + -0.7
1,035,223 + -0.5
1,035,223 + -2.3
1,035,223 + -1.3
1,035,223 + -1.5
1,035,223 + -1.9
1,035,224 - -2.5
1,035,224 - -0.6
1,035,224 - -3.0
1,035,224 - -1.9
1,035,370 + ABCV34_RS04790 0.36 -0.9
1,035,370 + ABCV34_RS04790 0.36 -0.0
1,035,370 + ABCV34_RS04790 0.36 -1.3
1,035,370 + ABCV34_RS04790 0.36 -1.4
1,035,370 + ABCV34_RS04790 0.36 -2.0
1,035,371 - ABCV34_RS04790 0.36 -2.0
1,035,371 - ABCV34_RS04790 0.36 -2.3
1,035,371 - ABCV34_RS04790 0.36 -3.3
1,035,371 - ABCV34_RS04790 0.36 -1.9
1,035,430 + ABCV34_RS04790 0.50 -0.1
1,035,430 + ABCV34_RS04790 0.50 +0.3
1,035,430 + ABCV34_RS04790 0.50 +0.4
1,035,430 + ABCV34_RS04790 0.50 +0.1
1,035,430 + ABCV34_RS04790 0.50 -0.0
1,035,431 - ABCV34_RS04790 0.50 -3.0
1,035,431 - ABCV34_RS04790 0.50 -1.8
1,035,629 + -0.2
1,035,629 + +0.8
1,035,629 + +0.7
1,035,629 + +0.1
1,035,630 - +0.5
1,035,747 + ABCV34_RS04795 0.12 -3.8
1,035,747 + ABCV34_RS04795 0.12 -1.6
1,035,747 + ABCV34_RS04795 0.12 -1.0
1,035,747 + ABCV34_RS04795 0.12 -0.6
1,035,747 + ABCV34_RS04795 0.12 -1.2
1,035,747 + ABCV34_RS04795 0.12 -2.3
1,035,747 + ABCV34_RS04795 0.12 -2.0
1,035,748 - ABCV34_RS04795 0.12 -0.0
1,035,748 - ABCV34_RS04795 0.12 -2.8
1,035,748 - ABCV34_RS04795 0.12 -3.2
1,035,748 - ABCV34_RS04795 0.12 -2.6

Or see this region's nucleotide sequence