Experiment: Anaerobic, pH5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04340 and ABCV34_RS04345 are separated by 18 nucleotides ABCV34_RS04345 and ABCV34_RS04350 overlap by 70 nucleotides ABCV34_RS04350 and ABCV34_RS04355 overlap by 14 nucleotides ABCV34_RS04355 and ABCV34_RS04360 are separated by 11 nucleotides
ABCV34_RS04340: ABCV34_RS04340 - homoserine kinase, at 947,341 to 948,315
_RS04340
ABCV34_RS04345: ABCV34_RS04345 - BPSS1780 family membrane protein, at 948,334 to 949,149
_RS04345
ABCV34_RS04350: ABCV34_RS04350 - DUF192 domain-containing protein, at 949,080 to 949,484
_RS04350
ABCV34_RS04355: ABCV34_RS04355 - type II secretion system F family protein, at 949,471 to 950,334
_RS04355
ABCV34_RS04360: ABCV34_RS04360 - type II secretion system F family protein, at 950,346 to 951,194
_RS04360
Position (kb) 949
950 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 948.107 kb on - strand, within ABCV34_RS04340 at 948.208 kb on + strand, within ABCV34_RS04340 at 948.308 kb on + strand at 948.655 kb on + strand, within ABCV34_RS04345 at 948.655 kb on + strand, within ABCV34_RS04345 at 948.655 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.750 kb on + strand, within ABCV34_RS04345 at 948.751 kb on - strand, within ABCV34_RS04345 at 948.802 kb on + strand, within ABCV34_RS04345 at 948.802 kb on + strand, within ABCV34_RS04345 at 948.803 kb on - strand, within ABCV34_RS04345 at 948.803 kb on - strand, within ABCV34_RS04345 at 948.883 kb on + strand, within ABCV34_RS04345 at 948.883 kb on + strand, within ABCV34_RS04345 at 948.929 kb on - strand, within ABCV34_RS04345 at 949.061 kb on - strand, within ABCV34_RS04345 at 949.061 kb on - strand, within ABCV34_RS04345 at 949.081 kb on + strand at 949.082 kb on - strand at 949.147 kb on + strand at 949.248 kb on + strand, within ABCV34_RS04350 at 949.458 kb on + strand at 949.458 kb on + strand at 949.458 kb on + strand at 949.459 kb on - strand at 949.459 kb on - strand at 949.459 kb on - strand at 949.488 kb on + strand at 949.489 kb on - strand at 949.489 kb on - strand at 949.489 kb on - strand at 950.431 kb on + strand, within ABCV34_RS04360 at 950.431 kb on + strand, within ABCV34_RS04360 at 950.432 kb on - strand, within ABCV34_RS04360
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, pH5.5 remove 948,107 - ABCV34_RS04340 0.79 -1.0 948,208 + ABCV34_RS04340 0.89 -3.2 948,308 + -3.2 948,655 + ABCV34_RS04345 0.39 -2.0 948,655 + ABCV34_RS04345 0.39 -1.6 948,655 + ABCV34_RS04345 0.39 -1.0 948,748 + ABCV34_RS04345 0.51 -2.8 948,748 + ABCV34_RS04345 0.51 -1.0 948,748 + ABCV34_RS04345 0.51 -3.8 948,748 + ABCV34_RS04345 0.51 -3.0 948,749 - ABCV34_RS04345 0.51 -2.0 948,749 - ABCV34_RS04345 0.51 -2.3 948,749 - ABCV34_RS04345 0.51 +1.0 948,749 - ABCV34_RS04345 0.51 -1.0 948,750 + ABCV34_RS04345 0.51 -2.0 948,751 - ABCV34_RS04345 0.51 -2.8 948,802 + ABCV34_RS04345 0.57 -1.6 948,802 + ABCV34_RS04345 0.57 -1.3 948,803 - ABCV34_RS04345 0.57 -2.6 948,803 - ABCV34_RS04345 0.57 -2.0 948,883 + ABCV34_RS04345 0.67 -2.6 948,883 + ABCV34_RS04345 0.67 -2.0 948,929 - ABCV34_RS04345 0.73 -1.6 949,061 - ABCV34_RS04345 0.89 -2.8 949,061 - ABCV34_RS04345 0.89 -2.2 949,081 + -1.6 949,082 - -2.3 949,147 + -3.3 949,248 + ABCV34_RS04350 0.41 -1.8 949,458 + -1.7 949,458 + +0.6 949,458 + -0.8 949,459 - -3.2 949,459 - -1.2 949,459 - -1.3 949,488 + -2.4 949,489 - -4.7 949,489 - -3.3 949,489 - -1.4 950,431 + ABCV34_RS04360 0.10 -3.0 950,431 + ABCV34_RS04360 0.10 -4.4 950,432 - ABCV34_RS04360 0.10 -2.2
Or see this region's nucleotide sequence