Experiment: Anaerobic, pH5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02830 and ABCV34_RS02835 are separated by 112 nucleotides ABCV34_RS02835 and ABCV34_RS02840 are separated by 9 nucleotides ABCV34_RS02840 and ABCV34_RS02845 overlap by 4 nucleotides ABCV34_RS02845 and ABCV34_RS02850 overlap by 8 nucleotides
ABCV34_RS02830: ABCV34_RS02830 - ABC transporter substrate-binding protein, at 630,493 to 631,668
_RS02830
ABCV34_RS02835: ABCV34_RS02835 - branched-chain amino acid ABC transporter permease, at 631,781 to 632,641
_RS02835
ABCV34_RS02840: ABCV34_RS02840 - branched-chain amino acid ABC transporter permease, at 632,651 to 633,691
_RS02840
ABCV34_RS02845: ABCV34_RS02845 - ABC transporter ATP-binding protein, at 633,688 to 634,437
_RS02845
ABCV34_RS02850: ABCV34_RS02850 - ABC transporter ATP-binding protein, at 634,430 to 635,095
_RS02850
Position (kb) 632
633
634 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 631.766 kb on + strand at 631.766 kb on + strand at 631.766 kb on + strand at 631.767 kb on - strand at 631.789 kb on + strand at 631.789 kb on + strand at 631.790 kb on - strand at 631.791 kb on + strand at 631.791 kb on + strand at 631.791 kb on + strand at 631.791 kb on + strand at 631.791 kb on + strand at 631.791 kb on + strand at 631.792 kb on - strand at 631.792 kb on - strand at 631.792 kb on - strand at 631.792 kb on - strand at 631.792 kb on - strand at 631.792 kb on - strand at 631.792 kb on - strand at 632.033 kb on + strand, within ABCV34_RS02835 at 632.033 kb on + strand, within ABCV34_RS02835 at 632.033 kb on + strand, within ABCV34_RS02835 at 632.033 kb on + strand, within ABCV34_RS02835 at 632.033 kb on + strand, within ABCV34_RS02835 at 632.033 kb on + strand, within ABCV34_RS02835 at 632.106 kb on - strand, within ABCV34_RS02835 at 632.106 kb on - strand, within ABCV34_RS02835 at 632.438 kb on + strand, within ABCV34_RS02835 at 632.438 kb on + strand, within ABCV34_RS02835 at 632.438 kb on + strand, within ABCV34_RS02835 at 632.438 kb on + strand, within ABCV34_RS02835 at 632.438 kb on + strand, within ABCV34_RS02835 at 632.439 kb on - strand, within ABCV34_RS02835 at 632.439 kb on - strand, within ABCV34_RS02835 at 632.439 kb on - strand, within ABCV34_RS02835 at 632.439 kb on - strand, within ABCV34_RS02835 at 632.439 kb on - strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.447 kb on + strand, within ABCV34_RS02835 at 632.448 kb on - strand, within ABCV34_RS02835 at 632.448 kb on - strand, within ABCV34_RS02835 at 632.448 kb on - strand, within ABCV34_RS02835 at 632.448 kb on - strand, within ABCV34_RS02835 at 632.448 kb on - strand, within ABCV34_RS02835 at 632.448 kb on - strand, within ABCV34_RS02835 at 632.486 kb on - strand, within ABCV34_RS02835 at 632.501 kb on + strand, within ABCV34_RS02835 at 632.501 kb on + strand, within ABCV34_RS02835 at 632.502 kb on - strand, within ABCV34_RS02835 at 632.502 kb on - strand, within ABCV34_RS02835 at 632.502 kb on - strand, within ABCV34_RS02835 at 632.543 kb on + strand, within ABCV34_RS02835 at 632.543 kb on + strand, within ABCV34_RS02835 at 632.543 kb on + strand, within ABCV34_RS02835 at 632.543 kb on + strand, within ABCV34_RS02835 at 632.543 kb on + strand, within ABCV34_RS02835 at 632.543 kb on + strand, within ABCV34_RS02835 at 632.544 kb on - strand, within ABCV34_RS02835 at 632.544 kb on - strand, within ABCV34_RS02835 at 632.544 kb on - strand, within ABCV34_RS02835 at 632.544 kb on - strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.546 kb on + strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.547 kb on - strand, within ABCV34_RS02835 at 632.550 kb on + strand, within ABCV34_RS02835 at 632.550 kb on + strand, within ABCV34_RS02835 at 632.550 kb on + strand, within ABCV34_RS02835 at 632.576 kb on + strand at 632.576 kb on + strand at 632.576 kb on + strand at 632.576 kb on + strand at 632.576 kb on + strand at 632.577 kb on - strand at 632.577 kb on - strand at 632.603 kb on + strand at 632.603 kb on + strand at 632.639 kb on + strand at 632.639 kb on + strand at 632.639 kb on + strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.640 kb on - strand at 632.747 kb on + strand at 632.747 kb on + strand at 632.747 kb on + strand at 632.747 kb on + strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.777 kb on + strand, within ABCV34_RS02840 at 632.777 kb on + strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.799 kb on - strand, within ABCV34_RS02840 at 632.799 kb on - strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.916 kb on - strand, within ABCV34_RS02840 at 632.916 kb on - strand, within ABCV34_RS02840 at 632.918 kb on - strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.200 kb on + strand, within ABCV34_RS02840 at 633.200 kb on + strand, within ABCV34_RS02840 at 633.200 kb on + strand, within ABCV34_RS02840 at 633.201 kb on - strand, within ABCV34_RS02840 at 633.201 kb on - strand, within ABCV34_RS02840 at 633.251 kb on + strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.347 kb on + strand, within ABCV34_RS02840 at 633.347 kb on + strand, within ABCV34_RS02840 at 633.347 kb on + strand, within ABCV34_RS02840 at 633.348 kb on - strand, within ABCV34_RS02840 at 633.348 kb on - strand, within ABCV34_RS02840 at 633.365 kb on + strand, within ABCV34_RS02840 at 633.488 kb on + strand, within ABCV34_RS02840 at 633.488 kb on + strand, within ABCV34_RS02840 at 633.488 kb on + strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.530 kb on + strand, within ABCV34_RS02840 at 633.530 kb on + strand, within ABCV34_RS02840 at 633.531 kb on - strand, within ABCV34_RS02840 at 633.531 kb on - strand, within ABCV34_RS02840 at 633.558 kb on - strand, within ABCV34_RS02840 at 633.936 kb on + strand, within ABCV34_RS02845 at 633.936 kb on + strand, within ABCV34_RS02845 at 633.936 kb on + strand, within ABCV34_RS02845 at 633.936 kb on + strand, within ABCV34_RS02845 at 634.135 kb on + strand, within ABCV34_RS02845 at 634.332 kb on + strand, within ABCV34_RS02845 at 634.333 kb on - strand, within ABCV34_RS02845 at 634.333 kb on - strand, within ABCV34_RS02845 at 634.414 kb on + strand at 634.414 kb on + strand at 634.414 kb on + strand at 634.415 kb on - strand at 634.573 kb on + strand, within ABCV34_RS02850 at 634.574 kb on - strand, within ABCV34_RS02850 at 634.574 kb on - strand, within ABCV34_RS02850 at 634.574 kb on - strand, within ABCV34_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, pH5.5 remove 631,766 + -0.0 631,766 + -2.2 631,766 + -0.0 631,767 - -2.2 631,789 + -4.3 631,789 + -3.0 631,790 - -4.8 631,791 + -4.7 631,791 + -3.7 631,791 + -4.4 631,791 + -2.0 631,791 + -3.4 631,791 + +1.6 631,792 - -4.3 631,792 - -3.7 631,792 - +1.0 631,792 - -2.5 631,792 - -2.0 631,792 - -2.4 631,792 - -3.5 632,033 + ABCV34_RS02835 0.29 -4.3 632,033 + ABCV34_RS02835 0.29 -0.0 632,033 + ABCV34_RS02835 0.29 -3.2 632,033 + ABCV34_RS02835 0.29 -3.6 632,033 + ABCV34_RS02835 0.29 -3.3 632,033 + ABCV34_RS02835 0.29 -2.3 632,106 - ABCV34_RS02835 0.38 -4.5 632,106 - ABCV34_RS02835 0.38 -3.6 632,438 + ABCV34_RS02835 0.76 -0.0 632,438 + ABCV34_RS02835 0.76 -5.8 632,438 + ABCV34_RS02835 0.76 -2.2 632,438 + ABCV34_RS02835 0.76 -2.3 632,438 + ABCV34_RS02835 0.76 -3.6 632,439 - ABCV34_RS02835 0.76 -2.6 632,439 - ABCV34_RS02835 0.76 -2.6 632,439 - ABCV34_RS02835 0.76 -3.0 632,439 - ABCV34_RS02835 0.76 -4.6 632,439 - ABCV34_RS02835 0.76 -2.1 632,447 + ABCV34_RS02835 0.77 -3.1 632,447 + ABCV34_RS02835 0.77 -3.7 632,447 + ABCV34_RS02835 0.77 -3.5 632,447 + ABCV34_RS02835 0.77 -4.1 632,447 + ABCV34_RS02835 0.77 -5.0 632,447 + ABCV34_RS02835 0.77 -3.5 632,447 + ABCV34_RS02835 0.77 -3.6 632,447 + ABCV34_RS02835 0.77 -5.1 632,448 - ABCV34_RS02835 0.77 +1.6 632,448 - ABCV34_RS02835 0.77 -1.6 632,448 - ABCV34_RS02835 0.77 -2.1 632,448 - ABCV34_RS02835 0.77 -3.5 632,448 - ABCV34_RS02835 0.77 -3.6 632,448 - ABCV34_RS02835 0.77 -3.3 632,486 - ABCV34_RS02835 0.82 -3.8 632,501 + ABCV34_RS02835 0.84 -2.4 632,501 + ABCV34_RS02835 0.84 -2.7 632,502 - ABCV34_RS02835 0.84 -3.0 632,502 - ABCV34_RS02835 0.84 -4.5 632,502 - ABCV34_RS02835 0.84 -3.3 632,543 + ABCV34_RS02835 0.89 -2.3 632,543 + ABCV34_RS02835 0.89 -2.9 632,543 + ABCV34_RS02835 0.89 -3.9 632,543 + ABCV34_RS02835 0.89 -0.0 632,543 + ABCV34_RS02835 0.89 -0.0 632,543 + ABCV34_RS02835 0.89 -5.6 632,544 - ABCV34_RS02835 0.89 -2.6 632,544 - ABCV34_RS02835 0.89 -5.0 632,544 - ABCV34_RS02835 0.89 -3.2 632,544 - ABCV34_RS02835 0.89 -3.3 632,546 + ABCV34_RS02835 0.89 -3.1 632,546 + ABCV34_RS02835 0.89 -2.9 632,546 + ABCV34_RS02835 0.89 -4.3 632,546 + ABCV34_RS02835 0.89 -2.8 632,546 + ABCV34_RS02835 0.89 -2.8 632,546 + ABCV34_RS02835 0.89 -5.1 632,546 + ABCV34_RS02835 0.89 -2.6 632,546 + ABCV34_RS02835 0.89 -3.5 632,546 + ABCV34_RS02835 0.89 -2.6 632,546 + ABCV34_RS02835 0.89 -3.5 632,546 + ABCV34_RS02835 0.89 -2.5 632,547 - ABCV34_RS02835 0.89 -4.3 632,547 - ABCV34_RS02835 0.89 -3.6 632,547 - ABCV34_RS02835 0.89 -0.0 632,547 - ABCV34_RS02835 0.89 -4.9 632,547 - ABCV34_RS02835 0.89 -5.0 632,547 - ABCV34_RS02835 0.89 -3.7 632,547 - ABCV34_RS02835 0.89 -3.7 632,547 - ABCV34_RS02835 0.89 -2.7 632,547 - ABCV34_RS02835 0.89 -3.2 632,547 - ABCV34_RS02835 0.89 -5.1 632,547 - ABCV34_RS02835 0.89 -2.6 632,547 - ABCV34_RS02835 0.89 -1.7 632,550 + ABCV34_RS02835 0.89 -2.5 632,550 + ABCV34_RS02835 0.89 -4.3 632,550 + ABCV34_RS02835 0.89 -3.7 632,576 + -3.7 632,576 + -3.8 632,576 + -4.3 632,576 + -0.6 632,576 + -3.7 632,577 - -2.2 632,577 - -2.3 632,603 + -5.1 632,603 + -0.0 632,639 + -3.0 632,639 + -2.6 632,639 + -2.9 632,640 - -3.9 632,640 - -0.0 632,640 - -3.4 632,640 - -0.0 632,640 - -2.7 632,640 - -3.1 632,640 - -3.7 632,640 - -1.6 632,640 - -2.6 632,747 + -2.8 632,747 + -3.1 632,747 + -2.8 632,747 + -3.7 632,748 - -1.6 632,748 - -2.5 632,748 - -4.1 632,748 - -3.6 632,748 - -0.6 632,748 - -0.0 632,748 - -4.2 632,748 - -1.6 632,777 + ABCV34_RS02840 0.12 -3.0 632,777 + ABCV34_RS02840 0.12 +1.0 632,778 - ABCV34_RS02840 0.12 -2.7 632,778 - ABCV34_RS02840 0.12 -2.2 632,778 - ABCV34_RS02840 0.12 -1.5 632,778 - ABCV34_RS02840 0.12 -3.2 632,798 + ABCV34_RS02840 0.14 -4.3 632,798 + ABCV34_RS02840 0.14 -3.1 632,798 + ABCV34_RS02840 0.14 -5.0 632,798 + ABCV34_RS02840 0.14 -5.4 632,798 + ABCV34_RS02840 0.14 -4.3 632,799 - ABCV34_RS02840 0.14 -2.6 632,799 - ABCV34_RS02840 0.14 -2.3 632,915 + ABCV34_RS02840 0.25 -3.0 632,915 + ABCV34_RS02840 0.25 -3.8 632,915 + ABCV34_RS02840 0.25 -2.3 632,915 + ABCV34_RS02840 0.25 -3.5 632,915 + ABCV34_RS02840 0.25 -2.8 632,915 + ABCV34_RS02840 0.25 -2.6 632,915 + ABCV34_RS02840 0.25 -3.3 632,916 - ABCV34_RS02840 0.25 -3.2 632,916 - ABCV34_RS02840 0.25 -4.1 632,918 - ABCV34_RS02840 0.26 +1.0 633,080 + ABCV34_RS02840 0.41 -0.0 633,080 + ABCV34_RS02840 0.41 -2.4 633,080 + ABCV34_RS02840 0.41 -2.9 633,080 + ABCV34_RS02840 0.41 -2.3 633,200 + ABCV34_RS02840 0.53 -2.2 633,200 + ABCV34_RS02840 0.53 -2.5 633,200 + ABCV34_RS02840 0.53 +1.6 633,201 - ABCV34_RS02840 0.53 -1.3 633,201 - ABCV34_RS02840 0.53 -4.1 633,251 + ABCV34_RS02840 0.58 -1.6 633,252 - ABCV34_RS02840 0.58 -1.3 633,252 - ABCV34_RS02840 0.58 -3.0 633,252 - ABCV34_RS02840 0.58 -4.1 633,252 - ABCV34_RS02840 0.58 +1.6 633,252 - ABCV34_RS02840 0.58 -3.3 633,252 - ABCV34_RS02840 0.58 -3.6 633,252 - ABCV34_RS02840 0.58 -3.3 633,286 + ABCV34_RS02840 0.61 -2.3 633,286 + ABCV34_RS02840 0.61 -2.8 633,286 + ABCV34_RS02840 0.61 -4.7 633,286 + ABCV34_RS02840 0.61 -3.5 633,286 + ABCV34_RS02840 0.61 -3.5 633,286 + ABCV34_RS02840 0.61 -3.6 633,286 + ABCV34_RS02840 0.61 -3.8 633,286 + ABCV34_RS02840 0.61 -3.0 633,287 - ABCV34_RS02840 0.61 -3.3 633,287 - ABCV34_RS02840 0.61 +1.0 633,287 - ABCV34_RS02840 0.61 +0.7 633,287 - ABCV34_RS02840 0.61 -0.0 633,347 + ABCV34_RS02840 0.67 -2.7 633,347 + ABCV34_RS02840 0.67 -4.3 633,347 + ABCV34_RS02840 0.67 -2.4 633,348 - ABCV34_RS02840 0.67 -3.6 633,348 - ABCV34_RS02840 0.67 -4.9 633,365 + ABCV34_RS02840 0.69 -3.0 633,488 + ABCV34_RS02840 0.80 -0.0 633,488 + ABCV34_RS02840 0.80 -2.4 633,488 + ABCV34_RS02840 0.80 -3.5 633,489 - ABCV34_RS02840 0.80 -4.0 633,489 - ABCV34_RS02840 0.80 -5.3 633,489 - ABCV34_RS02840 0.80 -2.3 633,489 - ABCV34_RS02840 0.80 -0.0 633,530 + ABCV34_RS02840 0.84 -3.2 633,530 + ABCV34_RS02840 0.84 -2.4 633,531 - ABCV34_RS02840 0.85 -0.0 633,531 - ABCV34_RS02840 0.85 -3.7 633,558 - ABCV34_RS02840 0.87 -4.5 633,936 + ABCV34_RS02845 0.33 -4.3 633,936 + ABCV34_RS02845 0.33 -2.7 633,936 + ABCV34_RS02845 0.33 -3.1 633,936 + ABCV34_RS02845 0.33 -2.5 634,135 + ABCV34_RS02845 0.60 -4.1 634,332 + ABCV34_RS02845 0.86 -2.3 634,333 - ABCV34_RS02845 0.86 -5.8 634,333 - ABCV34_RS02845 0.86 +0.0 634,414 + -4.2 634,414 + -1.8 634,414 + -2.7 634,415 - +1.0 634,573 + ABCV34_RS02850 0.21 -1.6 634,574 - ABCV34_RS02850 0.22 -4.1 634,574 - ABCV34_RS02850 0.22 -4.0 634,574 - ABCV34_RS02850 0.22 -2.8
Or see this region's nucleotide sequence