Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02335

Experiment: Anaerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02325 and ABCV34_RS02330 overlap by 11 nucleotidesABCV34_RS02330 and ABCV34_RS02335 are separated by 89 nucleotidesABCV34_RS02335 and ABCV34_RS02340 are separated by 21 nucleotidesABCV34_RS02340 and ABCV34_RS02345 overlap by 1 nucleotides ABCV34_RS02325: ABCV34_RS02325 - presqualene diphosphate synthase HpnD, at 517,991 to 518,854 _RS02325 ABCV34_RS02330: ABCV34_RS02330 - squalene synthase HpnC, at 518,844 to 519,731 _RS02330 ABCV34_RS02335: ABCV34_RS02335 - alanine racemase, at 519,821 to 520,939 _RS02335 ABCV34_RS02340: ABCV34_RS02340 - SDR family oxidoreductase, at 520,961 to 521,677 _RS02340 ABCV34_RS02345: ABCV34_RS02345 - DNA repair protein RadA, at 521,677 to 523,032 _RS02345 Position (kb) 519 520 521Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 518.839 kb on - strandat 518.839 kb on - strandat 518.839 kb on - strandat 518.907 kb on + strandat 518.908 kb on - strandat 518.908 kb on - strandat 518.908 kb on - strandat 518.959 kb on + strand, within ABCV34_RS02330at 518.959 kb on + strand, within ABCV34_RS02330at 518.959 kb on + strand, within ABCV34_RS02330at 518.959 kb on + strand, within ABCV34_RS02330at 518.959 kb on + strand, within ABCV34_RS02330at 518.959 kb on + strand, within ABCV34_RS02330at 518.960 kb on - strand, within ABCV34_RS02330at 518.960 kb on - strand, within ABCV34_RS02330at 518.960 kb on - strand, within ABCV34_RS02330at 518.960 kb on - strand, within ABCV34_RS02330at 518.960 kb on - strand, within ABCV34_RS02330at 518.960 kb on - strand, within ABCV34_RS02330at 519.015 kb on + strand, within ABCV34_RS02330at 519.015 kb on + strand, within ABCV34_RS02330at 519.015 kb on + strand, within ABCV34_RS02330at 519.015 kb on + strand, within ABCV34_RS02330at 519.016 kb on - strand, within ABCV34_RS02330at 519.016 kb on - strand, within ABCV34_RS02330at 519.016 kb on - strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.208 kb on + strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.209 kb on - strand, within ABCV34_RS02330at 519.367 kb on + strand, within ABCV34_RS02330at 519.394 kb on + strand, within ABCV34_RS02330at 519.394 kb on + strand, within ABCV34_RS02330at 519.395 kb on - strand, within ABCV34_RS02330at 519.395 kb on - strand, within ABCV34_RS02330at 519.649 kb on + strandat 519.649 kb on + strandat 519.649 kb on + strandat 519.649 kb on + strandat 519.650 kb on - strandat 519.715 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.742 kb on + strandat 519.743 kb on + strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.743 kb on - strandat 519.744 kb on + strandat 519.744 kb on + strandat 519.744 kb on + strandat 519.744 kb on + strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 519.745 kb on - strandat 520.937 kb on + strandat 520.937 kb on + strandat 520.937 kb on + strandat 520.937 kb on + strandat 520.937 kb on + strandat 520.938 kb on - strandat 520.938 kb on - strandat 520.938 kb on - strandat 520.938 kb on - strandat 520.938 kb on - strandat 521.093 kb on + strand, within ABCV34_RS02340at 521.162 kb on + strand, within ABCV34_RS02340at 521.240 kb on + strand, within ABCV34_RS02340at 521.354 kb on + strand, within ABCV34_RS02340at 521.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH5.5
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518,839 - +0.7
518,839 - -0.5
518,839 - +0.2
518,907 + -0.0
518,908 - -0.0
518,908 - -0.6
518,908 - -2.3
518,959 + ABCV34_RS02330 0.13 -3.9
518,959 + ABCV34_RS02330 0.13 -1.6
518,959 + ABCV34_RS02330 0.13 -0.0
518,959 + ABCV34_RS02330 0.13 -2.8
518,959 + ABCV34_RS02330 0.13 -3.8
518,959 + ABCV34_RS02330 0.13 -3.3
518,960 - ABCV34_RS02330 0.13 +1.0
518,960 - ABCV34_RS02330 0.13 -2.6
518,960 - ABCV34_RS02330 0.13 -4.0
518,960 - ABCV34_RS02330 0.13 -3.1
518,960 - ABCV34_RS02330 0.13 -4.3
518,960 - ABCV34_RS02330 0.13 -4.1
519,015 + ABCV34_RS02330 0.19 -0.0
519,015 + ABCV34_RS02330 0.19 -1.6
519,015 + ABCV34_RS02330 0.19 -1.6
519,015 + ABCV34_RS02330 0.19 -2.6
519,016 - ABCV34_RS02330 0.19 -2.9
519,016 - ABCV34_RS02330 0.19 -3.1
519,016 - ABCV34_RS02330 0.19 -3.3
519,208 + ABCV34_RS02330 0.41 -3.1
519,208 + ABCV34_RS02330 0.41 -2.3
519,208 + ABCV34_RS02330 0.41 -1.3
519,208 + ABCV34_RS02330 0.41 -2.9
519,208 + ABCV34_RS02330 0.41 -4.0
519,208 + ABCV34_RS02330 0.41 -3.0
519,208 + ABCV34_RS02330 0.41 -0.8
519,208 + ABCV34_RS02330 0.41 -0.0
519,208 + ABCV34_RS02330 0.41 -0.0
519,209 - ABCV34_RS02330 0.41 -2.3
519,209 - ABCV34_RS02330 0.41 -3.0
519,209 - ABCV34_RS02330 0.41 -2.2
519,209 - ABCV34_RS02330 0.41 -3.6
519,209 - ABCV34_RS02330 0.41 -4.9
519,209 - ABCV34_RS02330 0.41 -2.5
519,209 - ABCV34_RS02330 0.41 -2.5
519,209 - ABCV34_RS02330 0.41 -3.2
519,209 - ABCV34_RS02330 0.41 -3.6
519,209 - ABCV34_RS02330 0.41 -0.0
519,209 - ABCV34_RS02330 0.41 -2.6
519,209 - ABCV34_RS02330 0.41 -2.8
519,209 - ABCV34_RS02330 0.41 -1.8
519,209 - ABCV34_RS02330 0.41 -0.0
519,209 - ABCV34_RS02330 0.41 -1.0
519,209 - ABCV34_RS02330 0.41 -3.1
519,367 + ABCV34_RS02330 0.59 -3.3
519,394 + ABCV34_RS02330 0.62 -0.0
519,394 + ABCV34_RS02330 0.62 -2.3
519,395 - ABCV34_RS02330 0.62 -2.2
519,395 - ABCV34_RS02330 0.62 -3.9
519,649 + -3.6
519,649 + +1.5
519,649 + -2.9
519,649 + -2.6
519,650 - -3.2
519,715 + -0.0
519,742 + -0.5
519,742 + -2.2
519,742 + -0.5
519,742 + -1.1
519,742 + -1.5
519,742 + -3.0
519,742 + -1.7
519,742 + -3.0
519,742 + -2.3
519,742 + -1.5
519,743 + -3.5
519,743 - -2.6
519,743 - -3.3
519,743 - -3.0
519,743 - -3.0
519,743 - -4.7
519,743 - -1.9
519,743 - -3.3
519,743 - -1.9
519,743 - -1.5
519,744 + -1.0
519,744 + -3.0
519,744 + -2.5
519,744 + -3.0
519,745 - -5.5
519,745 - -3.1
519,745 - -3.0
519,745 - -1.8
519,745 - -3.0
519,745 - -4.4
519,745 - -2.6
519,745 - -3.0
519,745 - -3.0
519,745 - -1.8
520,937 + -2.4
520,937 + -2.9
520,937 + -3.9
520,937 + -3.7
520,937 + -1.8
520,938 - -4.9
520,938 - -2.9
520,938 - -4.2
520,938 - -3.0
520,938 - -2.4
521,093 + ABCV34_RS02340 0.18 -1.0
521,162 + ABCV34_RS02340 0.28 -0.7
521,240 + ABCV34_RS02340 0.39 -1.5
521,354 + ABCV34_RS02340 0.55 -1.6
521,707 - -3.5

Or see this region's nucleotide sequence