Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01925

Experiment: Anaerobic, pH5.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS01915 and ABCV34_RS01920 are separated by 15 nucleotidesABCV34_RS01920 and ABCV34_RS01925 are separated by 95 nucleotidesABCV34_RS01925 and ABCV34_RS01930 are separated by 169 nucleotides ABCV34_RS01915: ABCV34_RS01915 - cupredoxin domain-containing protein, at 419,377 to 419,793 _RS01915 ABCV34_RS01920: ABCV34_RS01920 - FTR1 family protein, at 419,809 to 420,666 _RS01920 ABCV34_RS01925: ABCV34_RS01925 - 4Fe-4S binding protein, at 420,762 to 422,192 _RS01925 ABCV34_RS01930: ABCV34_RS01930 - NAD-dependent succinate-semialdehyde dehydrogenase, at 422,362 to 423,807 _RS01930 Position (kb) 420 421 422 423Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 419.777 kb on + strandat 419.801 kb on - strandat 419.808 kb on + strandat 419.808 kb on + strandat 419.875 kb on + strandat 419.876 kb on - strandat 419.876 kb on - strandat 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.745 kb on + strandat 420.746 kb on - strandat 420.879 kb on + strandat 420.880 kb on - strandat 420.980 kb on + strand, within ABCV34_RS01925at 421.158 kb on + strand, within ABCV34_RS01925at 421.158 kb on + strand, within ABCV34_RS01925at 421.158 kb on + strand, within ABCV34_RS01925at 421.158 kb on + strand, within ABCV34_RS01925at 421.159 kb on - strand, within ABCV34_RS01925at 421.179 kb on + strand, within ABCV34_RS01925at 421.179 kb on + strand, within ABCV34_RS01925at 421.179 kb on + strand, within ABCV34_RS01925at 421.179 kb on + strand, within ABCV34_RS01925at 421.179 kb on + strand, within ABCV34_RS01925at 421.185 kb on + strand, within ABCV34_RS01925at 421.220 kb on + strand, within ABCV34_RS01925at 421.220 kb on + strand, within ABCV34_RS01925at 421.221 kb on - strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.281 kb on + strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.282 kb on - strand, within ABCV34_RS01925at 421.303 kb on + strand, within ABCV34_RS01925at 421.335 kb on + strand, within ABCV34_RS01925at 421.335 kb on + strand, within ABCV34_RS01925at 421.335 kb on + strand, within ABCV34_RS01925at 421.336 kb on - strand, within ABCV34_RS01925at 421.336 kb on - strand, within ABCV34_RS01925at 421.336 kb on - strand, within ABCV34_RS01925at 421.665 kb on + strand, within ABCV34_RS01925at 422.250 kb on + strandat 422.250 kb on + strandat 422.250 kb on + strandat 422.250 kb on + strandat 422.250 kb on + strandat 422.251 kb on - strandat 422.251 kb on - strandat 422.251 kb on - strandat 422.251 kb on - strandat 422.251 kb on - strandat 422.282 kb on + strandat 422.283 kb on - strandat 422.334 kb on + strandat 422.334 kb on + strandat 422.334 kb on + strandat 422.335 kb on - strandat 422.335 kb on - strandat 422.335 kb on - strandat 422.367 kb on + strandat 422.367 kb on + strandat 422.367 kb on + strandat 422.367 kb on + strandat 422.368 kb on - strandat 422.368 kb on - strandat 422.368 kb on - strandat 422.368 kb on - strandat 422.377 kb on + strandat 422.814 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.981 kb on + strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.982 kb on - strand, within ABCV34_RS01930at 422.983 kb on + strand, within ABCV34_RS01930at 422.983 kb on + strand, within ABCV34_RS01930at 422.983 kb on + strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930at 422.984 kb on - strand, within ABCV34_RS01930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH5.5
remove
419,777 + -3.9
419,801 - -3.2
419,808 + -2.7
419,808 + -4.2
419,875 + -4.2
419,876 - -3.0
419,876 - -5.8
420,220 + ABCV34_RS01920 0.48 -4.0
420,220 + ABCV34_RS01920 0.48 -5.8
420,220 + ABCV34_RS01920 0.48 -6.3
420,220 + ABCV34_RS01920 0.48 -6.5
420,220 + ABCV34_RS01920 0.48 -3.9
420,220 + ABCV34_RS01920 0.48 -5.2
420,220 + ABCV34_RS01920 0.48 -3.8
420,220 + ABCV34_RS01920 0.48 -5.2
420,220 + ABCV34_RS01920 0.48 -6.1
420,255 + ABCV34_RS01920 0.52 -2.5
420,255 + ABCV34_RS01920 0.52 -5.7
420,255 + ABCV34_RS01920 0.52 -3.9
420,255 + ABCV34_RS01920 0.52 -3.7
420,255 + ABCV34_RS01920 0.52 -3.6
420,745 + -1.2
420,746 - -0.0
420,879 + -4.8
420,880 - -2.8
420,980 + ABCV34_RS01925 0.15 -2.3
421,158 + ABCV34_RS01925 0.28 -0.0
421,158 + ABCV34_RS01925 0.28 -4.7
421,158 + ABCV34_RS01925 0.28 -5.3
421,158 + ABCV34_RS01925 0.28 -6.0
421,159 - ABCV34_RS01925 0.28 -0.0
421,179 + ABCV34_RS01925 0.29 -3.0
421,179 + ABCV34_RS01925 0.29 -3.4
421,179 + ABCV34_RS01925 0.29 -4.9
421,179 + ABCV34_RS01925 0.29 -3.0
421,179 + ABCV34_RS01925 0.29 -4.2
421,185 + ABCV34_RS01925 0.30 -5.5
421,220 + ABCV34_RS01925 0.32 -4.5
421,220 + ABCV34_RS01925 0.32 -6.6
421,221 - ABCV34_RS01925 0.32 -1.0
421,281 + ABCV34_RS01925 0.36 -2.4
421,281 + ABCV34_RS01925 0.36 -4.5
421,281 + ABCV34_RS01925 0.36 -2.0
421,281 + ABCV34_RS01925 0.36 -2.2
421,281 + ABCV34_RS01925 0.36 +2.3
421,281 + ABCV34_RS01925 0.36 -4.8
421,281 + ABCV34_RS01925 0.36 -4.5
421,281 + ABCV34_RS01925 0.36 -0.0
421,281 + ABCV34_RS01925 0.36 -2.0
421,282 - ABCV34_RS01925 0.36 -2.4
421,282 - ABCV34_RS01925 0.36 -2.6
421,282 - ABCV34_RS01925 0.36 -3.7
421,282 - ABCV34_RS01925 0.36 -1.4
421,282 - ABCV34_RS01925 0.36 -3.5
421,282 - ABCV34_RS01925 0.36 -2.4
421,282 - ABCV34_RS01925 0.36 -2.7
421,282 - ABCV34_RS01925 0.36 -1.6
421,282 - ABCV34_RS01925 0.36 -1.6
421,303 + ABCV34_RS01925 0.38 -4.0
421,335 + ABCV34_RS01925 0.40 -3.6
421,335 + ABCV34_RS01925 0.40 -3.5
421,335 + ABCV34_RS01925 0.40 -2.4
421,336 - ABCV34_RS01925 0.40 -0.0
421,336 - ABCV34_RS01925 0.40 -2.8
421,336 - ABCV34_RS01925 0.40 -2.8
421,665 + ABCV34_RS01925 0.63 -4.7
422,250 + +1.0
422,250 + -1.5
422,250 + -4.3
422,250 + -0.0
422,250 + -3.0
422,251 - -1.6
422,251 - -1.0
422,251 - -1.0
422,251 - -1.6
422,251 - -4.4
422,282 + -3.8
422,283 - -2.4
422,334 + -3.5
422,334 + -1.7
422,334 + -1.6
422,335 - -1.6
422,335 - -3.1
422,335 - -2.1
422,367 + -2.6
422,367 + -2.4
422,367 + -0.0
422,367 + -3.1
422,368 - -2.0
422,368 - -3.0
422,368 - -2.9
422,368 - -2.0
422,377 + -1.4
422,814 + ABCV34_RS01930 0.31 -1.8
422,981 + ABCV34_RS01930 0.43 +1.0
422,981 + ABCV34_RS01930 0.43 -2.4
422,981 + ABCV34_RS01930 0.43 -3.2
422,981 + ABCV34_RS01930 0.43 -2.2
422,981 + ABCV34_RS01930 0.43 -2.4
422,981 + ABCV34_RS01930 0.43 -3.3
422,981 + ABCV34_RS01930 0.43 -0.0
422,981 + ABCV34_RS01930 0.43 -3.8
422,981 + ABCV34_RS01930 0.43 -0.7
422,981 + ABCV34_RS01930 0.43 -1.8
422,981 + ABCV34_RS01930 0.43 -3.7
422,981 + ABCV34_RS01930 0.43 -2.8
422,982 - ABCV34_RS01930 0.43 -2.6
422,982 - ABCV34_RS01930 0.43 -3.2
422,982 - ABCV34_RS01930 0.43 -2.5
422,982 - ABCV34_RS01930 0.43 -1.3
422,982 - ABCV34_RS01930 0.43 -2.6
422,982 - ABCV34_RS01930 0.43 -3.6
422,982 - ABCV34_RS01930 0.43 -2.4
422,982 - ABCV34_RS01930 0.43 -3.7
422,982 - ABCV34_RS01930 0.43 -3.1
422,982 - ABCV34_RS01930 0.43 -4.4
422,982 - ABCV34_RS01930 0.43 -2.6
422,983 + ABCV34_RS01930 0.43 -4.1
422,983 + ABCV34_RS01930 0.43 -3.1
422,983 + ABCV34_RS01930 0.43 -0.0
422,984 - ABCV34_RS01930 0.43 -2.7
422,984 - ABCV34_RS01930 0.43 -4.2
422,984 - ABCV34_RS01930 0.43 -0.0
422,984 - ABCV34_RS01930 0.43 -0.6
422,984 - ABCV34_RS01930 0.43 -2.7
422,984 - ABCV34_RS01930 0.43 -2.8
422,984 - ABCV34_RS01930 0.43 -0.0
422,984 - ABCV34_RS01930 0.43 -2.6

Or see this region's nucleotide sequence