Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01670

Experiment: Anaerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01665 and ABCV34_RS01670 are separated by 52 nucleotidesABCV34_RS01670 and ABCV34_RS01675 are separated by 234 nucleotides ABCV34_RS01665: ABCV34_RS01665 - 2-methylcitrate synthase, at 358,000 to 359,265 _RS01665 ABCV34_RS01670: ABCV34_RS01670 - methylisocitrate lyase, at 359,318 to 360,217 _RS01670 ABCV34_RS01675: ABCV34_RS01675 - malate dehydrogenase, at 360,452 to 361,441 _RS01675 Position (kb) 359 360 361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 358.340 kb on + strand, within ABCV34_RS01665at 358.341 kb on - strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.511 kb on + strand, within ABCV34_RS01665at 358.512 kb on - strand, within ABCV34_RS01665at 358.512 kb on - strand, within ABCV34_RS01665at 358.512 kb on - strand, within ABCV34_RS01665at 358.512 kb on - strand, within ABCV34_RS01665at 358.512 kb on - strand, within ABCV34_RS01665at 358.581 kb on - strand, within ABCV34_RS01665at 358.712 kb on + strand, within ABCV34_RS01665at 358.712 kb on + strand, within ABCV34_RS01665at 358.718 kb on + strand, within ABCV34_RS01665at 358.724 kb on + strand, within ABCV34_RS01665at 358.725 kb on - strand, within ABCV34_RS01665at 358.725 kb on - strand, within ABCV34_RS01665at 358.934 kb on + strand, within ABCV34_RS01665at 358.934 kb on + strand, within ABCV34_RS01665at 358.934 kb on + strand, within ABCV34_RS01665at 358.935 kb on - strand, within ABCV34_RS01665at 358.935 kb on - strand, within ABCV34_RS01665at 358.935 kb on - strand, within ABCV34_RS01665at 358.935 kb on - strand, within ABCV34_RS01665at 358.935 kb on - strand, within ABCV34_RS01665at 359.394 kb on + strandat 359.394 kb on + strandat 359.395 kb on - strandat 359.395 kb on - strandat 359.463 kb on + strand, within ABCV34_RS01670at 359.512 kb on - strand, within ABCV34_RS01670at 359.600 kb on + strand, within ABCV34_RS01670at 359.600 kb on + strand, within ABCV34_RS01670at 359.600 kb on + strand, within ABCV34_RS01670at 359.600 kb on + strand, within ABCV34_RS01670at 359.601 kb on - strand, within ABCV34_RS01670at 359.614 kb on + strand, within ABCV34_RS01670at 359.614 kb on + strand, within ABCV34_RS01670at 359.628 kb on + strand, within ABCV34_RS01670at 359.628 kb on + strand, within ABCV34_RS01670at 359.628 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.643 kb on + strand, within ABCV34_RS01670at 359.644 kb on - strand, within ABCV34_RS01670at 359.644 kb on - strand, within ABCV34_RS01670at 359.644 kb on - strand, within ABCV34_RS01670at 359.644 kb on - strand, within ABCV34_RS01670at 359.644 kb on - strand, within ABCV34_RS01670at 359.644 kb on - strand, within ABCV34_RS01670at 359.754 kb on + strand, within ABCV34_RS01670at 359.861 kb on + strand, within ABCV34_RS01670at 359.861 kb on + strand, within ABCV34_RS01670at 360.023 kb on + strand, within ABCV34_RS01670at 360.023 kb on + strand, within ABCV34_RS01670at 360.023 kb on + strand, within ABCV34_RS01670at 360.024 kb on - strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.087 kb on + strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.088 kb on - strand, within ABCV34_RS01670at 360.453 kb on + strandat 360.453 kb on + strandat 360.454 kb on - strandat 360.454 kb on - strandat 360.454 kb on - strandat 360.459 kb on - strandat 360.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH5.5
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358,340 + ABCV34_RS01665 0.27 +1.8
358,341 - ABCV34_RS01665 0.27 +0.7
358,511 + ABCV34_RS01665 0.40 -0.0
358,511 + ABCV34_RS01665 0.40 +1.0
358,511 + ABCV34_RS01665 0.40 +1.0
358,511 + ABCV34_RS01665 0.40 +0.5
358,511 + ABCV34_RS01665 0.40 +1.0
358,511 + ABCV34_RS01665 0.40 +1.1
358,511 + ABCV34_RS01665 0.40 -2.4
358,511 + ABCV34_RS01665 0.40 +0.2
358,511 + ABCV34_RS01665 0.40 +1.3
358,511 + ABCV34_RS01665 0.40 +0.3
358,511 + ABCV34_RS01665 0.40 +2.0
358,512 - ABCV34_RS01665 0.40 +0.4
358,512 - ABCV34_RS01665 0.40 +0.9
358,512 - ABCV34_RS01665 0.40 -0.0
358,512 - ABCV34_RS01665 0.40 +0.3
358,512 - ABCV34_RS01665 0.40 +2.3
358,581 - ABCV34_RS01665 0.46 -0.0
358,712 + ABCV34_RS01665 0.56 -0.0
358,712 + ABCV34_RS01665 0.56 -1.0
358,718 + ABCV34_RS01665 0.57 +0.2
358,724 + ABCV34_RS01665 0.57 +1.1
358,725 - ABCV34_RS01665 0.57 +1.0
358,725 - ABCV34_RS01665 0.57 +1.2
358,934 + ABCV34_RS01665 0.74 +0.6
358,934 + ABCV34_RS01665 0.74 +1.5
358,934 + ABCV34_RS01665 0.74 +0.4
358,935 - ABCV34_RS01665 0.74 +1.5
358,935 - ABCV34_RS01665 0.74 +1.0
358,935 - ABCV34_RS01665 0.74 +1.1
358,935 - ABCV34_RS01665 0.74 -0.6
358,935 - ABCV34_RS01665 0.74 +1.0
359,394 + -2.8
359,394 + -1.0
359,395 - -2.0
359,395 - -2.8
359,463 + ABCV34_RS01670 0.16 +1.5
359,512 - ABCV34_RS01670 0.22 -1.6
359,600 + ABCV34_RS01670 0.31 -2.0
359,600 + ABCV34_RS01670 0.31 -1.6
359,600 + ABCV34_RS01670 0.31 +1.0
359,600 + ABCV34_RS01670 0.31 -3.4
359,601 - ABCV34_RS01670 0.31 -3.1
359,614 + ABCV34_RS01670 0.33 +1.5
359,614 + ABCV34_RS01670 0.33 -1.0
359,628 + ABCV34_RS01670 0.34 -0.0
359,628 + ABCV34_RS01670 0.34 -0.5
359,628 + ABCV34_RS01670 0.34 -0.7
359,643 + ABCV34_RS01670 0.36 -3.0
359,643 + ABCV34_RS01670 0.36 -1.0
359,643 + ABCV34_RS01670 0.36 -3.6
359,643 + ABCV34_RS01670 0.36 -1.5
359,643 + ABCV34_RS01670 0.36 -1.0
359,643 + ABCV34_RS01670 0.36 -3.7
359,643 + ABCV34_RS01670 0.36 -0.8
359,643 + ABCV34_RS01670 0.36 -2.6
359,644 - ABCV34_RS01670 0.36 -1.0
359,644 - ABCV34_RS01670 0.36 -3.4
359,644 - ABCV34_RS01670 0.36 -2.0
359,644 - ABCV34_RS01670 0.36 -1.6
359,644 - ABCV34_RS01670 0.36 -1.0
359,644 - ABCV34_RS01670 0.36 -0.5
359,754 + ABCV34_RS01670 0.48 -2.0
359,861 + ABCV34_RS01670 0.60 -0.6
359,861 + ABCV34_RS01670 0.60 -0.0
360,023 + ABCV34_RS01670 0.78 -0.0
360,023 + ABCV34_RS01670 0.78 -1.6
360,023 + ABCV34_RS01670 0.78 -0.0
360,024 - ABCV34_RS01670 0.78 +0.2
360,087 + ABCV34_RS01670 0.85 -0.0
360,087 + ABCV34_RS01670 0.85 +1.1
360,087 + ABCV34_RS01670 0.85 +0.2
360,087 + ABCV34_RS01670 0.85 +0.8
360,087 + ABCV34_RS01670 0.85 -0.4
360,087 + ABCV34_RS01670 0.85 +0.3
360,087 + ABCV34_RS01670 0.85 +1.4
360,088 - ABCV34_RS01670 0.86 -1.5
360,088 - ABCV34_RS01670 0.86 -2.0
360,088 - ABCV34_RS01670 0.86 +1.0
360,088 - ABCV34_RS01670 0.86 -0.6
360,088 - ABCV34_RS01670 0.86 -1.8
360,088 - ABCV34_RS01670 0.86 -0.0
360,088 - ABCV34_RS01670 0.86 -0.0
360,453 + -1.9
360,453 + -0.8
360,454 - -1.6
360,454 - -2.4
360,454 - -2.4
360,459 - -4.0
360,459 - -3.3

Or see this region's nucleotide sequence