Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01495

Experiment: Anaerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01490 and ABCV34_RS01495 overlap by 8 nucleotidesABCV34_RS01495 and ABCV34_RS01500 overlap by 1 nucleotides ABCV34_RS01490: ABCV34_RS01490 - TRAP transporter large permease subunit, at 317,499 to 318,794 _RS01490 ABCV34_RS01495: ABCV34_RS01495 - TRAP transporter small permease, at 318,787 to 319,293 _RS01495 ABCV34_RS01500: ABCV34_RS01500 - TRAP transporter substrate-binding protein, at 319,293 to 320,273 _RS01500 Position (kb) 318 319 320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 317.806 kb on + strand, within ABCV34_RS01490at 317.806 kb on + strand, within ABCV34_RS01490at 317.806 kb on + strand, within ABCV34_RS01490at 317.807 kb on - strand, within ABCV34_RS01490at 317.807 kb on - strand, within ABCV34_RS01490at 317.893 kb on + strand, within ABCV34_RS01490at 317.893 kb on + strand, within ABCV34_RS01490at 317.893 kb on + strand, within ABCV34_RS01490at 317.893 kb on + strand, within ABCV34_RS01490at 317.894 kb on - strand, within ABCV34_RS01490at 317.894 kb on - strand, within ABCV34_RS01490at 317.894 kb on - strand, within ABCV34_RS01490at 317.894 kb on - strand, within ABCV34_RS01490at 317.950 kb on + strand, within ABCV34_RS01490at 317.950 kb on + strand, within ABCV34_RS01490at 317.951 kb on - strand, within ABCV34_RS01490at 317.951 kb on - strand, within ABCV34_RS01490at 317.951 kb on - strand, within ABCV34_RS01490at 317.951 kb on - strand, within ABCV34_RS01490at 317.951 kb on - strand, within ABCV34_RS01490at 318.079 kb on + strand, within ABCV34_RS01490at 318.079 kb on + strand, within ABCV34_RS01490at 318.079 kb on + strand, within ABCV34_RS01490at 318.079 kb on + strand, within ABCV34_RS01490at 318.079 kb on + strand, within ABCV34_RS01490at 318.079 kb on + strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.080 kb on - strand, within ABCV34_RS01490at 318.304 kb on + strand, within ABCV34_RS01490at 318.305 kb on - strand, within ABCV34_RS01490at 318.305 kb on - strand, within ABCV34_RS01490at 318.305 kb on - strand, within ABCV34_RS01490at 318.305 kb on - strand, within ABCV34_RS01490at 318.317 kb on + strand, within ABCV34_RS01490at 318.471 kb on + strand, within ABCV34_RS01490at 318.471 kb on + strand, within ABCV34_RS01490at 318.471 kb on + strand, within ABCV34_RS01490at 318.471 kb on + strand, within ABCV34_RS01490at 318.471 kb on + strand, within ABCV34_RS01490at 318.471 kb on + strand, within ABCV34_RS01490at 318.472 kb on - strand, within ABCV34_RS01490at 318.472 kb on - strand, within ABCV34_RS01490at 318.495 kb on - strand, within ABCV34_RS01490at 318.495 kb on - strand, within ABCV34_RS01490at 318.495 kb on - strand, within ABCV34_RS01490at 318.495 kb on - strand, within ABCV34_RS01490at 318.572 kb on - strand, within ABCV34_RS01490at 318.983 kb on + strand, within ABCV34_RS01495at 318.984 kb on - strand, within ABCV34_RS01495at 318.984 kb on - strand, within ABCV34_RS01495at 318.984 kb on - strand, within ABCV34_RS01495at 319.157 kb on + strand, within ABCV34_RS01495at 319.158 kb on - strand, within ABCV34_RS01495at 319.158 kb on - strand, within ABCV34_RS01495at 319.158 kb on - strand, within ABCV34_RS01495at 319.158 kb on - strand, within ABCV34_RS01495at 319.268 kb on + strandat 319.268 kb on + strandat 319.268 kb on + strandat 319.268 kb on + strandat 319.268 kb on + strandat 319.268 kb on + strandat 319.268 kb on + strandat 319.269 kb on - strandat 319.269 kb on - strandat 319.269 kb on - strandat 319.269 kb on - strandat 319.269 kb on - strandat 319.269 kb on - strandat 319.612 kb on + strand, within ABCV34_RS01500at 319.612 kb on + strand, within ABCV34_RS01500at 319.612 kb on + strand, within ABCV34_RS01500at 319.613 kb on - strand, within ABCV34_RS01500at 319.613 kb on - strand, within ABCV34_RS01500at 319.613 kb on - strand, within ABCV34_RS01500at 319.613 kb on - strand, within ABCV34_RS01500at 319.771 kb on + strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.772 kb on - strand, within ABCV34_RS01500at 319.820 kb on + strand, within ABCV34_RS01500at 319.821 kb on - strand, within ABCV34_RS01500at 319.821 kb on - strand, within ABCV34_RS01500at 319.821 kb on - strand, within ABCV34_RS01500at 319.821 kb on - strand, within ABCV34_RS01500at 319.826 kb on + strand, within ABCV34_RS01500at 319.826 kb on + strand, within ABCV34_RS01500at 319.826 kb on + strand, within ABCV34_RS01500at 319.826 kb on + strand, within ABCV34_RS01500at 319.826 kb on + strand, within ABCV34_RS01500at 319.826 kb on + strand, within ABCV34_RS01500at 319.827 kb on - strand, within ABCV34_RS01500at 319.827 kb on - strand, within ABCV34_RS01500at 319.827 kb on - strand, within ABCV34_RS01500at 319.827 kb on - strand, within ABCV34_RS01500at 319.827 kb on - strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.828 kb on + strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.829 kb on - strand, within ABCV34_RS01500at 319.858 kb on + strand, within ABCV34_RS01500at 319.858 kb on + strand, within ABCV34_RS01500at 319.859 kb on - strand, within ABCV34_RS01500at 319.918 kb on + strand, within ABCV34_RS01500at 319.919 kb on - strand, within ABCV34_RS01500at 319.919 kb on - strand, within ABCV34_RS01500at 319.939 kb on + strand, within ABCV34_RS01500at 319.939 kb on + strand, within ABCV34_RS01500at 319.939 kb on + strand, within ABCV34_RS01500at 319.940 kb on - strand, within ABCV34_RS01500at 319.940 kb on - strand, within ABCV34_RS01500at 319.940 kb on - strand, within ABCV34_RS01500at 319.940 kb on - strand, within ABCV34_RS01500

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH5.5
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317,806 + ABCV34_RS01490 0.24 -1.6
317,806 + ABCV34_RS01490 0.24 -1.6
317,806 + ABCV34_RS01490 0.24 -2.0
317,807 - ABCV34_RS01490 0.24 -0.0
317,807 - ABCV34_RS01490 0.24 -2.0
317,893 + ABCV34_RS01490 0.30 -1.2
317,893 + ABCV34_RS01490 0.30 -1.0
317,893 + ABCV34_RS01490 0.30 -0.8
317,893 + ABCV34_RS01490 0.30 -1.6
317,894 - ABCV34_RS01490 0.30 -0.0
317,894 - ABCV34_RS01490 0.30 -1.4
317,894 - ABCV34_RS01490 0.30 -0.9
317,894 - ABCV34_RS01490 0.30 -0.5
317,950 + ABCV34_RS01490 0.35 -0.0
317,950 + ABCV34_RS01490 0.35 -1.4
317,951 - ABCV34_RS01490 0.35 -1.0
317,951 - ABCV34_RS01490 0.35 -1.0
317,951 - ABCV34_RS01490 0.35 -2.0
317,951 - ABCV34_RS01490 0.35 -0.5
317,951 - ABCV34_RS01490 0.35 -1.3
318,079 + ABCV34_RS01490 0.45 -1.3
318,079 + ABCV34_RS01490 0.45 -0.5
318,079 + ABCV34_RS01490 0.45 -1.5
318,079 + ABCV34_RS01490 0.45 -1.3
318,079 + ABCV34_RS01490 0.45 -1.3
318,079 + ABCV34_RS01490 0.45 -0.7
318,080 - ABCV34_RS01490 0.45 -1.1
318,080 - ABCV34_RS01490 0.45 -1.5
318,080 - ABCV34_RS01490 0.45 -1.8
318,080 - ABCV34_RS01490 0.45 -1.3
318,080 - ABCV34_RS01490 0.45 +0.0
318,080 - ABCV34_RS01490 0.45 -1.5
318,080 - ABCV34_RS01490 0.45 -0.5
318,304 + ABCV34_RS01490 0.62 -2.0
318,305 - ABCV34_RS01490 0.62 -1.6
318,305 - ABCV34_RS01490 0.62 -1.1
318,305 - ABCV34_RS01490 0.62 -0.9
318,305 - ABCV34_RS01490 0.62 -2.2
318,317 + ABCV34_RS01490 0.63 -2.0
318,471 + ABCV34_RS01490 0.75 -0.0
318,471 + ABCV34_RS01490 0.75 -2.4
318,471 + ABCV34_RS01490 0.75 -0.5
318,471 + ABCV34_RS01490 0.75 -0.0
318,471 + ABCV34_RS01490 0.75 -1.3
318,471 + ABCV34_RS01490 0.75 -0.6
318,472 - ABCV34_RS01490 0.75 -0.5
318,472 - ABCV34_RS01490 0.75 -0.8
318,495 - ABCV34_RS01490 0.77 -0.7
318,495 - ABCV34_RS01490 0.77 -1.8
318,495 - ABCV34_RS01490 0.77 -0.2
318,495 - ABCV34_RS01490 0.77 -1.2
318,572 - ABCV34_RS01490 0.83 +0.3
318,983 + ABCV34_RS01495 0.39 -1.3
318,984 - ABCV34_RS01495 0.39 -0.9
318,984 - ABCV34_RS01495 0.39 -1.5
318,984 - ABCV34_RS01495 0.39 -0.6
319,157 + ABCV34_RS01495 0.73 -1.6
319,158 - ABCV34_RS01495 0.73 -0.8
319,158 - ABCV34_RS01495 0.73 -0.6
319,158 - ABCV34_RS01495 0.73 -1.3
319,158 - ABCV34_RS01495 0.73 -1.7
319,268 + +1.0
319,268 + -0.8
319,268 + -0.7
319,268 + -0.7
319,268 + -2.1
319,268 + -1.4
319,268 + -1.6
319,269 - -1.8
319,269 - -1.8
319,269 - -1.4
319,269 - +0.5
319,269 - -0.8
319,269 - -2.9
319,612 + ABCV34_RS01500 0.33 -0.0
319,612 + ABCV34_RS01500 0.33 +0.4
319,612 + ABCV34_RS01500 0.33 -0.5
319,613 - ABCV34_RS01500 0.33 -0.0
319,613 - ABCV34_RS01500 0.33 -1.7
319,613 - ABCV34_RS01500 0.33 +0.0
319,613 - ABCV34_RS01500 0.33 -2.0
319,771 + ABCV34_RS01500 0.49 -2.4
319,772 - ABCV34_RS01500 0.49 -1.3
319,772 - ABCV34_RS01500 0.49 +1.0
319,772 - ABCV34_RS01500 0.49 -2.4
319,772 - ABCV34_RS01500 0.49 -1.0
319,772 - ABCV34_RS01500 0.49 -2.5
319,772 - ABCV34_RS01500 0.49 -2.2
319,772 - ABCV34_RS01500 0.49 -0.6
319,772 - ABCV34_RS01500 0.49 -1.6
319,772 - ABCV34_RS01500 0.49 -0.0
319,772 - ABCV34_RS01500 0.49 -1.4
319,820 + ABCV34_RS01500 0.54 -1.5
319,821 - ABCV34_RS01500 0.54 -1.3
319,821 - ABCV34_RS01500 0.54 -2.7
319,821 - ABCV34_RS01500 0.54 -0.3
319,821 - ABCV34_RS01500 0.54 -2.3
319,826 + ABCV34_RS01500 0.54 -0.8
319,826 + ABCV34_RS01500 0.54 -1.9
319,826 + ABCV34_RS01500 0.54 +1.0
319,826 + ABCV34_RS01500 0.54 -1.5
319,826 + ABCV34_RS01500 0.54 -1.9
319,826 + ABCV34_RS01500 0.54 -1.1
319,827 - ABCV34_RS01500 0.54 -1.8
319,827 - ABCV34_RS01500 0.54 -1.7
319,827 - ABCV34_RS01500 0.54 -1.9
319,827 - ABCV34_RS01500 0.54 -1.1
319,827 - ABCV34_RS01500 0.54 -0.6
319,828 + ABCV34_RS01500 0.55 -0.0
319,828 + ABCV34_RS01500 0.55 -0.0
319,828 + ABCV34_RS01500 0.55 -0.8
319,828 + ABCV34_RS01500 0.55 -1.9
319,828 + ABCV34_RS01500 0.55 -2.5
319,828 + ABCV34_RS01500 0.55 -0.5
319,828 + ABCV34_RS01500 0.55 -1.9
319,828 + ABCV34_RS01500 0.55 -3.0
319,828 + ABCV34_RS01500 0.55 +0.4
319,828 + ABCV34_RS01500 0.55 -0.6
319,828 + ABCV34_RS01500 0.55 +0.2
319,828 + ABCV34_RS01500 0.55 -1.0
319,828 + ABCV34_RS01500 0.55 -0.0
319,828 + ABCV34_RS01500 0.55 -1.2
319,828 + ABCV34_RS01500 0.55 -2.0
319,828 + ABCV34_RS01500 0.55 -1.2
319,829 - ABCV34_RS01500 0.55 -0.8
319,829 - ABCV34_RS01500 0.55 -2.4
319,829 - ABCV34_RS01500 0.55 -2.5
319,829 - ABCV34_RS01500 0.55 -1.5
319,829 - ABCV34_RS01500 0.55 -1.1
319,829 - ABCV34_RS01500 0.55 -1.0
319,829 - ABCV34_RS01500 0.55 -1.0
319,829 - ABCV34_RS01500 0.55 -2.7
319,829 - ABCV34_RS01500 0.55 -1.3
319,829 - ABCV34_RS01500 0.55 -0.0
319,829 - ABCV34_RS01500 0.55 -2.3
319,829 - ABCV34_RS01500 0.55 -1.5
319,829 - ABCV34_RS01500 0.55 -0.8
319,858 + ABCV34_RS01500 0.58 -1.6
319,858 + ABCV34_RS01500 0.58 -1.5
319,859 - ABCV34_RS01500 0.58 -1.3
319,918 + ABCV34_RS01500 0.64 -1.8
319,919 - ABCV34_RS01500 0.64 -0.8
319,919 - ABCV34_RS01500 0.64 -1.2
319,939 + ABCV34_RS01500 0.66 +1.6
319,939 + ABCV34_RS01500 0.66 -1.6
319,939 + ABCV34_RS01500 0.66 -2.0
319,940 - ABCV34_RS01500 0.66 -4.4
319,940 - ABCV34_RS01500 0.66 -0.0
319,940 - ABCV34_RS01500 0.66 -2.9
319,940 - ABCV34_RS01500 0.66 -1.4

Or see this region's nucleotide sequence