Experiment: Anaerobic, pH5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS01480 and ABCV34_RS01485 are separated by 0 nucleotides ABCV34_RS01485 and ABCV34_RS01490 are separated by 25 nucleotides ABCV34_RS01490 and ABCV34_RS01495 overlap by 8 nucleotides ABCV34_RS01495 and ABCV34_RS01500 overlap by 1 nucleotides
ABCV34_RS01480: ABCV34_RS01480 - potassium transporter TrkG, at 315,452 to 316,816
_RS01480
ABCV34_RS01485: ABCV34_RS01485 - TrkA family potassium uptake protein, at 316,817 to 317,473
_RS01485
ABCV34_RS01490: ABCV34_RS01490 - TRAP transporter large permease subunit, at 317,499 to 318,794
_RS01490
ABCV34_RS01495: ABCV34_RS01495 - TRAP transporter small permease, at 318,787 to 319,293
_RS01495
ABCV34_RS01500: ABCV34_RS01500 - TRAP transporter substrate-binding protein, at 319,293 to 320,273
_RS01500
Position (kb) 317
318
319 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 316.782 kb on + strand at 316.864 kb on - strand at 316.864 kb on - strand at 317.045 kb on - strand, within ABCV34_RS01485 at 317.058 kb on + strand, within ABCV34_RS01485 at 317.058 kb on + strand, within ABCV34_RS01485 at 317.058 kb on + strand, within ABCV34_RS01485 at 317.059 kb on - strand, within ABCV34_RS01485 at 317.059 kb on - strand, within ABCV34_RS01485 at 317.059 kb on - strand, within ABCV34_RS01485 at 317.059 kb on - strand, within ABCV34_RS01485 at 317.277 kb on + strand, within ABCV34_RS01485 at 317.277 kb on + strand, within ABCV34_RS01485 at 317.277 kb on + strand, within ABCV34_RS01485 at 317.278 kb on - strand, within ABCV34_RS01485 at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.504 kb on + strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.505 kb on - strand at 317.544 kb on + strand at 317.545 kb on - strand at 317.545 kb on - strand at 317.545 kb on - strand at 317.545 kb on - strand at 317.578 kb on + strand at 317.579 kb on - strand at 317.602 kb on + strand at 317.602 kb on + strand at 317.602 kb on + strand at 317.602 kb on + strand at 317.602 kb on + strand at 317.603 kb on - strand at 317.603 kb on - strand at 317.603 kb on - strand at 317.603 kb on - strand at 317.603 kb on - strand at 317.603 kb on - strand at 317.763 kb on + strand, within ABCV34_RS01490 at 317.764 kb on - strand, within ABCV34_RS01490 at 317.764 kb on - strand, within ABCV34_RS01490 at 317.806 kb on + strand, within ABCV34_RS01490 at 317.806 kb on + strand, within ABCV34_RS01490 at 317.806 kb on + strand, within ABCV34_RS01490 at 317.807 kb on - strand, within ABCV34_RS01490 at 317.807 kb on - strand, within ABCV34_RS01490 at 317.893 kb on + strand, within ABCV34_RS01490 at 317.893 kb on + strand, within ABCV34_RS01490 at 317.893 kb on + strand, within ABCV34_RS01490 at 317.893 kb on + strand, within ABCV34_RS01490 at 317.894 kb on - strand, within ABCV34_RS01490 at 317.894 kb on - strand, within ABCV34_RS01490 at 317.894 kb on - strand, within ABCV34_RS01490 at 317.894 kb on - strand, within ABCV34_RS01490 at 317.950 kb on + strand, within ABCV34_RS01490 at 317.950 kb on + strand, within ABCV34_RS01490 at 317.951 kb on - strand, within ABCV34_RS01490 at 317.951 kb on - strand, within ABCV34_RS01490 at 317.951 kb on - strand, within ABCV34_RS01490 at 317.951 kb on - strand, within ABCV34_RS01490 at 317.951 kb on - strand, within ABCV34_RS01490 at 318.079 kb on + strand, within ABCV34_RS01490 at 318.079 kb on + strand, within ABCV34_RS01490 at 318.079 kb on + strand, within ABCV34_RS01490 at 318.079 kb on + strand, within ABCV34_RS01490 at 318.079 kb on + strand, within ABCV34_RS01490 at 318.079 kb on + strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.080 kb on - strand, within ABCV34_RS01490 at 318.304 kb on + strand, within ABCV34_RS01490 at 318.305 kb on - strand, within ABCV34_RS01490 at 318.305 kb on - strand, within ABCV34_RS01490 at 318.305 kb on - strand, within ABCV34_RS01490 at 318.305 kb on - strand, within ABCV34_RS01490 at 318.317 kb on + strand, within ABCV34_RS01490 at 318.471 kb on + strand, within ABCV34_RS01490 at 318.471 kb on + strand, within ABCV34_RS01490 at 318.471 kb on + strand, within ABCV34_RS01490 at 318.471 kb on + strand, within ABCV34_RS01490 at 318.471 kb on + strand, within ABCV34_RS01490 at 318.471 kb on + strand, within ABCV34_RS01490 at 318.472 kb on - strand, within ABCV34_RS01490 at 318.472 kb on - strand, within ABCV34_RS01490 at 318.495 kb on - strand, within ABCV34_RS01490 at 318.495 kb on - strand, within ABCV34_RS01490 at 318.495 kb on - strand, within ABCV34_RS01490 at 318.495 kb on - strand, within ABCV34_RS01490 at 318.572 kb on - strand, within ABCV34_RS01490 at 318.983 kb on + strand, within ABCV34_RS01495 at 318.984 kb on - strand, within ABCV34_RS01495 at 318.984 kb on - strand, within ABCV34_RS01495 at 318.984 kb on - strand, within ABCV34_RS01495 at 319.157 kb on + strand, within ABCV34_RS01495 at 319.158 kb on - strand, within ABCV34_RS01495 at 319.158 kb on - strand, within ABCV34_RS01495 at 319.158 kb on - strand, within ABCV34_RS01495 at 319.158 kb on - strand, within ABCV34_RS01495 at 319.268 kb on + strand at 319.268 kb on + strand at 319.268 kb on + strand at 319.268 kb on + strand at 319.268 kb on + strand at 319.268 kb on + strand at 319.268 kb on + strand at 319.269 kb on - strand at 319.269 kb on - strand at 319.269 kb on - strand at 319.269 kb on - strand at 319.269 kb on - strand at 319.269 kb on - strand at 319.612 kb on + strand, within ABCV34_RS01500 at 319.612 kb on + strand, within ABCV34_RS01500 at 319.612 kb on + strand, within ABCV34_RS01500 at 319.613 kb on - strand, within ABCV34_RS01500 at 319.613 kb on - strand, within ABCV34_RS01500 at 319.613 kb on - strand, within ABCV34_RS01500 at 319.613 kb on - strand, within ABCV34_RS01500 at 319.771 kb on + strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500 at 319.772 kb on - strand, within ABCV34_RS01500
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, pH5.5 remove 316,782 + -2.0 316,864 - -2.0 316,864 - -4.0 317,045 - ABCV34_RS01485 0.35 -1.0 317,058 + ABCV34_RS01485 0.37 -2.5 317,058 + ABCV34_RS01485 0.37 -3.9 317,058 + ABCV34_RS01485 0.37 -3.9 317,059 - ABCV34_RS01485 0.37 -2.0 317,059 - ABCV34_RS01485 0.37 -2.2 317,059 - ABCV34_RS01485 0.37 -3.9 317,059 - ABCV34_RS01485 0.37 -0.0 317,277 + ABCV34_RS01485 0.70 +1.0 317,277 + ABCV34_RS01485 0.70 -3.5 317,277 + ABCV34_RS01485 0.70 -3.2 317,278 - ABCV34_RS01485 0.70 -0.0 317,504 + -0.9 317,504 + -3.3 317,504 + -1.4 317,504 + -1.2 317,504 + +1.5 317,504 + -2.6 317,504 + -0.9 317,504 + -2.6 317,504 + -2.2 317,504 + -1.9 317,504 + -0.0 317,504 + -1.4 317,504 + -2.9 317,504 + -1.5 317,504 + +1.5 317,505 - -0.9 317,505 - -2.7 317,505 - -1.5 317,505 - -2.6 317,505 - -0.0 317,505 - -1.6 317,505 - -1.9 317,505 - -2.7 317,505 - -1.8 317,505 - -1.0 317,505 - -2.2 317,505 - -2.4 317,505 - -3.0 317,505 - -1.6 317,505 - -0.8 317,505 - -2.2 317,505 - -2.5 317,505 - -1.8 317,505 - -3.6 317,505 - -1.7 317,505 - -3.1 317,505 - -2.3 317,505 - -3.5 317,505 - -1.0 317,505 - -1.4 317,505 - -1.3 317,505 - -1.5 317,544 + -1.1 317,545 - -1.7 317,545 - -1.2 317,545 - -0.9 317,545 - -0.9 317,578 + -0.4 317,579 - -2.4 317,602 + -1.5 317,602 + -1.3 317,602 + -1.7 317,602 + -2.3 317,602 + -0.0 317,603 - -1.1 317,603 - -1.7 317,603 - -1.1 317,603 - -1.8 317,603 - -1.2 317,603 - -1.4 317,763 + ABCV34_RS01490 0.20 -1.0 317,764 - ABCV34_RS01490 0.20 -1.8 317,764 - ABCV34_RS01490 0.20 -1.6 317,806 + ABCV34_RS01490 0.24 -1.6 317,806 + ABCV34_RS01490 0.24 -1.6 317,806 + ABCV34_RS01490 0.24 -2.0 317,807 - ABCV34_RS01490 0.24 -0.0 317,807 - ABCV34_RS01490 0.24 -2.0 317,893 + ABCV34_RS01490 0.30 -1.2 317,893 + ABCV34_RS01490 0.30 -1.0 317,893 + ABCV34_RS01490 0.30 -0.8 317,893 + ABCV34_RS01490 0.30 -1.6 317,894 - ABCV34_RS01490 0.30 -0.0 317,894 - ABCV34_RS01490 0.30 -1.4 317,894 - ABCV34_RS01490 0.30 -0.9 317,894 - ABCV34_RS01490 0.30 -0.5 317,950 + ABCV34_RS01490 0.35 -0.0 317,950 + ABCV34_RS01490 0.35 -1.4 317,951 - ABCV34_RS01490 0.35 -1.0 317,951 - ABCV34_RS01490 0.35 -1.0 317,951 - ABCV34_RS01490 0.35 -2.0 317,951 - ABCV34_RS01490 0.35 -0.5 317,951 - ABCV34_RS01490 0.35 -1.3 318,079 + ABCV34_RS01490 0.45 -1.3 318,079 + ABCV34_RS01490 0.45 -0.5 318,079 + ABCV34_RS01490 0.45 -1.5 318,079 + ABCV34_RS01490 0.45 -1.3 318,079 + ABCV34_RS01490 0.45 -1.3 318,079 + ABCV34_RS01490 0.45 -0.7 318,080 - ABCV34_RS01490 0.45 -1.1 318,080 - ABCV34_RS01490 0.45 -1.5 318,080 - ABCV34_RS01490 0.45 -1.8 318,080 - ABCV34_RS01490 0.45 -1.3 318,080 - ABCV34_RS01490 0.45 +0.0 318,080 - ABCV34_RS01490 0.45 -1.5 318,080 - ABCV34_RS01490 0.45 -0.5 318,304 + ABCV34_RS01490 0.62 -2.0 318,305 - ABCV34_RS01490 0.62 -1.6 318,305 - ABCV34_RS01490 0.62 -1.1 318,305 - ABCV34_RS01490 0.62 -0.9 318,305 - ABCV34_RS01490 0.62 -2.2 318,317 + ABCV34_RS01490 0.63 -2.0 318,471 + ABCV34_RS01490 0.75 -0.0 318,471 + ABCV34_RS01490 0.75 -2.4 318,471 + ABCV34_RS01490 0.75 -0.5 318,471 + ABCV34_RS01490 0.75 -0.0 318,471 + ABCV34_RS01490 0.75 -1.3 318,471 + ABCV34_RS01490 0.75 -0.6 318,472 - ABCV34_RS01490 0.75 -0.5 318,472 - ABCV34_RS01490 0.75 -0.8 318,495 - ABCV34_RS01490 0.77 -0.7 318,495 - ABCV34_RS01490 0.77 -1.8 318,495 - ABCV34_RS01490 0.77 -0.2 318,495 - ABCV34_RS01490 0.77 -1.2 318,572 - ABCV34_RS01490 0.83 +0.3 318,983 + ABCV34_RS01495 0.39 -1.3 318,984 - ABCV34_RS01495 0.39 -0.9 318,984 - ABCV34_RS01495 0.39 -1.5 318,984 - ABCV34_RS01495 0.39 -0.6 319,157 + ABCV34_RS01495 0.73 -1.6 319,158 - ABCV34_RS01495 0.73 -0.8 319,158 - ABCV34_RS01495 0.73 -0.6 319,158 - ABCV34_RS01495 0.73 -1.3 319,158 - ABCV34_RS01495 0.73 -1.7 319,268 + +1.0 319,268 + -0.8 319,268 + -0.7 319,268 + -0.7 319,268 + -2.1 319,268 + -1.4 319,268 + -1.6 319,269 - -1.8 319,269 - -1.8 319,269 - -1.4 319,269 - +0.5 319,269 - -0.8 319,269 - -2.9 319,612 + ABCV34_RS01500 0.33 -0.0 319,612 + ABCV34_RS01500 0.33 +0.4 319,612 + ABCV34_RS01500 0.33 -0.5 319,613 - ABCV34_RS01500 0.33 -0.0 319,613 - ABCV34_RS01500 0.33 -1.7 319,613 - ABCV34_RS01500 0.33 +0.0 319,613 - ABCV34_RS01500 0.33 -2.0 319,771 + ABCV34_RS01500 0.49 -2.4 319,772 - ABCV34_RS01500 0.49 -1.3 319,772 - ABCV34_RS01500 0.49 +1.0 319,772 - ABCV34_RS01500 0.49 -2.4 319,772 - ABCV34_RS01500 0.49 -1.0 319,772 - ABCV34_RS01500 0.49 -2.5 319,772 - ABCV34_RS01500 0.49 -2.2 319,772 - ABCV34_RS01500 0.49 -0.6 319,772 - ABCV34_RS01500 0.49 -1.6 319,772 - ABCV34_RS01500 0.49 -0.0 319,772 - ABCV34_RS01500 0.49 -1.4
Or see this region's nucleotide sequence