Experiment: Anaerobic, pH5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00710 and ABCV34_RS00715 are separated by 43 nucleotides ABCV34_RS00715 and ABCV34_RS00720 are separated by 13 nucleotides ABCV34_RS00720 and ABCV34_RS00725 are separated by 101 nucleotides ABCV34_RS00725 and ABCV34_RS00730 overlap by 8 nucleotides
ABCV34_RS00710: ABCV34_RS00710 - VOC family protein, at 154,232 to 154,678
_RS00710
ABCV34_RS00715: ABCV34_RS00715 - MaoC/PaaZ C-terminal domain-containing protein, at 154,722 to 155,522
_RS00715
ABCV34_RS00720: ABCV34_RS00720 - alpha/beta hydrolase, at 155,536 to 156,321
_RS00720
ABCV34_RS00725: ABCV34_RS00725 - SDR family NAD(P)-dependent oxidoreductase, at 156,423 to 157,181
_RS00725
ABCV34_RS00730: ABCV34_RS00730 - amidase, at 157,174 to 158,541
_RS00730
Position (kb) 155
156
157 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.677 kb on - strand at 154.677 kb on - strand at 154.803 kb on + strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.848 kb on + strand, within ABCV34_RS00715 at 154.848 kb on + strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.932 kb on + strand, within ABCV34_RS00715 at 154.932 kb on + strand, within ABCV34_RS00715 at 154.932 kb on + strand, within ABCV34_RS00715 at 154.933 kb on - strand, within ABCV34_RS00715 at 155.003 kb on + strand, within ABCV34_RS00715 at 155.004 kb on - strand, within ABCV34_RS00715 at 155.004 kb on - strand, within ABCV34_RS00715 at 155.023 kb on + strand, within ABCV34_RS00715 at 155.024 kb on - strand, within ABCV34_RS00715 at 155.024 kb on - strand, within ABCV34_RS00715 at 155.034 kb on + strand, within ABCV34_RS00715 at 155.035 kb on - strand, within ABCV34_RS00715 at 155.035 kb on - strand, within ABCV34_RS00715 at 155.082 kb on + strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.097 kb on + strand, within ABCV34_RS00715 at 155.097 kb on + strand, within ABCV34_RS00715 at 155.097 kb on + strand, within ABCV34_RS00715 at 155.098 kb on - strand, within ABCV34_RS00715 at 155.098 kb on - strand, within ABCV34_RS00715 at 155.175 kb on + strand, within ABCV34_RS00715 at 155.175 kb on + strand, within ABCV34_RS00715 at 155.175 kb on + strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.223 kb on + strand, within ABCV34_RS00715 at 155.223 kb on + strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.513 kb on - strand at 155.513 kb on - strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.551 kb on - strand at 155.551 kb on - strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.574 kb on + strand at 155.575 kb on - strand at 155.634 kb on + strand, within ABCV34_RS00720 at 155.634 kb on + strand, within ABCV34_RS00720 at 155.634 kb on + strand, within ABCV34_RS00720 at 155.634 kb on + strand, within ABCV34_RS00720 at 155.635 kb on - strand, within ABCV34_RS00720 at 155.683 kb on + strand, within ABCV34_RS00720 at 155.683 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.918 kb on - strand, within ABCV34_RS00720 at 155.918 kb on - strand, within ABCV34_RS00720 at 155.918 kb on - strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.269 kb on + strand at 156.269 kb on + strand at 156.269 kb on + strand at 156.269 kb on + strand at 156.269 kb on + strand at 156.270 kb on - strand at 156.270 kb on - strand at 156.270 kb on - strand at 156.859 kb on - strand, within ABCV34_RS00725 at 156.888 kb on + strand, within ABCV34_RS00725 at 156.888 kb on + strand, within ABCV34_RS00725 at 156.889 kb on - strand, within ABCV34_RS00725 at 156.990 kb on + strand, within ABCV34_RS00725 at 156.990 kb on + strand, within ABCV34_RS00725 at 156.991 kb on - strand, within ABCV34_RS00725 at 156.991 kb on - strand, within ABCV34_RS00725 at 157.038 kb on + strand, within ABCV34_RS00725 at 157.128 kb on + strand at 157.128 kb on + strand at 157.129 kb on - strand at 157.129 kb on - strand at 157.129 kb on - strand at 157.146 kb on + strand at 157.146 kb on + strand at 157.146 kb on + strand at 157.146 kb on + strand at 157.147 kb on - strand at 157.147 kb on - strand at 157.222 kb on + strand at 157.222 kb on + strand at 157.222 kb on + strand at 157.222 kb on + strand at 157.223 kb on - strand at 157.223 kb on - strand at 157.234 kb on - strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, pH5.5 remove 154,562 + ABCV34_RS00710 0.74 +1.6 154,562 + ABCV34_RS00710 0.74 -3.0 154,562 + ABCV34_RS00710 0.74 -1.8 154,562 + ABCV34_RS00710 0.74 -2.8 154,562 + ABCV34_RS00710 0.74 -1.0 154,563 - ABCV34_RS00710 0.74 -1.5 154,563 - ABCV34_RS00710 0.74 -3.6 154,563 - ABCV34_RS00710 0.74 -1.7 154,563 - ABCV34_RS00710 0.74 -4.3 154,563 - ABCV34_RS00710 0.74 -0.5 154,563 - ABCV34_RS00710 0.74 -2.4 154,563 - ABCV34_RS00710 0.74 -1.9 154,563 - ABCV34_RS00710 0.74 -3.4 154,563 - ABCV34_RS00710 0.74 -2.2 154,563 - ABCV34_RS00710 0.74 -1.8 154,563 - ABCV34_RS00710 0.74 -0.0 154,563 - ABCV34_RS00710 0.74 -2.6 154,563 - ABCV34_RS00710 0.74 -4.8 154,563 - ABCV34_RS00710 0.74 -3.8 154,563 - ABCV34_RS00710 0.74 -2.5 154,577 + ABCV34_RS00710 0.77 -2.0 154,577 + ABCV34_RS00710 0.77 -3.8 154,577 + ABCV34_RS00710 0.77 -3.2 154,577 + ABCV34_RS00710 0.77 -3.4 154,578 - ABCV34_RS00710 0.77 -4.7 154,578 - ABCV34_RS00710 0.77 -3.3 154,578 - ABCV34_RS00710 0.77 -2.9 154,578 - ABCV34_RS00710 0.77 -1.8 154,578 - ABCV34_RS00710 0.77 -2.1 154,578 - ABCV34_RS00710 0.77 -3.0 154,578 - ABCV34_RS00710 0.77 -2.6 154,578 - ABCV34_RS00710 0.77 -2.6 154,578 - ABCV34_RS00710 0.77 -4.8 154,578 - ABCV34_RS00710 0.77 -1.0 154,677 - -2.4 154,677 - -2.6 154,803 + ABCV34_RS00715 0.10 -1.5 154,804 - ABCV34_RS00715 0.10 -3.3 154,804 - ABCV34_RS00715 0.10 +1.6 154,804 - ABCV34_RS00715 0.10 -2.8 154,804 - ABCV34_RS00715 0.10 -2.8 154,804 - ABCV34_RS00715 0.10 -2.0 154,848 + ABCV34_RS00715 0.16 -2.8 154,848 + ABCV34_RS00715 0.16 -0.0 154,849 - ABCV34_RS00715 0.16 -2.8 154,849 - ABCV34_RS00715 0.16 -2.8 154,849 - ABCV34_RS00715 0.16 -2.8 154,849 - ABCV34_RS00715 0.16 -2.6 154,932 + ABCV34_RS00715 0.26 -2.3 154,932 + ABCV34_RS00715 0.26 -2.2 154,932 + ABCV34_RS00715 0.26 -3.3 154,933 - ABCV34_RS00715 0.26 -1.7 155,003 + ABCV34_RS00715 0.35 -0.0 155,004 - ABCV34_RS00715 0.35 -1.7 155,004 - ABCV34_RS00715 0.35 -0.8 155,023 + ABCV34_RS00715 0.38 -0.0 155,024 - ABCV34_RS00715 0.38 -3.5 155,024 - ABCV34_RS00715 0.38 -2.1 155,034 + ABCV34_RS00715 0.39 -1.9 155,035 - ABCV34_RS00715 0.39 -3.9 155,035 - ABCV34_RS00715 0.39 -0.0 155,082 + ABCV34_RS00715 0.45 -0.0 155,083 - ABCV34_RS00715 0.45 -3.0 155,083 - ABCV34_RS00715 0.45 -0.0 155,083 - ABCV34_RS00715 0.45 -3.6 155,083 - ABCV34_RS00715 0.45 -2.6 155,097 + ABCV34_RS00715 0.47 -1.6 155,097 + ABCV34_RS00715 0.47 -2.5 155,097 + ABCV34_RS00715 0.47 -2.4 155,098 - ABCV34_RS00715 0.47 -2.6 155,098 - ABCV34_RS00715 0.47 -3.7 155,175 + ABCV34_RS00715 0.57 -2.6 155,175 + ABCV34_RS00715 0.57 -2.1 155,175 + ABCV34_RS00715 0.57 -1.8 155,176 - ABCV34_RS00715 0.57 -2.1 155,176 - ABCV34_RS00715 0.57 -4.0 155,176 - ABCV34_RS00715 0.57 -3.4 155,176 - ABCV34_RS00715 0.57 -2.8 155,176 - ABCV34_RS00715 0.57 -2.8 155,223 + ABCV34_RS00715 0.63 -3.4 155,223 + ABCV34_RS00715 0.63 +1.0 155,224 - ABCV34_RS00715 0.63 -1.5 155,224 - ABCV34_RS00715 0.63 -3.0 155,224 - ABCV34_RS00715 0.63 -1.6 155,224 - ABCV34_RS00715 0.63 -2.9 155,513 - +1.0 155,513 - -2.1 155,550 + -2.2 155,550 + -1.5 155,550 + -2.5 155,550 + -1.1 155,550 + -0.0 155,550 + -3.4 155,551 - -3.1 155,551 - -3.7 155,572 + -1.8 155,572 + -0.0 155,572 + -2.2 155,572 + -1.2 155,572 + -2.9 155,573 - -3.7 155,573 - +1.0 155,573 - -0.0 155,573 - -1.1 155,573 - -1.7 155,574 + -1.3 155,575 - -3.0 155,634 + ABCV34_RS00720 0.12 -3.3 155,634 + ABCV34_RS00720 0.12 -1.5 155,634 + ABCV34_RS00720 0.12 -3.6 155,634 + ABCV34_RS00720 0.12 -2.6 155,635 - ABCV34_RS00720 0.13 -1.8 155,683 + ABCV34_RS00720 0.19 -0.0 155,683 + ABCV34_RS00720 0.19 -1.9 155,917 + ABCV34_RS00720 0.48 -1.4 155,917 + ABCV34_RS00720 0.48 -2.6 155,917 + ABCV34_RS00720 0.48 -2.3 155,917 + ABCV34_RS00720 0.48 -3.3 155,918 - ABCV34_RS00720 0.49 -2.0 155,918 - ABCV34_RS00720 0.49 -0.0 155,918 - ABCV34_RS00720 0.49 -2.1 156,070 + ABCV34_RS00720 0.68 -2.3 156,070 + ABCV34_RS00720 0.68 -2.0 156,070 + ABCV34_RS00720 0.68 -2.0 156,070 + ABCV34_RS00720 0.68 -3.7 156,070 + ABCV34_RS00720 0.68 -4.6 156,071 - ABCV34_RS00720 0.68 -1.3 156,071 - ABCV34_RS00720 0.68 -1.6 156,071 - ABCV34_RS00720 0.68 -2.4 156,071 - ABCV34_RS00720 0.68 -1.0 156,269 + -2.7 156,269 + -1.5 156,269 + -1.9 156,269 + -2.7 156,269 + -2.9 156,270 - -2.4 156,270 - -2.0 156,270 - -2.4 156,859 - ABCV34_RS00725 0.57 -2.9 156,888 + ABCV34_RS00725 0.61 -3.0 156,888 + ABCV34_RS00725 0.61 -3.7 156,889 - ABCV34_RS00725 0.61 -0.0 156,990 + ABCV34_RS00725 0.75 -2.4 156,990 + ABCV34_RS00725 0.75 -3.5 156,991 - ABCV34_RS00725 0.75 -3.2 156,991 - ABCV34_RS00725 0.75 -2.6 157,038 + ABCV34_RS00725 0.81 -2.7 157,128 + -1.7 157,128 + -2.3 157,129 - -0.0 157,129 - -3.6 157,129 - -2.6 157,146 + -1.8 157,146 + -4.4 157,146 + -3.8 157,146 + -3.2 157,147 - -1.0 157,147 - -2.7 157,222 + -0.0 157,222 + -1.3 157,222 + -2.0 157,222 + -2.3 157,223 - -2.0 157,223 - -0.0 157,234 - -2.8 157,264 + -0.7 157,264 + -2.8 157,264 + -3.4 157,264 + -3.4 157,264 + -2.8 157,264 + +0.6 157,264 + -2.3 157,265 - -0.0 157,265 - -2.9 157,265 - -0.0 157,265 - -2.0 157,265 - -1.5 157,265 - -2.0 157,265 - -1.5 157,265 - -1.8 157,265 - -3.2 157,265 - -2.5 157,306 + -1.0 157,306 + -3.9 157,306 + -3.4 157,306 + -3.6 157,306 + -2.4 157,307 - -1.5 157,307 - -2.4 157,307 - -0.0 157,307 - -0.0 157,307 - -4.2 157,307 - -2.5 157,307 - -0.0 157,307 - -2.5 157,307 - -3.1 157,307 - -2.4
Or see this region's nucleotide sequence