Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04594 and MPMX20_04595 are separated by 387 nucleotides MPMX20_04595 and MPMX20_04596 are separated by 185 nucleotides
MPMX20_04594: MPMX20_04594 - GTP-binding protein TypA/BipA, at 4,806,979 to 4,808,802
_04594
MPMX20_04595: MPMX20_04595 - Glutamine synthetase, at 4,809,190 to 4,810,599
_04595
MPMX20_04596: MPMX20_04596 - Sensory histidine kinase/phosphatase NtrB, at 4,810,785 to 4,811,834
_04596
Position (kb)
4809
4810
4811 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4808.492 kb on - strand, within MPMX20_04594 at 4808.864 kb on - strand at 4808.900 kb on - strand at 4808.925 kb on - strand at 4808.987 kb on + strand at 4808.987 kb on + strand at 4808.995 kb on - strand at 4808.995 kb on - strand at 4809.030 kb on + strand at 4809.038 kb on - strand at 4809.038 kb on - strand at 4809.043 kb on - strand at 4809.125 kb on - strand at 4809.127 kb on + strand at 4809.127 kb on + strand at 4809.247 kb on - strand at 4809.252 kb on - strand at 4809.567 kb on + strand, within MPMX20_04595 at 4809.567 kb on + strand, within MPMX20_04595 at 4809.570 kb on - strand, within MPMX20_04595 at 4809.773 kb on - strand, within MPMX20_04595 at 4809.923 kb on + strand, within MPMX20_04595 at 4809.924 kb on - strand, within MPMX20_04595 at 4810.133 kb on - strand, within MPMX20_04595 at 4810.584 kb on + strand at 4810.592 kb on - strand at 4810.666 kb on + strand at 4810.774 kb on - strand at 4810.776 kb on - strand at 4810.776 kb on - strand at 4810.786 kb on - strand at 4810.788 kb on - strand at 4810.802 kb on + strand at 4810.802 kb on + strand at 4810.802 kb on + strand at 4810.802 kb on + strand at 4810.802 kb on + strand at 4810.820 kb on - strand at 4810.840 kb on + strand at 4810.925 kb on + strand, within MPMX20_04596 at 4810.975 kb on + strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.033 kb on + strand, within MPMX20_04596 at 4811.041 kb on - strand, within MPMX20_04596 at 4811.041 kb on - strand, within MPMX20_04596 at 4811.089 kb on + strand, within MPMX20_04596 at 4811.089 kb on + strand, within MPMX20_04596 at 4811.097 kb on - strand, within MPMX20_04596 at 4811.191 kb on - strand, within MPMX20_04596 at 4811.231 kb on - strand, within MPMX20_04596 at 4811.261 kb on + strand, within MPMX20_04596 at 4811.261 kb on + strand, within MPMX20_04596 at 4811.280 kb on + strand, within MPMX20_04596 at 4811.280 kb on + strand, within MPMX20_04596 at 4811.280 kb on + strand, within MPMX20_04596 at 4811.282 kb on + strand, within MPMX20_04596 at 4811.285 kb on + strand, within MPMX20_04596 at 4811.344 kb on + strand, within MPMX20_04596 at 4811.344 kb on + strand, within MPMX20_04596 at 4811.352 kb on - strand, within MPMX20_04596 at 4811.352 kb on - strand, within MPMX20_04596 at 4811.352 kb on - strand, within MPMX20_04596 at 4811.367 kb on - strand, within MPMX20_04596 at 4811.434 kb on + strand, within MPMX20_04596 at 4811.442 kb on - strand, within MPMX20_04596 at 4811.485 kb on + strand, within MPMX20_04596 at 4811.581 kb on + strand, within MPMX20_04596 at 4811.583 kb on - strand, within MPMX20_04596 at 4811.598 kb on - strand, within MPMX20_04596
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 4,808,492 - MPMX20_04594 0.83 -1.2 4,808,864 - +0.9 4,808,900 - -0.6 4,808,925 - -0.4 4,808,987 + +0.1 4,808,987 + +1.8 4,808,995 - +0.3 4,808,995 - +0.4 4,809,030 + +0.0 4,809,038 - -0.8 4,809,038 - -0.6 4,809,043 - -0.5 4,809,125 - -0.2 4,809,127 + -1.5 4,809,127 + +1.7 4,809,247 - -2.0 4,809,252 - +2.2 4,809,567 + MPMX20_04595 0.27 -1.0 4,809,567 + MPMX20_04595 0.27 -0.8 4,809,570 - MPMX20_04595 0.27 -0.5 4,809,773 - MPMX20_04595 0.41 +0.8 4,809,923 + MPMX20_04595 0.52 -0.8 4,809,924 - MPMX20_04595 0.52 -0.2 4,810,133 - MPMX20_04595 0.67 -0.8 4,810,584 + +0.8 4,810,592 - -1.5 4,810,666 + +0.4 4,810,774 - +0.3 4,810,776 - +0.4 4,810,776 - +0.8 4,810,786 - +0.2 4,810,788 - -1.6 4,810,802 + +1.4 4,810,802 + -0.3 4,810,802 + +0.1 4,810,802 + -0.4 4,810,802 + -2.8 4,810,820 - -1.4 4,810,840 + +1.8 4,810,925 + MPMX20_04596 0.13 +1.8 4,810,975 + MPMX20_04596 0.18 +3.4 4,811,009 - MPMX20_04596 0.21 -1.2 4,811,009 - MPMX20_04596 0.21 -0.4 4,811,009 - MPMX20_04596 0.21 +1.2 4,811,009 - MPMX20_04596 0.21 -0.2 4,811,009 - MPMX20_04596 0.21 -0.5 4,811,009 - MPMX20_04596 0.21 +0.2 4,811,033 + MPMX20_04596 0.24 -0.4 4,811,041 - MPMX20_04596 0.24 +0.0 4,811,041 - MPMX20_04596 0.24 +0.8 4,811,089 + MPMX20_04596 0.29 +1.8 4,811,089 + MPMX20_04596 0.29 -0.4 4,811,097 - MPMX20_04596 0.30 -1.9 4,811,191 - MPMX20_04596 0.39 -0.3 4,811,231 - MPMX20_04596 0.42 -0.3 4,811,261 + MPMX20_04596 0.45 -0.4 4,811,261 + MPMX20_04596 0.45 +0.2 4,811,280 + MPMX20_04596 0.47 -1.9 4,811,280 + MPMX20_04596 0.47 -0.4 4,811,280 + MPMX20_04596 0.47 -0.4 4,811,282 + MPMX20_04596 0.47 -0.1 4,811,285 + MPMX20_04596 0.48 -0.6 4,811,344 + MPMX20_04596 0.53 +0.5 4,811,344 + MPMX20_04596 0.53 +1.1 4,811,352 - MPMX20_04596 0.54 +0.1 4,811,352 - MPMX20_04596 0.54 -1.0 4,811,352 - MPMX20_04596 0.54 -1.1 4,811,367 - MPMX20_04596 0.55 +0.1 4,811,434 + MPMX20_04596 0.62 +0.3 4,811,442 - MPMX20_04596 0.63 -1.0 4,811,485 + MPMX20_04596 0.67 -1.5 4,811,581 + MPMX20_04596 0.76 +2.1 4,811,583 - MPMX20_04596 0.76 -1.8 4,811,598 - MPMX20_04596 0.77 +1.4
Or see this region's nucleotide sequence