Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04595

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04594 and MPMX20_04595 are separated by 387 nucleotidesMPMX20_04595 and MPMX20_04596 are separated by 185 nucleotides MPMX20_04594: MPMX20_04594 - GTP-binding protein TypA/BipA, at 4,806,979 to 4,808,802 _04594 MPMX20_04595: MPMX20_04595 - Glutamine synthetase, at 4,809,190 to 4,810,599 _04595 MPMX20_04596: MPMX20_04596 - Sensory histidine kinase/phosphatase NtrB, at 4,810,785 to 4,811,834 _04596 Position (kb) 4809 4810 4811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4808.492 kb on - strand, within MPMX20_04594at 4808.864 kb on - strandat 4808.900 kb on - strandat 4808.925 kb on - strandat 4808.987 kb on + strandat 4808.987 kb on + strandat 4808.995 kb on - strandat 4808.995 kb on - strandat 4809.030 kb on + strandat 4809.038 kb on - strandat 4809.038 kb on - strandat 4809.043 kb on - strandat 4809.125 kb on - strandat 4809.127 kb on + strandat 4809.127 kb on + strandat 4809.247 kb on - strandat 4809.252 kb on - strandat 4809.567 kb on + strand, within MPMX20_04595at 4809.567 kb on + strand, within MPMX20_04595at 4809.570 kb on - strand, within MPMX20_04595at 4809.773 kb on - strand, within MPMX20_04595at 4809.923 kb on + strand, within MPMX20_04595at 4809.924 kb on - strand, within MPMX20_04595at 4810.133 kb on - strand, within MPMX20_04595at 4810.584 kb on + strandat 4810.592 kb on - strandat 4810.666 kb on + strandat 4810.774 kb on - strandat 4810.776 kb on - strandat 4810.776 kb on - strandat 4810.786 kb on - strandat 4810.788 kb on - strandat 4810.802 kb on + strandat 4810.802 kb on + strandat 4810.802 kb on + strandat 4810.802 kb on + strandat 4810.802 kb on + strandat 4810.820 kb on - strandat 4810.840 kb on + strandat 4810.925 kb on + strand, within MPMX20_04596at 4810.975 kb on + strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.033 kb on + strand, within MPMX20_04596at 4811.041 kb on - strand, within MPMX20_04596at 4811.041 kb on - strand, within MPMX20_04596at 4811.089 kb on + strand, within MPMX20_04596at 4811.089 kb on + strand, within MPMX20_04596at 4811.097 kb on - strand, within MPMX20_04596at 4811.191 kb on - strand, within MPMX20_04596at 4811.231 kb on - strand, within MPMX20_04596at 4811.261 kb on + strand, within MPMX20_04596at 4811.261 kb on + strand, within MPMX20_04596at 4811.280 kb on + strand, within MPMX20_04596at 4811.280 kb on + strand, within MPMX20_04596at 4811.280 kb on + strand, within MPMX20_04596at 4811.282 kb on + strand, within MPMX20_04596at 4811.285 kb on + strand, within MPMX20_04596at 4811.344 kb on + strand, within MPMX20_04596at 4811.344 kb on + strand, within MPMX20_04596at 4811.352 kb on - strand, within MPMX20_04596at 4811.352 kb on - strand, within MPMX20_04596at 4811.352 kb on - strand, within MPMX20_04596at 4811.367 kb on - strand, within MPMX20_04596at 4811.434 kb on + strand, within MPMX20_04596at 4811.442 kb on - strand, within MPMX20_04596at 4811.485 kb on + strand, within MPMX20_04596at 4811.581 kb on + strand, within MPMX20_04596at 4811.583 kb on - strand, within MPMX20_04596at 4811.598 kb on - strand, within MPMX20_04596

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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4,808,492 - MPMX20_04594 0.83 -1.2
4,808,864 - +0.9
4,808,900 - -0.6
4,808,925 - -0.4
4,808,987 + +0.1
4,808,987 + +1.8
4,808,995 - +0.3
4,808,995 - +0.4
4,809,030 + +0.0
4,809,038 - -0.8
4,809,038 - -0.6
4,809,043 - -0.5
4,809,125 - -0.2
4,809,127 + -1.5
4,809,127 + +1.7
4,809,247 - -2.0
4,809,252 - +2.2
4,809,567 + MPMX20_04595 0.27 -1.0
4,809,567 + MPMX20_04595 0.27 -0.8
4,809,570 - MPMX20_04595 0.27 -0.5
4,809,773 - MPMX20_04595 0.41 +0.8
4,809,923 + MPMX20_04595 0.52 -0.8
4,809,924 - MPMX20_04595 0.52 -0.2
4,810,133 - MPMX20_04595 0.67 -0.8
4,810,584 + +0.8
4,810,592 - -1.5
4,810,666 + +0.4
4,810,774 - +0.3
4,810,776 - +0.4
4,810,776 - +0.8
4,810,786 - +0.2
4,810,788 - -1.6
4,810,802 + +1.4
4,810,802 + -0.3
4,810,802 + +0.1
4,810,802 + -0.4
4,810,802 + -2.8
4,810,820 - -1.4
4,810,840 + +1.8
4,810,925 + MPMX20_04596 0.13 +1.8
4,810,975 + MPMX20_04596 0.18 +3.4
4,811,009 - MPMX20_04596 0.21 -1.2
4,811,009 - MPMX20_04596 0.21 -0.4
4,811,009 - MPMX20_04596 0.21 +1.2
4,811,009 - MPMX20_04596 0.21 -0.2
4,811,009 - MPMX20_04596 0.21 -0.5
4,811,009 - MPMX20_04596 0.21 +0.2
4,811,033 + MPMX20_04596 0.24 -0.4
4,811,041 - MPMX20_04596 0.24 +0.0
4,811,041 - MPMX20_04596 0.24 +0.8
4,811,089 + MPMX20_04596 0.29 +1.8
4,811,089 + MPMX20_04596 0.29 -0.4
4,811,097 - MPMX20_04596 0.30 -1.9
4,811,191 - MPMX20_04596 0.39 -0.3
4,811,231 - MPMX20_04596 0.42 -0.3
4,811,261 + MPMX20_04596 0.45 -0.4
4,811,261 + MPMX20_04596 0.45 +0.2
4,811,280 + MPMX20_04596 0.47 -1.9
4,811,280 + MPMX20_04596 0.47 -0.4
4,811,280 + MPMX20_04596 0.47 -0.4
4,811,282 + MPMX20_04596 0.47 -0.1
4,811,285 + MPMX20_04596 0.48 -0.6
4,811,344 + MPMX20_04596 0.53 +0.5
4,811,344 + MPMX20_04596 0.53 +1.1
4,811,352 - MPMX20_04596 0.54 +0.1
4,811,352 - MPMX20_04596 0.54 -1.0
4,811,352 - MPMX20_04596 0.54 -1.1
4,811,367 - MPMX20_04596 0.55 +0.1
4,811,434 + MPMX20_04596 0.62 +0.3
4,811,442 - MPMX20_04596 0.63 -1.0
4,811,485 + MPMX20_04596 0.67 -1.5
4,811,581 + MPMX20_04596 0.76 +2.1
4,811,583 - MPMX20_04596 0.76 -1.8
4,811,598 - MPMX20_04596 0.77 +1.4

Or see this region's nucleotide sequence