Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04558

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04557 and MPMX20_04558 are separated by 54 nucleotidesMPMX20_04558 and MPMX20_04559 are separated by 70 nucleotidesMPMX20_04559 and MPMX20_04560 are separated by 289 nucleotides MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897 _04557 MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626 _04558 MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317 _04559 MPMX20_04560: MPMX20_04560 - L-rhamnose-proton symporter, at 4,771,607 to 4,772,641 _04560 Position (kb) 4769 4770 4771Strain fitness (log2 ratio) -2 -1 0 1 2at 4769.129 kb on + strand, within MPMX20_04557at 4769.223 kb on - strand, within MPMX20_04557at 4769.297 kb on + strand, within MPMX20_04557at 4769.305 kb on - strand, within MPMX20_04557at 4769.378 kb on - strand, within MPMX20_04557at 4769.473 kb on - strand, within MPMX20_04557at 4769.569 kb on - strand, within MPMX20_04557at 4769.627 kb on + strand, within MPMX20_04557at 4769.627 kb on + strand, within MPMX20_04557at 4769.635 kb on - strand, within MPMX20_04557at 4769.635 kb on - strand, within MPMX20_04557at 4769.686 kb on + strand, within MPMX20_04557at 4769.686 kb on + strand, within MPMX20_04557at 4769.694 kb on - strand, within MPMX20_04557at 4769.698 kb on + strand, within MPMX20_04557at 4769.698 kb on + strand, within MPMX20_04557at 4769.723 kb on - strand, within MPMX20_04557at 4769.745 kb on - strand, within MPMX20_04557at 4769.770 kb on + strandat 4769.783 kb on - strandat 4769.861 kb on - strandat 4769.868 kb on - strandat 4769.940 kb on + strandat 4770.116 kb on - strand, within MPMX20_04558at 4770.127 kb on - strand, within MPMX20_04558at 4770.147 kb on - strand, within MPMX20_04558at 4770.511 kb on + strand, within MPMX20_04558at 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.594 kb on - strandat 4770.594 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.634 kb on - strandat 4770.736 kb on + strandat 4770.744 kb on - strandat 4770.820 kb on + strand, within MPMX20_04559at 4770.928 kb on + strand, within MPMX20_04559at 4771.035 kb on + strand, within MPMX20_04559at 4771.058 kb on + strand, within MPMX20_04559at 4771.096 kb on - strand, within MPMX20_04559at 4771.104 kb on - strand, within MPMX20_04559at 4771.134 kb on - strand, within MPMX20_04559at 4771.207 kb on + strand, within MPMX20_04559at 4771.216 kb on + strand, within MPMX20_04559at 4771.226 kb on + strand, within MPMX20_04559at 4771.297 kb on + strandat 4771.305 kb on + strandat 4771.313 kb on + strandat 4771.313 kb on - strandat 4771.313 kb on - strandat 4771.321 kb on - strandat 4771.348 kb on - strandat 4771.349 kb on + strandat 4771.350 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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4,769,129 + MPMX20_04557 0.44 +1.8
4,769,223 - MPMX20_04557 0.51 -0.7
4,769,297 + MPMX20_04557 0.56 -0.5
4,769,305 - MPMX20_04557 0.57 +0.7
4,769,378 - MPMX20_04557 0.62 +0.3
4,769,473 - MPMX20_04557 0.69 -0.1
4,769,569 - MPMX20_04557 0.76 +0.1
4,769,627 + MPMX20_04557 0.80 -0.2
4,769,627 + MPMX20_04557 0.80 +0.5
4,769,635 - MPMX20_04557 0.81 -0.0
4,769,635 - MPMX20_04557 0.81 -0.8
4,769,686 + MPMX20_04557 0.85 +0.2
4,769,686 + MPMX20_04557 0.85 +0.1
4,769,694 - MPMX20_04557 0.85 -1.1
4,769,698 + MPMX20_04557 0.85 +0.0
4,769,698 + MPMX20_04557 0.85 -0.1
4,769,723 - MPMX20_04557 0.87 -0.5
4,769,745 - MPMX20_04557 0.89 -0.0
4,769,770 + -0.2
4,769,783 - -0.2
4,769,861 - -0.6
4,769,868 - +0.8
4,769,940 + -0.7
4,770,116 - MPMX20_04558 0.24 +0.2
4,770,127 - MPMX20_04558 0.26 -1.0
4,770,147 - MPMX20_04558 0.29 -0.7
4,770,511 + MPMX20_04558 0.83 -0.2
4,770,587 + +1.7
4,770,587 + +0.7
4,770,587 + +0.2
4,770,587 + -0.7
4,770,594 - -0.3
4,770,594 - -0.4
4,770,595 - +1.4
4,770,595 - +1.8
4,770,595 - -0.2
4,770,595 - -1.3
4,770,595 - -0.2
4,770,634 - +0.0
4,770,736 + +1.2
4,770,744 - +1.0
4,770,820 + MPMX20_04559 0.20 +1.0
4,770,928 + MPMX20_04559 0.37 +0.8
4,771,035 + MPMX20_04559 0.54 +0.0
4,771,058 + MPMX20_04559 0.58 -1.1
4,771,096 - MPMX20_04559 0.64 -0.3
4,771,104 - MPMX20_04559 0.66 -1.5
4,771,134 - MPMX20_04559 0.70 +0.2
4,771,207 + MPMX20_04559 0.82 +0.4
4,771,216 + MPMX20_04559 0.84 +0.6
4,771,226 + MPMX20_04559 0.85 -1.2
4,771,297 + -1.8
4,771,305 + -0.1
4,771,313 + -1.9
4,771,313 - +0.4
4,771,313 - -1.7
4,771,321 - +0.0
4,771,348 - -0.0
4,771,349 + -1.3
4,771,350 - +0.2
4,771,529 - -0.5
4,771,529 - +0.3
4,771,529 - -0.8
4,771,529 - +0.3
4,771,565 + +0.2

Or see this region's nucleotide sequence