Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04557 and MPMX20_04558 are separated by 54 nucleotides MPMX20_04558 and MPMX20_04559 are separated by 70 nucleotides MPMX20_04559 and MPMX20_04560 are separated by 289 nucleotides
MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897
_04557
MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626
_04558
MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317
_04559
MPMX20_04560: MPMX20_04560 - L-rhamnose-proton symporter, at 4,771,607 to 4,772,641
_04560
Position (kb)
4769
4770
4771 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4769.129 kb on + strand, within MPMX20_04557 at 4769.223 kb on - strand, within MPMX20_04557 at 4769.297 kb on + strand, within MPMX20_04557 at 4769.305 kb on - strand, within MPMX20_04557 at 4769.378 kb on - strand, within MPMX20_04557 at 4769.473 kb on - strand, within MPMX20_04557 at 4769.569 kb on - strand, within MPMX20_04557 at 4769.627 kb on + strand, within MPMX20_04557 at 4769.627 kb on + strand, within MPMX20_04557 at 4769.635 kb on - strand, within MPMX20_04557 at 4769.635 kb on - strand, within MPMX20_04557 at 4769.686 kb on + strand, within MPMX20_04557 at 4769.686 kb on + strand, within MPMX20_04557 at 4769.694 kb on - strand, within MPMX20_04557 at 4769.698 kb on + strand, within MPMX20_04557 at 4769.698 kb on + strand, within MPMX20_04557 at 4769.723 kb on - strand, within MPMX20_04557 at 4769.745 kb on - strand, within MPMX20_04557 at 4769.770 kb on + strand at 4769.783 kb on - strand at 4769.861 kb on - strand at 4769.868 kb on - strand at 4769.940 kb on + strand at 4770.116 kb on - strand, within MPMX20_04558 at 4770.127 kb on - strand, within MPMX20_04558 at 4770.147 kb on - strand, within MPMX20_04558 at 4770.511 kb on + strand, within MPMX20_04558 at 4770.587 kb on + strand at 4770.587 kb on + strand at 4770.587 kb on + strand at 4770.587 kb on + strand at 4770.594 kb on - strand at 4770.594 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.634 kb on - strand at 4770.736 kb on + strand at 4770.744 kb on - strand at 4770.820 kb on + strand, within MPMX20_04559 at 4770.928 kb on + strand, within MPMX20_04559 at 4771.035 kb on + strand, within MPMX20_04559 at 4771.058 kb on + strand, within MPMX20_04559 at 4771.096 kb on - strand, within MPMX20_04559 at 4771.104 kb on - strand, within MPMX20_04559 at 4771.134 kb on - strand, within MPMX20_04559 at 4771.207 kb on + strand, within MPMX20_04559 at 4771.216 kb on + strand, within MPMX20_04559 at 4771.226 kb on + strand, within MPMX20_04559 at 4771.297 kb on + strand at 4771.305 kb on + strand at 4771.313 kb on + strand at 4771.313 kb on - strand at 4771.313 kb on - strand at 4771.321 kb on - strand at 4771.348 kb on - strand at 4771.349 kb on + strand at 4771.350 kb on - strand at 4771.529 kb on - strand at 4771.529 kb on - strand at 4771.529 kb on - strand at 4771.529 kb on - strand at 4771.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 4,769,129 + MPMX20_04557 0.44 +1.8 4,769,223 - MPMX20_04557 0.51 -0.7 4,769,297 + MPMX20_04557 0.56 -0.5 4,769,305 - MPMX20_04557 0.57 +0.7 4,769,378 - MPMX20_04557 0.62 +0.3 4,769,473 - MPMX20_04557 0.69 -0.1 4,769,569 - MPMX20_04557 0.76 +0.1 4,769,627 + MPMX20_04557 0.80 -0.2 4,769,627 + MPMX20_04557 0.80 +0.5 4,769,635 - MPMX20_04557 0.81 -0.0 4,769,635 - MPMX20_04557 0.81 -0.8 4,769,686 + MPMX20_04557 0.85 +0.2 4,769,686 + MPMX20_04557 0.85 +0.1 4,769,694 - MPMX20_04557 0.85 -1.1 4,769,698 + MPMX20_04557 0.85 +0.0 4,769,698 + MPMX20_04557 0.85 -0.1 4,769,723 - MPMX20_04557 0.87 -0.5 4,769,745 - MPMX20_04557 0.89 -0.0 4,769,770 + -0.2 4,769,783 - -0.2 4,769,861 - -0.6 4,769,868 - +0.8 4,769,940 + -0.7 4,770,116 - MPMX20_04558 0.24 +0.2 4,770,127 - MPMX20_04558 0.26 -1.0 4,770,147 - MPMX20_04558 0.29 -0.7 4,770,511 + MPMX20_04558 0.83 -0.2 4,770,587 + +1.7 4,770,587 + +0.7 4,770,587 + +0.2 4,770,587 + -0.7 4,770,594 - -0.3 4,770,594 - -0.4 4,770,595 - +1.4 4,770,595 - +1.8 4,770,595 - -0.2 4,770,595 - -1.3 4,770,595 - -0.2 4,770,634 - +0.0 4,770,736 + +1.2 4,770,744 - +1.0 4,770,820 + MPMX20_04559 0.20 +1.0 4,770,928 + MPMX20_04559 0.37 +0.8 4,771,035 + MPMX20_04559 0.54 +0.0 4,771,058 + MPMX20_04559 0.58 -1.1 4,771,096 - MPMX20_04559 0.64 -0.3 4,771,104 - MPMX20_04559 0.66 -1.5 4,771,134 - MPMX20_04559 0.70 +0.2 4,771,207 + MPMX20_04559 0.82 +0.4 4,771,216 + MPMX20_04559 0.84 +0.6 4,771,226 + MPMX20_04559 0.85 -1.2 4,771,297 + -1.8 4,771,305 + -0.1 4,771,313 + -1.9 4,771,313 - +0.4 4,771,313 - -1.7 4,771,321 - +0.0 4,771,348 - -0.0 4,771,349 + -1.3 4,771,350 - +0.2 4,771,529 - -0.5 4,771,529 - +0.3 4,771,529 - -0.8 4,771,529 - +0.3 4,771,565 + +0.2
Or see this region's nucleotide sequence