Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04466

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04464 and MPMX20_04465 overlap by 1 nucleotidesMPMX20_04465 and MPMX20_04466 overlap by 4 nucleotidesMPMX20_04466 and MPMX20_04467 overlap by 4 nucleotides MPMX20_04464: MPMX20_04464 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,668,832 to 4,669,548 _04464 MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450 _04465 MPMX20_04466: MPMX20_04466 - hypothetical protein, at 4,670,447 to 4,671,154 _04466 MPMX20_04467: MPMX20_04467 - Diaminopimelate epimerase, at 4,671,151 to 4,671,975 _04467 Position (kb) 4670 4671 4672Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4669.457 kb on + strand, within MPMX20_04464at 4669.470 kb on - strand, within MPMX20_04464at 4669.508 kb on - strandat 4669.508 kb on - strandat 4669.508 kb on - strandat 4669.520 kb on - strandat 4669.534 kb on - strandat 4669.618 kb on + strandat 4669.618 kb on + strandat 4669.626 kb on - strandat 4669.650 kb on + strand, within MPMX20_04465at 4669.658 kb on - strand, within MPMX20_04465at 4669.743 kb on + strand, within MPMX20_04465at 4669.769 kb on - strand, within MPMX20_04465at 4669.769 kb on - strand, within MPMX20_04465at 4669.774 kb on + strand, within MPMX20_04465at 4669.787 kb on - strand, within MPMX20_04465at 4669.851 kb on - strand, within MPMX20_04465at 4669.862 kb on + strand, within MPMX20_04465at 4669.862 kb on + strand, within MPMX20_04465at 4669.867 kb on + strand, within MPMX20_04465at 4669.870 kb on - strand, within MPMX20_04465at 4669.875 kb on - strand, within MPMX20_04465at 4669.927 kb on + strand, within MPMX20_04465at 4669.999 kb on - strand, within MPMX20_04465at 4669.999 kb on - strand, within MPMX20_04465at 4669.999 kb on - strand, within MPMX20_04465at 4670.022 kb on - strand, within MPMX20_04465at 4670.022 kb on - strand, within MPMX20_04465at 4670.040 kb on + strand, within MPMX20_04465at 4670.136 kb on - strand, within MPMX20_04465at 4670.169 kb on - strand, within MPMX20_04465at 4670.180 kb on - strand, within MPMX20_04465at 4670.197 kb on + strand, within MPMX20_04465at 4670.240 kb on - strand, within MPMX20_04465at 4670.371 kb on + strandat 4670.385 kb on - strandat 4670.404 kb on - strandat 4670.404 kb on - strandat 4670.404 kb on - strandat 4670.481 kb on + strandat 4670.493 kb on - strandat 4670.518 kb on - strand, within MPMX20_04466at 4670.535 kb on - strand, within MPMX20_04466at 4670.561 kb on + strand, within MPMX20_04466at 4670.652 kb on - strand, within MPMX20_04466at 4670.662 kb on + strand, within MPMX20_04466at 4670.746 kb on - strand, within MPMX20_04466at 4670.757 kb on - strand, within MPMX20_04466at 4670.788 kb on + strand, within MPMX20_04466at 4670.852 kb on + strand, within MPMX20_04466at 4671.009 kb on - strand, within MPMX20_04466at 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.202 kb on - strandat 4671.202 kb on - strandat 4671.211 kb on + strandat 4671.219 kb on - strandat 4671.280 kb on + strand, within MPMX20_04467at 4671.288 kb on - strand, within MPMX20_04467at 4671.288 kb on - strand, within MPMX20_04467at 4671.288 kb on - strand, within MPMX20_04467at 4671.462 kb on - strand, within MPMX20_04467at 4671.474 kb on + strand, within MPMX20_04467at 4671.503 kb on + strand, within MPMX20_04467at 4671.526 kb on + strand, within MPMX20_04467at 4671.534 kb on - strand, within MPMX20_04467at 4671.534 kb on - strand, within MPMX20_04467at 4671.595 kb on + strand, within MPMX20_04467at 4671.596 kb on + strand, within MPMX20_04467at 4671.611 kb on - strand, within MPMX20_04467at 4671.653 kb on + strand, within MPMX20_04467at 4671.740 kb on - strand, within MPMX20_04467at 4671.776 kb on - strand, within MPMX20_04467at 4671.776 kb on - strand, within MPMX20_04467at 4671.841 kb on - strand, within MPMX20_04467at 4671.866 kb on - strand, within MPMX20_04467at 4671.891 kb on + strand, within MPMX20_04467at 4672.073 kb on + strandat 4672.081 kb on - strandat 4672.081 kb on - strandat 4672.093 kb on + strandat 4672.101 kb on - strandat 4672.101 kb on - strandat 4672.141 kb on + strandat 4672.151 kb on + strandat 4672.151 kb on + strandat 4672.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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4,669,457 + MPMX20_04464 0.87 +0.5
4,669,470 - MPMX20_04464 0.89 -1.8
4,669,508 - -1.0
4,669,508 - -0.2
4,669,508 - +0.4
4,669,520 - -0.4
4,669,534 - +1.1
4,669,618 + -2.6
4,669,618 + -1.8
4,669,626 - -1.4
4,669,650 + MPMX20_04465 0.11 -1.5
4,669,658 - MPMX20_04465 0.12 -1.2
4,669,743 + MPMX20_04465 0.22 -2.3
4,669,769 - MPMX20_04465 0.24 -0.9
4,669,769 - MPMX20_04465 0.24 -2.2
4,669,774 + MPMX20_04465 0.25 -1.4
4,669,787 - MPMX20_04465 0.26 -1.2
4,669,851 - MPMX20_04465 0.34 +0.8
4,669,862 + MPMX20_04465 0.35 -1.9
4,669,862 + MPMX20_04465 0.35 +0.2
4,669,867 + MPMX20_04465 0.35 +3.1
4,669,870 - MPMX20_04465 0.36 -0.2
4,669,875 - MPMX20_04465 0.36 -2.0
4,669,927 + MPMX20_04465 0.42 -1.0
4,669,999 - MPMX20_04465 0.50 +0.2
4,669,999 - MPMX20_04465 0.50 -1.9
4,669,999 - MPMX20_04465 0.50 -0.5
4,670,022 - MPMX20_04465 0.52 -1.2
4,670,022 - MPMX20_04465 0.52 +0.8
4,670,040 + MPMX20_04465 0.54 -1.2
4,670,136 - MPMX20_04465 0.65 -0.5
4,670,169 - MPMX20_04465 0.69 -1.4
4,670,180 - MPMX20_04465 0.70 -1.9
4,670,197 + MPMX20_04465 0.72 -2.1
4,670,240 - MPMX20_04465 0.77 +0.5
4,670,371 + -0.2
4,670,385 - +1.8
4,670,404 - +0.5
4,670,404 - -2.3
4,670,404 - -1.2
4,670,481 + -0.6
4,670,493 - -2.1
4,670,518 - MPMX20_04466 0.10 -1.1
4,670,535 - MPMX20_04466 0.12 -1.6
4,670,561 + MPMX20_04466 0.16 -2.0
4,670,652 - MPMX20_04466 0.29 -2.0
4,670,662 + MPMX20_04466 0.30 +0.2
4,670,746 - MPMX20_04466 0.42 -0.4
4,670,757 - MPMX20_04466 0.44 +0.2
4,670,788 + MPMX20_04466 0.48 -2.8
4,670,852 + MPMX20_04466 0.57 -1.8
4,671,009 - MPMX20_04466 0.79 -0.9
4,671,194 + -1.0
4,671,194 + -1.8
4,671,194 + -0.8
4,671,194 + +0.4
4,671,194 + -0.1
4,671,202 - -1.2
4,671,202 - -1.9
4,671,211 + +1.8
4,671,219 - +0.5
4,671,280 + MPMX20_04467 0.16 -1.5
4,671,288 - MPMX20_04467 0.17 +0.2
4,671,288 - MPMX20_04467 0.17 +0.2
4,671,288 - MPMX20_04467 0.17 -1.9
4,671,462 - MPMX20_04467 0.38 +0.1
4,671,474 + MPMX20_04467 0.39 -0.1
4,671,503 + MPMX20_04467 0.43 -0.1
4,671,526 + MPMX20_04467 0.45 +0.1
4,671,534 - MPMX20_04467 0.46 -0.2
4,671,534 - MPMX20_04467 0.46 -0.1
4,671,595 + MPMX20_04467 0.54 -1.4
4,671,596 + MPMX20_04467 0.54 +2.4
4,671,611 - MPMX20_04467 0.56 -1.6
4,671,653 + MPMX20_04467 0.61 +1.1
4,671,740 - MPMX20_04467 0.71 -1.4
4,671,776 - MPMX20_04467 0.76 -0.7
4,671,776 - MPMX20_04467 0.76 -0.3
4,671,841 - MPMX20_04467 0.84 +0.7
4,671,866 - MPMX20_04467 0.87 -2.1
4,671,891 + MPMX20_04467 0.90 +2.1
4,672,073 + +0.7
4,672,081 - +0.2
4,672,081 - -1.1
4,672,093 + +0.1
4,672,101 - -1.5
4,672,101 - -0.2
4,672,141 + +0.3
4,672,151 + +0.1
4,672,151 + +0.3
4,672,151 + -0.3

Or see this region's nucleotide sequence