Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04464 and MPMX20_04465 overlap by 1 nucleotides MPMX20_04465 and MPMX20_04466 overlap by 4 nucleotides MPMX20_04466 and MPMX20_04467 overlap by 4 nucleotides
MPMX20_04464: MPMX20_04464 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,668,832 to 4,669,548
_04464
MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450
_04465
MPMX20_04466: MPMX20_04466 - hypothetical protein, at 4,670,447 to 4,671,154
_04466
MPMX20_04467: MPMX20_04467 - Diaminopimelate epimerase, at 4,671,151 to 4,671,975
_04467
Position (kb)
4670
4671
4672 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4669.457 kb on + strand, within MPMX20_04464 at 4669.470 kb on - strand, within MPMX20_04464 at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.520 kb on - strand at 4669.534 kb on - strand at 4669.618 kb on + strand at 4669.618 kb on + strand at 4669.626 kb on - strand at 4669.650 kb on + strand, within MPMX20_04465 at 4669.658 kb on - strand, within MPMX20_04465 at 4669.743 kb on + strand, within MPMX20_04465 at 4669.769 kb on - strand, within MPMX20_04465 at 4669.769 kb on - strand, within MPMX20_04465 at 4669.774 kb on + strand, within MPMX20_04465 at 4669.787 kb on - strand, within MPMX20_04465 at 4669.851 kb on - strand, within MPMX20_04465 at 4669.862 kb on + strand, within MPMX20_04465 at 4669.862 kb on + strand, within MPMX20_04465 at 4669.867 kb on + strand, within MPMX20_04465 at 4669.870 kb on - strand, within MPMX20_04465 at 4669.875 kb on - strand, within MPMX20_04465 at 4669.927 kb on + strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4670.022 kb on - strand, within MPMX20_04465 at 4670.022 kb on - strand, within MPMX20_04465 at 4670.040 kb on + strand, within MPMX20_04465 at 4670.136 kb on - strand, within MPMX20_04465 at 4670.169 kb on - strand, within MPMX20_04465 at 4670.180 kb on - strand, within MPMX20_04465 at 4670.197 kb on + strand, within MPMX20_04465 at 4670.240 kb on - strand, within MPMX20_04465 at 4670.371 kb on + strand at 4670.385 kb on - strand at 4670.404 kb on - strand at 4670.404 kb on - strand at 4670.404 kb on - strand at 4670.481 kb on + strand at 4670.493 kb on - strand at 4670.518 kb on - strand, within MPMX20_04466 at 4670.535 kb on - strand, within MPMX20_04466 at 4670.561 kb on + strand, within MPMX20_04466 at 4670.652 kb on - strand, within MPMX20_04466 at 4670.662 kb on + strand, within MPMX20_04466 at 4670.746 kb on - strand, within MPMX20_04466 at 4670.757 kb on - strand, within MPMX20_04466 at 4670.788 kb on + strand, within MPMX20_04466 at 4670.852 kb on + strand, within MPMX20_04466 at 4671.009 kb on - strand, within MPMX20_04466 at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.202 kb on - strand at 4671.202 kb on - strand at 4671.211 kb on + strand at 4671.219 kb on - strand at 4671.280 kb on + strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.462 kb on - strand, within MPMX20_04467 at 4671.474 kb on + strand, within MPMX20_04467 at 4671.503 kb on + strand, within MPMX20_04467 at 4671.526 kb on + strand, within MPMX20_04467 at 4671.534 kb on - strand, within MPMX20_04467 at 4671.534 kb on - strand, within MPMX20_04467 at 4671.595 kb on + strand, within MPMX20_04467 at 4671.596 kb on + strand, within MPMX20_04467 at 4671.611 kb on - strand, within MPMX20_04467 at 4671.653 kb on + strand, within MPMX20_04467 at 4671.740 kb on - strand, within MPMX20_04467 at 4671.776 kb on - strand, within MPMX20_04467 at 4671.776 kb on - strand, within MPMX20_04467 at 4671.841 kb on - strand, within MPMX20_04467 at 4671.866 kb on - strand, within MPMX20_04467 at 4671.891 kb on + strand, within MPMX20_04467 at 4672.073 kb on + strand at 4672.081 kb on - strand at 4672.081 kb on - strand at 4672.093 kb on + strand at 4672.101 kb on - strand at 4672.101 kb on - strand at 4672.141 kb on + strand at 4672.151 kb on + strand at 4672.151 kb on + strand at 4672.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 4,669,457 + MPMX20_04464 0.87 +0.5 4,669,470 - MPMX20_04464 0.89 -1.8 4,669,508 - -1.0 4,669,508 - -0.2 4,669,508 - +0.4 4,669,520 - -0.4 4,669,534 - +1.1 4,669,618 + -2.6 4,669,618 + -1.8 4,669,626 - -1.4 4,669,650 + MPMX20_04465 0.11 -1.5 4,669,658 - MPMX20_04465 0.12 -1.2 4,669,743 + MPMX20_04465 0.22 -2.3 4,669,769 - MPMX20_04465 0.24 -0.9 4,669,769 - MPMX20_04465 0.24 -2.2 4,669,774 + MPMX20_04465 0.25 -1.4 4,669,787 - MPMX20_04465 0.26 -1.2 4,669,851 - MPMX20_04465 0.34 +0.8 4,669,862 + MPMX20_04465 0.35 -1.9 4,669,862 + MPMX20_04465 0.35 +0.2 4,669,867 + MPMX20_04465 0.35 +3.1 4,669,870 - MPMX20_04465 0.36 -0.2 4,669,875 - MPMX20_04465 0.36 -2.0 4,669,927 + MPMX20_04465 0.42 -1.0 4,669,999 - MPMX20_04465 0.50 +0.2 4,669,999 - MPMX20_04465 0.50 -1.9 4,669,999 - MPMX20_04465 0.50 -0.5 4,670,022 - MPMX20_04465 0.52 -1.2 4,670,022 - MPMX20_04465 0.52 +0.8 4,670,040 + MPMX20_04465 0.54 -1.2 4,670,136 - MPMX20_04465 0.65 -0.5 4,670,169 - MPMX20_04465 0.69 -1.4 4,670,180 - MPMX20_04465 0.70 -1.9 4,670,197 + MPMX20_04465 0.72 -2.1 4,670,240 - MPMX20_04465 0.77 +0.5 4,670,371 + -0.2 4,670,385 - +1.8 4,670,404 - +0.5 4,670,404 - -2.3 4,670,404 - -1.2 4,670,481 + -0.6 4,670,493 - -2.1 4,670,518 - MPMX20_04466 0.10 -1.1 4,670,535 - MPMX20_04466 0.12 -1.6 4,670,561 + MPMX20_04466 0.16 -2.0 4,670,652 - MPMX20_04466 0.29 -2.0 4,670,662 + MPMX20_04466 0.30 +0.2 4,670,746 - MPMX20_04466 0.42 -0.4 4,670,757 - MPMX20_04466 0.44 +0.2 4,670,788 + MPMX20_04466 0.48 -2.8 4,670,852 + MPMX20_04466 0.57 -1.8 4,671,009 - MPMX20_04466 0.79 -0.9 4,671,194 + -1.0 4,671,194 + -1.8 4,671,194 + -0.8 4,671,194 + +0.4 4,671,194 + -0.1 4,671,202 - -1.2 4,671,202 - -1.9 4,671,211 + +1.8 4,671,219 - +0.5 4,671,280 + MPMX20_04467 0.16 -1.5 4,671,288 - MPMX20_04467 0.17 +0.2 4,671,288 - MPMX20_04467 0.17 +0.2 4,671,288 - MPMX20_04467 0.17 -1.9 4,671,462 - MPMX20_04467 0.38 +0.1 4,671,474 + MPMX20_04467 0.39 -0.1 4,671,503 + MPMX20_04467 0.43 -0.1 4,671,526 + MPMX20_04467 0.45 +0.1 4,671,534 - MPMX20_04467 0.46 -0.2 4,671,534 - MPMX20_04467 0.46 -0.1 4,671,595 + MPMX20_04467 0.54 -1.4 4,671,596 + MPMX20_04467 0.54 +2.4 4,671,611 - MPMX20_04467 0.56 -1.6 4,671,653 + MPMX20_04467 0.61 +1.1 4,671,740 - MPMX20_04467 0.71 -1.4 4,671,776 - MPMX20_04467 0.76 -0.7 4,671,776 - MPMX20_04467 0.76 -0.3 4,671,841 - MPMX20_04467 0.84 +0.7 4,671,866 - MPMX20_04467 0.87 -2.1 4,671,891 + MPMX20_04467 0.90 +2.1 4,672,073 + +0.7 4,672,081 - +0.2 4,672,081 - -1.1 4,672,093 + +0.1 4,672,101 - -1.5 4,672,101 - -0.2 4,672,141 + +0.3 4,672,151 + +0.1 4,672,151 + +0.3 4,672,151 + -0.3
Or see this region's nucleotide sequence