Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04452

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04451 and MPMX20_04452 are separated by 116 nucleotidesMPMX20_04452 and MPMX20_04453 overlap by 113 nucleotidesMPMX20_04453 and MPMX20_04454 are separated by 82 nucleotides MPMX20_04451: MPMX20_04451 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 4,653,437 to 4,655,698 _04451 MPMX20_04452: MPMX20_04452 - HTH-type transcriptional regulator MetR, at 4,655,815 to 4,656,768 _04452 MPMX20_04453: MPMX20_04453 - Biotin transporter, at 4,656,656 to 4,657,555 _04453 MPMX20_04454: MPMX20_04454 - Pyridoxal phosphate phosphatase YigL, at 4,657,638 to 4,658,438 _04454 Position (kb) 4655 4656 4657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4654.863 kb on + strand, within MPMX20_04451at 4654.871 kb on - strand, within MPMX20_04451at 4654.887 kb on + strand, within MPMX20_04451at 4654.925 kb on - strand, within MPMX20_04451at 4654.941 kb on - strand, within MPMX20_04451at 4654.949 kb on - strand, within MPMX20_04451at 4654.986 kb on + strand, within MPMX20_04451at 4654.994 kb on - strand, within MPMX20_04451at 4654.994 kb on - strand, within MPMX20_04451at 4655.111 kb on + strand, within MPMX20_04451at 4655.153 kb on + strand, within MPMX20_04451at 4655.183 kb on - strand, within MPMX20_04451at 4655.223 kb on + strand, within MPMX20_04451at 4655.267 kb on - strand, within MPMX20_04451at 4655.280 kb on - strand, within MPMX20_04451at 4655.411 kb on - strand, within MPMX20_04451at 4655.411 kb on - strand, within MPMX20_04451at 4655.444 kb on - strand, within MPMX20_04451at 4655.473 kb on + strandat 4655.522 kb on - strandat 4655.535 kb on - strandat 4655.559 kb on - strandat 4655.580 kb on - strandat 4655.673 kb on + strandat 4655.840 kb on + strandat 4655.892 kb on + strandat 4655.900 kb on - strandat 4656.041 kb on - strand, within MPMX20_04452at 4656.060 kb on - strand, within MPMX20_04452at 4656.110 kb on + strand, within MPMX20_04452at 4656.113 kb on + strand, within MPMX20_04452at 4656.173 kb on - strand, within MPMX20_04452at 4656.200 kb on + strand, within MPMX20_04452at 4656.212 kb on + strand, within MPMX20_04452at 4656.231 kb on + strand, within MPMX20_04452at 4656.237 kb on + strand, within MPMX20_04452at 4656.252 kb on - strand, within MPMX20_04452at 4656.253 kb on - strand, within MPMX20_04452at 4656.276 kb on - strand, within MPMX20_04452at 4656.276 kb on - strand, within MPMX20_04452at 4656.305 kb on + strand, within MPMX20_04452at 4656.305 kb on + strand, within MPMX20_04452at 4656.312 kb on - strand, within MPMX20_04452at 4656.323 kb on - strand, within MPMX20_04452at 4656.346 kb on - strand, within MPMX20_04452at 4656.369 kb on - strand, within MPMX20_04452at 4656.384 kb on + strand, within MPMX20_04452at 4656.384 kb on + strand, within MPMX20_04452at 4656.394 kb on + strand, within MPMX20_04452at 4656.523 kb on - strand, within MPMX20_04452at 4656.525 kb on + strand, within MPMX20_04452at 4656.528 kb on + strand, within MPMX20_04452at 4656.533 kb on + strand, within MPMX20_04452at 4656.553 kb on - strand, within MPMX20_04452at 4656.568 kb on - strand, within MPMX20_04452at 4656.589 kb on + strand, within MPMX20_04452at 4656.660 kb on - strandat 4656.667 kb on + strandat 4656.725 kb on - strandat 4656.864 kb on + strand, within MPMX20_04453at 4656.872 kb on - strand, within MPMX20_04453at 4656.872 kb on - strand, within MPMX20_04453at 4656.985 kb on + strand, within MPMX20_04453at 4657.112 kb on - strand, within MPMX20_04453at 4657.130 kb on + strand, within MPMX20_04453at 4657.140 kb on + strand, within MPMX20_04453at 4657.140 kb on + strand, within MPMX20_04453at 4657.140 kb on + strand, within MPMX20_04453at 4657.140 kb on + strand, within MPMX20_04453at 4657.140 kb on + strand, within MPMX20_04453at 4657.148 kb on - strand, within MPMX20_04453at 4657.148 kb on - strand, within MPMX20_04453at 4657.148 kb on - strand, within MPMX20_04453at 4657.182 kb on + strand, within MPMX20_04453at 4657.203 kb on + strand, within MPMX20_04453at 4657.256 kb on - strand, within MPMX20_04453at 4657.273 kb on - strand, within MPMX20_04453at 4657.462 kb on - strand, within MPMX20_04453at 4657.492 kb on + strandat 4657.493 kb on + strandat 4657.515 kb on - strandat 4657.515 kb on - strandat 4657.521 kb on + strandat 4657.528 kb on + strandat 4657.529 kb on - strandat 4657.536 kb on - strandat 4657.592 kb on - strandat 4657.692 kb on - strandat 4657.733 kb on + strand, within MPMX20_04454

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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4,654,863 + MPMX20_04451 0.63 +1.0
4,654,871 - MPMX20_04451 0.63 -1.8
4,654,887 + MPMX20_04451 0.64 +0.7
4,654,925 - MPMX20_04451 0.66 -1.0
4,654,941 - MPMX20_04451 0.66 +0.2
4,654,949 - MPMX20_04451 0.67 +0.4
4,654,986 + MPMX20_04451 0.68 -0.2
4,654,994 - MPMX20_04451 0.69 -0.6
4,654,994 - MPMX20_04451 0.69 +1.5
4,655,111 + MPMX20_04451 0.74 -0.3
4,655,153 + MPMX20_04451 0.76 +0.3
4,655,183 - MPMX20_04451 0.77 +1.2
4,655,223 + MPMX20_04451 0.79 +0.2
4,655,267 - MPMX20_04451 0.81 -0.7
4,655,280 - MPMX20_04451 0.81 +0.6
4,655,411 - MPMX20_04451 0.87 -1.1
4,655,411 - MPMX20_04451 0.87 +0.6
4,655,444 - MPMX20_04451 0.89 +0.5
4,655,473 + +1.1
4,655,522 - +0.8
4,655,535 - -1.5
4,655,559 - -0.1
4,655,580 - -0.4
4,655,673 + +0.2
4,655,840 + -0.1
4,655,892 + -0.3
4,655,900 - -0.7
4,656,041 - MPMX20_04452 0.24 -1.2
4,656,060 - MPMX20_04452 0.26 -1.8
4,656,110 + MPMX20_04452 0.31 -1.2
4,656,113 + MPMX20_04452 0.31 -0.2
4,656,173 - MPMX20_04452 0.38 -0.2
4,656,200 + MPMX20_04452 0.40 -1.8
4,656,212 + MPMX20_04452 0.42 +1.6
4,656,231 + MPMX20_04452 0.44 -0.8
4,656,237 + MPMX20_04452 0.44 -0.4
4,656,252 - MPMX20_04452 0.46 +1.2
4,656,253 - MPMX20_04452 0.46 -0.9
4,656,276 - MPMX20_04452 0.48 -3.3
4,656,276 - MPMX20_04452 0.48 -2.0
4,656,305 + MPMX20_04452 0.51 -0.8
4,656,305 + MPMX20_04452 0.51 +1.5
4,656,312 - MPMX20_04452 0.52 -0.4
4,656,323 - MPMX20_04452 0.53 -0.8
4,656,346 - MPMX20_04452 0.56 +0.5
4,656,369 - MPMX20_04452 0.58 -0.9
4,656,384 + MPMX20_04452 0.60 -0.8
4,656,384 + MPMX20_04452 0.60 -0.1
4,656,394 + MPMX20_04452 0.61 -2.0
4,656,523 - MPMX20_04452 0.74 -1.0
4,656,525 + MPMX20_04452 0.74 -0.6
4,656,528 + MPMX20_04452 0.75 -0.8
4,656,533 + MPMX20_04452 0.75 -1.5
4,656,553 - MPMX20_04452 0.77 -1.7
4,656,568 - MPMX20_04452 0.79 -1.3
4,656,589 + MPMX20_04452 0.81 -0.8
4,656,660 - +0.6
4,656,667 + -0.7
4,656,725 - +3.8
4,656,864 + MPMX20_04453 0.23 -1.6
4,656,872 - MPMX20_04453 0.24 +4.6
4,656,872 - MPMX20_04453 0.24 -0.2
4,656,985 + MPMX20_04453 0.37 -0.0
4,657,112 - MPMX20_04453 0.51 -0.9
4,657,130 + MPMX20_04453 0.53 +0.2
4,657,140 + MPMX20_04453 0.54 -0.5
4,657,140 + MPMX20_04453 0.54 +0.3
4,657,140 + MPMX20_04453 0.54 -0.1
4,657,140 + MPMX20_04453 0.54 +0.1
4,657,140 + MPMX20_04453 0.54 -1.4
4,657,148 - MPMX20_04453 0.55 -0.3
4,657,148 - MPMX20_04453 0.55 -0.2
4,657,148 - MPMX20_04453 0.55 -2.4
4,657,182 + MPMX20_04453 0.58 -0.3
4,657,203 + MPMX20_04453 0.61 -2.2
4,657,256 - MPMX20_04453 0.67 +0.9
4,657,273 - MPMX20_04453 0.69 +0.3
4,657,462 - MPMX20_04453 0.90 -1.0
4,657,492 + +0.4
4,657,493 + +0.7
4,657,515 - +0.4
4,657,515 - -0.2
4,657,521 + +0.4
4,657,528 + -0.8
4,657,529 - +0.1
4,657,536 - -1.6
4,657,592 - +0.8
4,657,692 - +0.6
4,657,733 + MPMX20_04454 0.12 +0.1

Or see this region's nucleotide sequence