Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04451 and MPMX20_04452 are separated by 116 nucleotides MPMX20_04452 and MPMX20_04453 overlap by 113 nucleotides MPMX20_04453 and MPMX20_04454 are separated by 82 nucleotides
MPMX20_04451: MPMX20_04451 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 4,653,437 to 4,655,698
_04451
MPMX20_04452: MPMX20_04452 - HTH-type transcriptional regulator MetR, at 4,655,815 to 4,656,768
_04452
MPMX20_04453: MPMX20_04453 - Biotin transporter, at 4,656,656 to 4,657,555
_04453
MPMX20_04454: MPMX20_04454 - Pyridoxal phosphate phosphatase YigL, at 4,657,638 to 4,658,438
_04454
Position (kb)
4655
4656
4657 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4654.863 kb on + strand, within MPMX20_04451 at 4654.871 kb on - strand, within MPMX20_04451 at 4654.887 kb on + strand, within MPMX20_04451 at 4654.925 kb on - strand, within MPMX20_04451 at 4654.941 kb on - strand, within MPMX20_04451 at 4654.949 kb on - strand, within MPMX20_04451 at 4654.986 kb on + strand, within MPMX20_04451 at 4654.994 kb on - strand, within MPMX20_04451 at 4654.994 kb on - strand, within MPMX20_04451 at 4655.111 kb on + strand, within MPMX20_04451 at 4655.153 kb on + strand, within MPMX20_04451 at 4655.183 kb on - strand, within MPMX20_04451 at 4655.223 kb on + strand, within MPMX20_04451 at 4655.267 kb on - strand, within MPMX20_04451 at 4655.280 kb on - strand, within MPMX20_04451 at 4655.411 kb on - strand, within MPMX20_04451 at 4655.411 kb on - strand, within MPMX20_04451 at 4655.444 kb on - strand, within MPMX20_04451 at 4655.473 kb on + strand at 4655.522 kb on - strand at 4655.535 kb on - strand at 4655.559 kb on - strand at 4655.580 kb on - strand at 4655.673 kb on + strand at 4655.840 kb on + strand at 4655.892 kb on + strand at 4655.900 kb on - strand at 4656.041 kb on - strand, within MPMX20_04452 at 4656.060 kb on - strand, within MPMX20_04452 at 4656.110 kb on + strand, within MPMX20_04452 at 4656.113 kb on + strand, within MPMX20_04452 at 4656.173 kb on - strand, within MPMX20_04452 at 4656.200 kb on + strand, within MPMX20_04452 at 4656.212 kb on + strand, within MPMX20_04452 at 4656.231 kb on + strand, within MPMX20_04452 at 4656.237 kb on + strand, within MPMX20_04452 at 4656.252 kb on - strand, within MPMX20_04452 at 4656.253 kb on - strand, within MPMX20_04452 at 4656.276 kb on - strand, within MPMX20_04452 at 4656.276 kb on - strand, within MPMX20_04452 at 4656.305 kb on + strand, within MPMX20_04452 at 4656.305 kb on + strand, within MPMX20_04452 at 4656.312 kb on - strand, within MPMX20_04452 at 4656.323 kb on - strand, within MPMX20_04452 at 4656.346 kb on - strand, within MPMX20_04452 at 4656.369 kb on - strand, within MPMX20_04452 at 4656.384 kb on + strand, within MPMX20_04452 at 4656.384 kb on + strand, within MPMX20_04452 at 4656.394 kb on + strand, within MPMX20_04452 at 4656.523 kb on - strand, within MPMX20_04452 at 4656.525 kb on + strand, within MPMX20_04452 at 4656.528 kb on + strand, within MPMX20_04452 at 4656.533 kb on + strand, within MPMX20_04452 at 4656.553 kb on - strand, within MPMX20_04452 at 4656.568 kb on - strand, within MPMX20_04452 at 4656.589 kb on + strand, within MPMX20_04452 at 4656.660 kb on - strand at 4656.667 kb on + strand at 4656.725 kb on - strand at 4656.864 kb on + strand, within MPMX20_04453 at 4656.872 kb on - strand, within MPMX20_04453 at 4656.872 kb on - strand, within MPMX20_04453 at 4656.985 kb on + strand, within MPMX20_04453 at 4657.112 kb on - strand, within MPMX20_04453 at 4657.130 kb on + strand, within MPMX20_04453 at 4657.140 kb on + strand, within MPMX20_04453 at 4657.140 kb on + strand, within MPMX20_04453 at 4657.140 kb on + strand, within MPMX20_04453 at 4657.140 kb on + strand, within MPMX20_04453 at 4657.140 kb on + strand, within MPMX20_04453 at 4657.148 kb on - strand, within MPMX20_04453 at 4657.148 kb on - strand, within MPMX20_04453 at 4657.148 kb on - strand, within MPMX20_04453 at 4657.182 kb on + strand, within MPMX20_04453 at 4657.203 kb on + strand, within MPMX20_04453 at 4657.256 kb on - strand, within MPMX20_04453 at 4657.273 kb on - strand, within MPMX20_04453 at 4657.462 kb on - strand, within MPMX20_04453 at 4657.492 kb on + strand at 4657.493 kb on + strand at 4657.515 kb on - strand at 4657.515 kb on - strand at 4657.521 kb on + strand at 4657.528 kb on + strand at 4657.529 kb on - strand at 4657.536 kb on - strand at 4657.592 kb on - strand at 4657.692 kb on - strand at 4657.733 kb on + strand, within MPMX20_04454
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 4,654,863 + MPMX20_04451 0.63 +1.0 4,654,871 - MPMX20_04451 0.63 -1.8 4,654,887 + MPMX20_04451 0.64 +0.7 4,654,925 - MPMX20_04451 0.66 -1.0 4,654,941 - MPMX20_04451 0.66 +0.2 4,654,949 - MPMX20_04451 0.67 +0.4 4,654,986 + MPMX20_04451 0.68 -0.2 4,654,994 - MPMX20_04451 0.69 -0.6 4,654,994 - MPMX20_04451 0.69 +1.5 4,655,111 + MPMX20_04451 0.74 -0.3 4,655,153 + MPMX20_04451 0.76 +0.3 4,655,183 - MPMX20_04451 0.77 +1.2 4,655,223 + MPMX20_04451 0.79 +0.2 4,655,267 - MPMX20_04451 0.81 -0.7 4,655,280 - MPMX20_04451 0.81 +0.6 4,655,411 - MPMX20_04451 0.87 -1.1 4,655,411 - MPMX20_04451 0.87 +0.6 4,655,444 - MPMX20_04451 0.89 +0.5 4,655,473 + +1.1 4,655,522 - +0.8 4,655,535 - -1.5 4,655,559 - -0.1 4,655,580 - -0.4 4,655,673 + +0.2 4,655,840 + -0.1 4,655,892 + -0.3 4,655,900 - -0.7 4,656,041 - MPMX20_04452 0.24 -1.2 4,656,060 - MPMX20_04452 0.26 -1.8 4,656,110 + MPMX20_04452 0.31 -1.2 4,656,113 + MPMX20_04452 0.31 -0.2 4,656,173 - MPMX20_04452 0.38 -0.2 4,656,200 + MPMX20_04452 0.40 -1.8 4,656,212 + MPMX20_04452 0.42 +1.6 4,656,231 + MPMX20_04452 0.44 -0.8 4,656,237 + MPMX20_04452 0.44 -0.4 4,656,252 - MPMX20_04452 0.46 +1.2 4,656,253 - MPMX20_04452 0.46 -0.9 4,656,276 - MPMX20_04452 0.48 -3.3 4,656,276 - MPMX20_04452 0.48 -2.0 4,656,305 + MPMX20_04452 0.51 -0.8 4,656,305 + MPMX20_04452 0.51 +1.5 4,656,312 - MPMX20_04452 0.52 -0.4 4,656,323 - MPMX20_04452 0.53 -0.8 4,656,346 - MPMX20_04452 0.56 +0.5 4,656,369 - MPMX20_04452 0.58 -0.9 4,656,384 + MPMX20_04452 0.60 -0.8 4,656,384 + MPMX20_04452 0.60 -0.1 4,656,394 + MPMX20_04452 0.61 -2.0 4,656,523 - MPMX20_04452 0.74 -1.0 4,656,525 + MPMX20_04452 0.74 -0.6 4,656,528 + MPMX20_04452 0.75 -0.8 4,656,533 + MPMX20_04452 0.75 -1.5 4,656,553 - MPMX20_04452 0.77 -1.7 4,656,568 - MPMX20_04452 0.79 -1.3 4,656,589 + MPMX20_04452 0.81 -0.8 4,656,660 - +0.6 4,656,667 + -0.7 4,656,725 - +3.8 4,656,864 + MPMX20_04453 0.23 -1.6 4,656,872 - MPMX20_04453 0.24 +4.6 4,656,872 - MPMX20_04453 0.24 -0.2 4,656,985 + MPMX20_04453 0.37 -0.0 4,657,112 - MPMX20_04453 0.51 -0.9 4,657,130 + MPMX20_04453 0.53 +0.2 4,657,140 + MPMX20_04453 0.54 -0.5 4,657,140 + MPMX20_04453 0.54 +0.3 4,657,140 + MPMX20_04453 0.54 -0.1 4,657,140 + MPMX20_04453 0.54 +0.1 4,657,140 + MPMX20_04453 0.54 -1.4 4,657,148 - MPMX20_04453 0.55 -0.3 4,657,148 - MPMX20_04453 0.55 -0.2 4,657,148 - MPMX20_04453 0.55 -2.4 4,657,182 + MPMX20_04453 0.58 -0.3 4,657,203 + MPMX20_04453 0.61 -2.2 4,657,256 - MPMX20_04453 0.67 +0.9 4,657,273 - MPMX20_04453 0.69 +0.3 4,657,462 - MPMX20_04453 0.90 -1.0 4,657,492 + +0.4 4,657,493 + +0.7 4,657,515 - +0.4 4,657,515 - -0.2 4,657,521 + +0.4 4,657,528 + -0.8 4,657,529 - +0.1 4,657,536 - -1.6 4,657,592 - +0.8 4,657,692 - +0.6 4,657,733 + MPMX20_04454 0.12 +0.1
Or see this region's nucleotide sequence