Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04298

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04296 and MPMX20_04297 are separated by 10 nucleotidesMPMX20_04297 and MPMX20_04298 are separated by 30 nucleotidesMPMX20_04298 and MPMX20_04299 are separated by 111 nucleotidesMPMX20_04299 and MPMX20_04300 are separated by 36 nucleotides MPMX20_04296: MPMX20_04296 - Fe(2+) transporter FeoB, at 4,481,495 to 4,483,813 _04296 MPMX20_04297: MPMX20_04297 - putative [Fe-S]-dependent transcriptional repressor FeoC, at 4,483,824 to 4,484,063 _04297 MPMX20_04298: MPMX20_04298 - hypothetical protein, at 4,484,094 to 4,484,363 _04298 MPMX20_04299: MPMX20_04299 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,484,475 to 4,485,248 _04299 MPMX20_04300: MPMX20_04300 - Putative ribose-phosphate pyrophosphokinase, at 4,485,285 to 4,485,968 _04300 Position (kb) 4484 4485Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4483.094 kb on - strand, within MPMX20_04296at 4483.264 kb on + strand, within MPMX20_04296at 4483.264 kb on + strand, within MPMX20_04296at 4483.279 kb on + strand, within MPMX20_04296at 4483.282 kb on - strand, within MPMX20_04296at 4483.382 kb on - strand, within MPMX20_04296at 4483.382 kb on - strand, within MPMX20_04296at 4483.382 kb on - strand, within MPMX20_04296at 4483.382 kb on - strand, within MPMX20_04296at 4483.388 kb on - strand, within MPMX20_04296at 4483.411 kb on + strand, within MPMX20_04296at 4483.411 kb on + strand, within MPMX20_04296at 4483.411 kb on + strand, within MPMX20_04296at 4483.411 kb on - strand, within MPMX20_04296at 4483.413 kb on + strand, within MPMX20_04296at 4483.419 kb on - strand, within MPMX20_04296at 4483.448 kb on + strand, within MPMX20_04296at 4483.448 kb on + strand, within MPMX20_04296at 4483.448 kb on + strand, within MPMX20_04296at 4483.456 kb on - strand, within MPMX20_04296at 4483.497 kb on - strand, within MPMX20_04296at 4483.510 kb on + strand, within MPMX20_04296at 4483.518 kb on - strand, within MPMX20_04296at 4483.619 kb on - strandat 4483.635 kb on + strandat 4483.641 kb on + strandat 4483.677 kb on - strandat 4483.750 kb on - strandat 4483.814 kb on + strandat 4483.850 kb on - strand, within MPMX20_04297at 4483.891 kb on + strand, within MPMX20_04297at 4483.891 kb on + strand, within MPMX20_04297at 4483.899 kb on - strand, within MPMX20_04297at 4483.906 kb on + strand, within MPMX20_04297at 4483.969 kb on + strand, within MPMX20_04297at 4483.987 kb on - strand, within MPMX20_04297at 4484.040 kb on - strandat 4484.044 kb on + strandat 4484.052 kb on - strandat 4484.096 kb on + strandat 4484.155 kb on + strand, within MPMX20_04298at 4484.163 kb on + strand, within MPMX20_04298at 4484.163 kb on - strand, within MPMX20_04298at 4484.193 kb on - strand, within MPMX20_04298at 4484.299 kb on - strand, within MPMX20_04298at 4484.373 kb on - strandat 4484.383 kb on - strandat 4484.430 kb on - strandat 4484.517 kb on - strandat 4484.930 kb on + strand, within MPMX20_04299at 4484.935 kb on + strand, within MPMX20_04299at 4484.943 kb on - strand, within MPMX20_04299at 4484.943 kb on - strand, within MPMX20_04299at 4484.943 kb on - strand, within MPMX20_04299at 4484.953 kb on - strand, within MPMX20_04299at 4484.962 kb on + strand, within MPMX20_04299at 4484.967 kb on + strand, within MPMX20_04299at 4484.975 kb on - strand, within MPMX20_04299at 4485.039 kb on + strand, within MPMX20_04299at 4485.047 kb on - strand, within MPMX20_04299at 4485.179 kb on + strandat 4485.218 kb on + strandat 4485.218 kb on + strandat 4485.251 kb on - strandat 4485.284 kb on + strandat 4485.286 kb on + strandat 4485.294 kb on - strandat 4485.294 kb on - strandat 4485.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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4,483,094 - MPMX20_04296 0.69 -0.8
4,483,264 + MPMX20_04296 0.76 -0.5
4,483,264 + MPMX20_04296 0.76 +0.2
4,483,279 + MPMX20_04296 0.77 -0.4
4,483,282 - MPMX20_04296 0.77 -0.4
4,483,382 - MPMX20_04296 0.81 +0.2
4,483,382 - MPMX20_04296 0.81 -0.5
4,483,382 - MPMX20_04296 0.81 -0.8
4,483,382 - MPMX20_04296 0.81 -0.7
4,483,388 - MPMX20_04296 0.82 +0.9
4,483,411 + MPMX20_04296 0.83 -0.3
4,483,411 + MPMX20_04296 0.83 +1.8
4,483,411 + MPMX20_04296 0.83 -1.7
4,483,411 - MPMX20_04296 0.83 -0.1
4,483,413 + MPMX20_04296 0.83 -0.5
4,483,419 - MPMX20_04296 0.83 -2.2
4,483,448 + MPMX20_04296 0.84 -0.3
4,483,448 + MPMX20_04296 0.84 -1.8
4,483,448 + MPMX20_04296 0.84 +0.2
4,483,456 - MPMX20_04296 0.85 -0.4
4,483,497 - MPMX20_04296 0.86 -0.3
4,483,510 + MPMX20_04296 0.87 +0.5
4,483,518 - MPMX20_04296 0.87 +0.8
4,483,619 - +1.2
4,483,635 + -2.3
4,483,641 + -0.2
4,483,677 - -0.1
4,483,750 - +0.0
4,483,814 + -0.4
4,483,850 - MPMX20_04297 0.11 +0.2
4,483,891 + MPMX20_04297 0.28 -0.0
4,483,891 + MPMX20_04297 0.28 +0.1
4,483,899 - MPMX20_04297 0.31 -2.0
4,483,906 + MPMX20_04297 0.34 -2.1
4,483,969 + MPMX20_04297 0.60 -0.1
4,483,987 - MPMX20_04297 0.68 -1.1
4,484,040 - -0.9
4,484,044 + +0.1
4,484,052 - -0.2
4,484,096 + +0.0
4,484,155 + MPMX20_04298 0.23 -0.6
4,484,163 + MPMX20_04298 0.26 -2.0
4,484,163 - MPMX20_04298 0.26 -0.5
4,484,193 - MPMX20_04298 0.37 -0.8
4,484,299 - MPMX20_04298 0.76 +1.2
4,484,373 - +0.4
4,484,383 - -0.5
4,484,430 - -0.1
4,484,517 - -1.8
4,484,930 + MPMX20_04299 0.59 -1.4
4,484,935 + MPMX20_04299 0.59 +0.7
4,484,943 - MPMX20_04299 0.60 +1.9
4,484,943 - MPMX20_04299 0.60 -0.2
4,484,943 - MPMX20_04299 0.60 -0.4
4,484,953 - MPMX20_04299 0.62 +0.3
4,484,962 + MPMX20_04299 0.63 -0.5
4,484,967 + MPMX20_04299 0.64 +0.9
4,484,975 - MPMX20_04299 0.65 +0.1
4,485,039 + MPMX20_04299 0.73 -3.2
4,485,047 - MPMX20_04299 0.74 -2.2
4,485,179 + -2.6
4,485,218 + +0.8
4,485,218 + +0.0
4,485,251 - +0.5
4,485,284 + -2.7
4,485,286 + +0.1
4,485,294 - +1.8
4,485,294 - +0.7
4,485,324 + +0.5

Or see this region's nucleotide sequence