Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04296 and MPMX20_04297 are separated by 10 nucleotides MPMX20_04297 and MPMX20_04298 are separated by 30 nucleotides MPMX20_04298 and MPMX20_04299 are separated by 111 nucleotides MPMX20_04299 and MPMX20_04300 are separated by 36 nucleotides
MPMX20_04296: MPMX20_04296 - Fe(2+) transporter FeoB, at 4,481,495 to 4,483,813
_04296
MPMX20_04297: MPMX20_04297 - putative [Fe-S]-dependent transcriptional repressor FeoC, at 4,483,824 to 4,484,063
_04297
MPMX20_04298: MPMX20_04298 - hypothetical protein, at 4,484,094 to 4,484,363
_04298
MPMX20_04299: MPMX20_04299 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,484,475 to 4,485,248
_04299
MPMX20_04300: MPMX20_04300 - Putative ribose-phosphate pyrophosphokinase, at 4,485,285 to 4,485,968
_04300
Position (kb)
4484
4485 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4483.094 kb on - strand, within MPMX20_04296 at 4483.264 kb on + strand, within MPMX20_04296 at 4483.264 kb on + strand, within MPMX20_04296 at 4483.279 kb on + strand, within MPMX20_04296 at 4483.282 kb on - strand, within MPMX20_04296 at 4483.382 kb on - strand, within MPMX20_04296 at 4483.382 kb on - strand, within MPMX20_04296 at 4483.382 kb on - strand, within MPMX20_04296 at 4483.382 kb on - strand, within MPMX20_04296 at 4483.388 kb on - strand, within MPMX20_04296 at 4483.411 kb on + strand, within MPMX20_04296 at 4483.411 kb on + strand, within MPMX20_04296 at 4483.411 kb on + strand, within MPMX20_04296 at 4483.411 kb on - strand, within MPMX20_04296 at 4483.413 kb on + strand, within MPMX20_04296 at 4483.419 kb on - strand, within MPMX20_04296 at 4483.448 kb on + strand, within MPMX20_04296 at 4483.448 kb on + strand, within MPMX20_04296 at 4483.448 kb on + strand, within MPMX20_04296 at 4483.456 kb on - strand, within MPMX20_04296 at 4483.497 kb on - strand, within MPMX20_04296 at 4483.510 kb on + strand, within MPMX20_04296 at 4483.518 kb on - strand, within MPMX20_04296 at 4483.619 kb on - strand at 4483.635 kb on + strand at 4483.641 kb on + strand at 4483.677 kb on - strand at 4483.750 kb on - strand at 4483.814 kb on + strand at 4483.850 kb on - strand, within MPMX20_04297 at 4483.891 kb on + strand, within MPMX20_04297 at 4483.891 kb on + strand, within MPMX20_04297 at 4483.899 kb on - strand, within MPMX20_04297 at 4483.906 kb on + strand, within MPMX20_04297 at 4483.969 kb on + strand, within MPMX20_04297 at 4483.987 kb on - strand, within MPMX20_04297 at 4484.040 kb on - strand at 4484.044 kb on + strand at 4484.052 kb on - strand at 4484.096 kb on + strand at 4484.155 kb on + strand, within MPMX20_04298 at 4484.163 kb on + strand, within MPMX20_04298 at 4484.163 kb on - strand, within MPMX20_04298 at 4484.193 kb on - strand, within MPMX20_04298 at 4484.299 kb on - strand, within MPMX20_04298 at 4484.373 kb on - strand at 4484.383 kb on - strand at 4484.430 kb on - strand at 4484.517 kb on - strand at 4484.930 kb on + strand, within MPMX20_04299 at 4484.935 kb on + strand, within MPMX20_04299 at 4484.943 kb on - strand, within MPMX20_04299 at 4484.943 kb on - strand, within MPMX20_04299 at 4484.943 kb on - strand, within MPMX20_04299 at 4484.953 kb on - strand, within MPMX20_04299 at 4484.962 kb on + strand, within MPMX20_04299 at 4484.967 kb on + strand, within MPMX20_04299 at 4484.975 kb on - strand, within MPMX20_04299 at 4485.039 kb on + strand, within MPMX20_04299 at 4485.047 kb on - strand, within MPMX20_04299 at 4485.179 kb on + strand at 4485.218 kb on + strand at 4485.218 kb on + strand at 4485.251 kb on - strand at 4485.284 kb on + strand at 4485.286 kb on + strand at 4485.294 kb on - strand at 4485.294 kb on - strand at 4485.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 4,483,094 - MPMX20_04296 0.69 -0.8 4,483,264 + MPMX20_04296 0.76 -0.5 4,483,264 + MPMX20_04296 0.76 +0.2 4,483,279 + MPMX20_04296 0.77 -0.4 4,483,282 - MPMX20_04296 0.77 -0.4 4,483,382 - MPMX20_04296 0.81 +0.2 4,483,382 - MPMX20_04296 0.81 -0.5 4,483,382 - MPMX20_04296 0.81 -0.8 4,483,382 - MPMX20_04296 0.81 -0.7 4,483,388 - MPMX20_04296 0.82 +0.9 4,483,411 + MPMX20_04296 0.83 -0.3 4,483,411 + MPMX20_04296 0.83 +1.8 4,483,411 + MPMX20_04296 0.83 -1.7 4,483,411 - MPMX20_04296 0.83 -0.1 4,483,413 + MPMX20_04296 0.83 -0.5 4,483,419 - MPMX20_04296 0.83 -2.2 4,483,448 + MPMX20_04296 0.84 -0.3 4,483,448 + MPMX20_04296 0.84 -1.8 4,483,448 + MPMX20_04296 0.84 +0.2 4,483,456 - MPMX20_04296 0.85 -0.4 4,483,497 - MPMX20_04296 0.86 -0.3 4,483,510 + MPMX20_04296 0.87 +0.5 4,483,518 - MPMX20_04296 0.87 +0.8 4,483,619 - +1.2 4,483,635 + -2.3 4,483,641 + -0.2 4,483,677 - -0.1 4,483,750 - +0.0 4,483,814 + -0.4 4,483,850 - MPMX20_04297 0.11 +0.2 4,483,891 + MPMX20_04297 0.28 -0.0 4,483,891 + MPMX20_04297 0.28 +0.1 4,483,899 - MPMX20_04297 0.31 -2.0 4,483,906 + MPMX20_04297 0.34 -2.1 4,483,969 + MPMX20_04297 0.60 -0.1 4,483,987 - MPMX20_04297 0.68 -1.1 4,484,040 - -0.9 4,484,044 + +0.1 4,484,052 - -0.2 4,484,096 + +0.0 4,484,155 + MPMX20_04298 0.23 -0.6 4,484,163 + MPMX20_04298 0.26 -2.0 4,484,163 - MPMX20_04298 0.26 -0.5 4,484,193 - MPMX20_04298 0.37 -0.8 4,484,299 - MPMX20_04298 0.76 +1.2 4,484,373 - +0.4 4,484,383 - -0.5 4,484,430 - -0.1 4,484,517 - -1.8 4,484,930 + MPMX20_04299 0.59 -1.4 4,484,935 + MPMX20_04299 0.59 +0.7 4,484,943 - MPMX20_04299 0.60 +1.9 4,484,943 - MPMX20_04299 0.60 -0.2 4,484,943 - MPMX20_04299 0.60 -0.4 4,484,953 - MPMX20_04299 0.62 +0.3 4,484,962 + MPMX20_04299 0.63 -0.5 4,484,967 + MPMX20_04299 0.64 +0.9 4,484,975 - MPMX20_04299 0.65 +0.1 4,485,039 + MPMX20_04299 0.73 -3.2 4,485,047 - MPMX20_04299 0.74 -2.2 4,485,179 + -2.6 4,485,218 + +0.8 4,485,218 + +0.0 4,485,251 - +0.5 4,485,284 + -2.7 4,485,286 + +0.1 4,485,294 - +1.8 4,485,294 - +0.7 4,485,324 + +0.5
Or see this region's nucleotide sequence