Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03260

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03259 and MPMX20_03260 are separated by 50 nucleotidesMPMX20_03260 and MPMX20_03261 are separated by 13 nucleotidesMPMX20_03261 and MPMX20_03262 overlap by 1 nucleotides MPMX20_03259: MPMX20_03259 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 3,429,765 to 3,431,762 _03259 MPMX20_03260: MPMX20_03260 - hypothetical protein, at 3,431,813 to 3,432,091 _03260 MPMX20_03261: MPMX20_03261 - Elongation factor P hydroxylase, at 3,432,105 to 3,432,650 _03261 MPMX20_03262: MPMX20_03262 - putative membrane transporter protein YfcA, at 3,432,650 to 3,433,459 _03262 Position (kb) 3431 3432 3433Strain fitness (log2 ratio) -2 -1 0 1at 3430.834 kb on - strand, within MPMX20_03259at 3430.839 kb on - strand, within MPMX20_03259at 3430.847 kb on + strand, within MPMX20_03259at 3431.022 kb on - strand, within MPMX20_03259at 3431.138 kb on + strand, within MPMX20_03259at 3431.146 kb on - strand, within MPMX20_03259at 3431.162 kb on + strand, within MPMX20_03259at 3431.173 kb on + strand, within MPMX20_03259at 3431.194 kb on - strand, within MPMX20_03259at 3431.207 kb on + strand, within MPMX20_03259at 3431.311 kb on - strand, within MPMX20_03259at 3431.311 kb on - strand, within MPMX20_03259at 3431.311 kb on - strand, within MPMX20_03259at 3431.395 kb on + strand, within MPMX20_03259at 3431.454 kb on + strand, within MPMX20_03259at 3431.462 kb on - strand, within MPMX20_03259at 3431.469 kb on + strand, within MPMX20_03259at 3431.631 kb on - strandat 3431.660 kb on + strandat 3431.668 kb on - strandat 3431.689 kb on + strandat 3431.689 kb on + strandat 3431.689 kb on + strandat 3431.735 kb on - strandat 3431.833 kb on + strandat 3431.839 kb on + strandat 3431.882 kb on + strand, within MPMX20_03260at 3431.956 kb on - strand, within MPMX20_03260at 3431.969 kb on - strand, within MPMX20_03260at 3431.981 kb on - strand, within MPMX20_03260at 3432.035 kb on - strand, within MPMX20_03260at 3432.035 kb on - strand, within MPMX20_03260at 3432.144 kb on - strandat 3432.151 kb on - strandat 3432.285 kb on - strand, within MPMX20_03261at 3432.295 kb on - strand, within MPMX20_03261at 3432.431 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.460 kb on - strand, within MPMX20_03261at 3432.460 kb on - strand, within MPMX20_03261at 3432.460 kb on - strand, within MPMX20_03261at 3432.462 kb on - strand, within MPMX20_03261at 3432.514 kb on + strand, within MPMX20_03261at 3432.565 kb on + strand, within MPMX20_03261at 3432.573 kb on - strand, within MPMX20_03261at 3432.656 kb on - strandat 3432.675 kb on - strandat 3432.676 kb on - strandat 3432.676 kb on - strandat 3432.690 kb on - strandat 3432.703 kb on + strandat 3432.713 kb on + strandat 3432.726 kb on - strandat 3432.962 kb on + strand, within MPMX20_03262at 3432.964 kb on - strand, within MPMX20_03262at 3433.058 kb on + strand, within MPMX20_03262at 3433.058 kb on + strand, within MPMX20_03262

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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3,430,834 - MPMX20_03259 0.54 +0.1
3,430,839 - MPMX20_03259 0.54 -1.2
3,430,847 + MPMX20_03259 0.54 -1.0
3,431,022 - MPMX20_03259 0.63 -1.0
3,431,138 + MPMX20_03259 0.69 +0.0
3,431,146 - MPMX20_03259 0.69 -1.5
3,431,162 + MPMX20_03259 0.70 +0.7
3,431,173 + MPMX20_03259 0.70 +0.1
3,431,194 - MPMX20_03259 0.72 -0.5
3,431,207 + MPMX20_03259 0.72 -0.6
3,431,311 - MPMX20_03259 0.77 -0.8
3,431,311 - MPMX20_03259 0.77 +0.7
3,431,311 - MPMX20_03259 0.77 +0.4
3,431,395 + MPMX20_03259 0.82 -1.2
3,431,454 + MPMX20_03259 0.85 -0.4
3,431,462 - MPMX20_03259 0.85 +0.2
3,431,469 + MPMX20_03259 0.85 +1.4
3,431,631 - -0.8
3,431,660 + -0.4
3,431,668 - -1.0
3,431,689 + +0.6
3,431,689 + +0.8
3,431,689 + -1.1
3,431,735 - +0.7
3,431,833 + +0.1
3,431,839 + +0.2
3,431,882 + MPMX20_03260 0.25 -1.8
3,431,956 - MPMX20_03260 0.51 +0.1
3,431,969 - MPMX20_03260 0.56 -0.5
3,431,981 - MPMX20_03260 0.60 -1.5
3,432,035 - MPMX20_03260 0.80 +0.5
3,432,035 - MPMX20_03260 0.80 -1.0
3,432,144 - +0.0
3,432,151 - -1.5
3,432,285 - MPMX20_03261 0.33 +1.2
3,432,295 - MPMX20_03261 0.35 +1.2
3,432,431 + MPMX20_03261 0.60 -0.1
3,432,452 + MPMX20_03261 0.64 -1.1
3,432,452 + MPMX20_03261 0.64 -1.6
3,432,452 + MPMX20_03261 0.64 +0.9
3,432,452 + MPMX20_03261 0.64 +0.5
3,432,452 + MPMX20_03261 0.64 -0.2
3,432,452 + MPMX20_03261 0.64 -1.1
3,432,460 - MPMX20_03261 0.65 -0.4
3,432,460 - MPMX20_03261 0.65 +1.5
3,432,460 - MPMX20_03261 0.65 +1.2
3,432,462 - MPMX20_03261 0.65 -0.7
3,432,514 + MPMX20_03261 0.75 -0.8
3,432,565 + MPMX20_03261 0.84 +0.2
3,432,573 - MPMX20_03261 0.86 -1.0
3,432,656 - -2.0
3,432,675 - +0.4
3,432,676 - +0.5
3,432,676 - +0.1
3,432,690 - -0.2
3,432,703 + -1.2
3,432,713 + +0.1
3,432,726 - +0.3
3,432,962 + MPMX20_03262 0.39 -0.3
3,432,964 - MPMX20_03262 0.39 -0.4
3,433,058 + MPMX20_03262 0.50 +0.6
3,433,058 + MPMX20_03262 0.50 +1.2

Or see this region's nucleotide sequence