Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02923

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02921 and MPMX20_02922 are separated by 18 nucleotidesMPMX20_02922 and MPMX20_02923 overlap by 4 nucleotidesMPMX20_02923 and MPMX20_02924 are separated by 2 nucleotidesMPMX20_02924 and MPMX20_02925 overlap by 4 nucleotides MPMX20_02921: MPMX20_02921 - hypothetical protein, at 3,056,989 to 3,057,273 _02921 MPMX20_02922: MPMX20_02922 - hypothetical protein, at 3,057,292 to 3,058,137 _02922 MPMX20_02923: MPMX20_02923 - hypothetical protein, at 3,058,134 to 3,058,814 _02923 MPMX20_02924: MPMX20_02924 - hypothetical protein, at 3,058,817 to 3,059,278 _02924 MPMX20_02925: MPMX20_02925 - hypothetical protein, at 3,059,275 to 3,061,236 _02925 Position (kb) 3058 3059Strain fitness (log2 ratio) -3 -2 -1 0 1at 3057.158 kb on - strand, within MPMX20_02921at 3057.161 kb on + strand, within MPMX20_02921at 3057.220 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.239 kb on - strand, within MPMX20_02921at 3057.239 kb on - strand, within MPMX20_02921at 3057.243 kb on - strand, within MPMX20_02921at 3057.243 kb on - strand, within MPMX20_02921at 3057.250 kb on - strandat 3057.250 kb on - strandat 3057.257 kb on - strandat 3057.260 kb on - strandat 3057.360 kb on - strandat 3057.372 kb on - strandat 3057.374 kb on + strandat 3057.374 kb on - strandat 3057.450 kb on + strand, within MPMX20_02922at 3057.458 kb on - strand, within MPMX20_02922at 3057.458 kb on - strand, within MPMX20_02922at 3057.571 kb on - strand, within MPMX20_02922at 3057.621 kb on - strand, within MPMX20_02922at 3057.677 kb on - strand, within MPMX20_02922at 3057.681 kb on + strand, within MPMX20_02922at 3057.747 kb on - strand, within MPMX20_02922at 3057.834 kb on + strand, within MPMX20_02922at 3057.842 kb on - strand, within MPMX20_02922at 3057.845 kb on + strand, within MPMX20_02922at 3057.853 kb on - strand, within MPMX20_02922at 3057.858 kb on + strand, within MPMX20_02922at 3057.889 kb on - strand, within MPMX20_02922at 3057.921 kb on - strand, within MPMX20_02922at 3057.970 kb on - strand, within MPMX20_02922at 3058.009 kb on + strand, within MPMX20_02922at 3058.035 kb on - strand, within MPMX20_02922at 3058.064 kb on + strandat 3058.064 kb on + strandat 3058.064 kb on + strandat 3058.064 kb on + strandat 3058.072 kb on - strandat 3058.072 kb on - strandat 3058.072 kb on - strandat 3058.072 kb on - strandat 3058.096 kb on + strandat 3058.105 kb on - strandat 3058.144 kb on + strandat 3058.144 kb on + strandat 3058.149 kb on + strandat 3058.152 kb on - strandat 3058.195 kb on - strandat 3058.234 kb on + strand, within MPMX20_02923at 3058.234 kb on + strand, within MPMX20_02923at 3058.234 kb on + strand, within MPMX20_02923at 3058.234 kb on + strand, within MPMX20_02923at 3058.242 kb on - strand, within MPMX20_02923at 3058.272 kb on + strand, within MPMX20_02923at 3058.280 kb on - strand, within MPMX20_02923at 3058.325 kb on + strand, within MPMX20_02923at 3058.334 kb on - strand, within MPMX20_02923at 3058.349 kb on + strand, within MPMX20_02923at 3058.349 kb on + strand, within MPMX20_02923at 3058.350 kb on - strand, within MPMX20_02923at 3058.350 kb on - strand, within MPMX20_02923at 3058.357 kb on - strand, within MPMX20_02923at 3058.357 kb on - strand, within MPMX20_02923at 3058.357 kb on - strand, within MPMX20_02923at 3058.362 kb on + strand, within MPMX20_02923at 3058.367 kb on + strand, within MPMX20_02923at 3058.367 kb on + strand, within MPMX20_02923at 3058.367 kb on + strand, within MPMX20_02923at 3058.367 kb on + strand, within MPMX20_02923at 3058.370 kb on - strand, within MPMX20_02923at 3058.370 kb on - strand, within MPMX20_02923at 3058.375 kb on - strand, within MPMX20_02923at 3058.375 kb on - strand, within MPMX20_02923at 3058.380 kb on - strand, within MPMX20_02923at 3058.390 kb on - strand, within MPMX20_02923at 3058.404 kb on - strand, within MPMX20_02923at 3058.412 kb on + strand, within MPMX20_02923at 3058.412 kb on - strand, within MPMX20_02923at 3058.439 kb on + strand, within MPMX20_02923at 3058.441 kb on + strand, within MPMX20_02923at 3058.441 kb on + strand, within MPMX20_02923at 3058.441 kb on + strand, within MPMX20_02923at 3058.441 kb on + strand, within MPMX20_02923at 3058.454 kb on - strand, within MPMX20_02923at 3058.496 kb on + strand, within MPMX20_02923at 3058.530 kb on + strand, within MPMX20_02923at 3058.605 kb on + strand, within MPMX20_02923at 3058.613 kb on - strand, within MPMX20_02923at 3058.615 kb on + strand, within MPMX20_02923at 3058.623 kb on - strand, within MPMX20_02923at 3058.654 kb on + strand, within MPMX20_02923at 3058.654 kb on + strand, within MPMX20_02923at 3058.654 kb on + strand, within MPMX20_02923at 3058.662 kb on - strand, within MPMX20_02923at 3058.662 kb on - strand, within MPMX20_02923at 3058.662 kb on - strand, within MPMX20_02923at 3058.681 kb on - strand, within MPMX20_02923at 3058.911 kb on + strand, within MPMX20_02924at 3059.060 kb on - strand, within MPMX20_02924at 3059.077 kb on + strand, within MPMX20_02924at 3059.077 kb on + strand, within MPMX20_02924at 3059.129 kb on + strand, within MPMX20_02924at 3059.135 kb on - strand, within MPMX20_02924at 3059.137 kb on - strand, within MPMX20_02924at 3059.193 kb on + strand, within MPMX20_02924at 3059.193 kb on + strand, within MPMX20_02924at 3059.193 kb on + strand, within MPMX20_02924at 3059.201 kb on - strand, within MPMX20_02924at 3059.201 kb on - strand, within MPMX20_02924at 3059.201 kb on - strand, within MPMX20_02924at 3059.201 kb on - strand, within MPMX20_02924at 3059.201 kb on - strand, within MPMX20_02924at 3059.201 kb on - strand, within MPMX20_02924at 3059.203 kb on + strand, within MPMX20_02924at 3059.203 kb on + strand, within MPMX20_02924at 3059.203 kb on + strand, within MPMX20_02924at 3059.407 kb on + strandat 3059.408 kb on + strandat 3059.445 kb on + strandat 3059.455 kb on + strandat 3059.476 kb on - strand, within MPMX20_02925at 3059.484 kb on - strand, within MPMX20_02925at 3059.494 kb on - strand, within MPMX20_02925at 3059.524 kb on + strand, within MPMX20_02925at 3059.535 kb on + strand, within MPMX20_02925at 3059.558 kb on - strand, within MPMX20_02925at 3059.559 kb on - strand, within MPMX20_02925at 3059.565 kb on - strand, within MPMX20_02925at 3059.580 kb on - strand, within MPMX20_02925at 3059.653 kb on - strand, within MPMX20_02925at 3059.682 kb on - strand, within MPMX20_02925at 3059.768 kb on - strand, within MPMX20_02925

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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3,057,158 - MPMX20_02921 0.59 -1.5
3,057,161 + MPMX20_02921 0.60 +0.1
3,057,220 + MPMX20_02921 0.81 -0.4
3,057,235 + MPMX20_02921 0.86 -2.6
3,057,235 + MPMX20_02921 0.86 +0.3
3,057,235 + MPMX20_02921 0.86 -1.4
3,057,235 + MPMX20_02921 0.86 -0.8
3,057,239 - MPMX20_02921 0.88 -0.5
3,057,239 - MPMX20_02921 0.88 -1.3
3,057,243 - MPMX20_02921 0.89 -1.2
3,057,243 - MPMX20_02921 0.89 -1.8
3,057,250 - -0.0
3,057,250 - -0.5
3,057,257 - -0.7
3,057,260 - -1.6
3,057,360 - -0.3
3,057,372 - -2.1
3,057,374 + -0.3
3,057,374 - -0.1
3,057,450 + MPMX20_02922 0.19 -1.7
3,057,458 - MPMX20_02922 0.20 -1.0
3,057,458 - MPMX20_02922 0.20 -1.1
3,057,571 - MPMX20_02922 0.33 -1.1
3,057,621 - MPMX20_02922 0.39 -0.9
3,057,677 - MPMX20_02922 0.46 -1.5
3,057,681 + MPMX20_02922 0.46 +0.3
3,057,747 - MPMX20_02922 0.54 -1.3
3,057,834 + MPMX20_02922 0.64 -1.2
3,057,842 - MPMX20_02922 0.65 -0.7
3,057,845 + MPMX20_02922 0.65 +0.3
3,057,853 - MPMX20_02922 0.66 -1.0
3,057,858 + MPMX20_02922 0.67 -1.0
3,057,889 - MPMX20_02922 0.71 -0.3
3,057,921 - MPMX20_02922 0.74 -0.6
3,057,970 - MPMX20_02922 0.80 -0.6
3,058,009 + MPMX20_02922 0.85 -0.8
3,058,035 - MPMX20_02922 0.88 -0.7
3,058,064 + -0.7
3,058,064 + +0.4
3,058,064 + -0.8
3,058,064 + -1.4
3,058,072 - -0.6
3,058,072 - -0.8
3,058,072 - -1.4
3,058,072 - -0.4
3,058,096 + -1.0
3,058,105 - -0.8
3,058,144 + -1.7
3,058,144 + -1.1
3,058,149 + -0.4
3,058,152 - -1.5
3,058,195 - -1.4
3,058,234 + MPMX20_02923 0.15 -0.3
3,058,234 + MPMX20_02923 0.15 -1.3
3,058,234 + MPMX20_02923 0.15 +0.8
3,058,234 + MPMX20_02923 0.15 -0.0
3,058,242 - MPMX20_02923 0.16 -0.5
3,058,272 + MPMX20_02923 0.20 -1.6
3,058,280 - MPMX20_02923 0.21 -0.3
3,058,325 + MPMX20_02923 0.28 -0.7
3,058,334 - MPMX20_02923 0.29 -0.9
3,058,349 + MPMX20_02923 0.32 -2.7
3,058,349 + MPMX20_02923 0.32 -1.8
3,058,350 - MPMX20_02923 0.32 -0.6
3,058,350 - MPMX20_02923 0.32 +0.3
3,058,357 - MPMX20_02923 0.33 -0.6
3,058,357 - MPMX20_02923 0.33 -1.0
3,058,357 - MPMX20_02923 0.33 -0.4
3,058,362 + MPMX20_02923 0.33 -3.0
3,058,367 + MPMX20_02923 0.34 -0.6
3,058,367 + MPMX20_02923 0.34 -1.0
3,058,367 + MPMX20_02923 0.34 -0.4
3,058,367 + MPMX20_02923 0.34 -0.7
3,058,370 - MPMX20_02923 0.35 -1.5
3,058,370 - MPMX20_02923 0.35 +0.8
3,058,375 - MPMX20_02923 0.35 -0.8
3,058,375 - MPMX20_02923 0.35 -0.9
3,058,380 - MPMX20_02923 0.36 -0.3
3,058,390 - MPMX20_02923 0.38 -0.9
3,058,404 - MPMX20_02923 0.40 +1.6
3,058,412 + MPMX20_02923 0.41 -0.0
3,058,412 - MPMX20_02923 0.41 -0.3
3,058,439 + MPMX20_02923 0.45 -1.4
3,058,441 + MPMX20_02923 0.45 -0.7
3,058,441 + MPMX20_02923 0.45 -0.9
3,058,441 + MPMX20_02923 0.45 +0.6
3,058,441 + MPMX20_02923 0.45 -1.3
3,058,454 - MPMX20_02923 0.47 +0.2
3,058,496 + MPMX20_02923 0.53 -1.1
3,058,530 + MPMX20_02923 0.58 -0.6
3,058,605 + MPMX20_02923 0.69 -0.4
3,058,613 - MPMX20_02923 0.70 -0.5
3,058,615 + MPMX20_02923 0.71 -1.1
3,058,623 - MPMX20_02923 0.72 -1.6
3,058,654 + MPMX20_02923 0.76 +1.0
3,058,654 + MPMX20_02923 0.76 -0.2
3,058,654 + MPMX20_02923 0.76 -2.4
3,058,662 - MPMX20_02923 0.78 -0.4
3,058,662 - MPMX20_02923 0.78 -1.0
3,058,662 - MPMX20_02923 0.78 -0.2
3,058,681 - MPMX20_02923 0.80 +0.2
3,058,911 + MPMX20_02924 0.20 -0.6
3,059,060 - MPMX20_02924 0.53 -0.7
3,059,077 + MPMX20_02924 0.56 +0.1
3,059,077 + MPMX20_02924 0.56 -1.0
3,059,129 + MPMX20_02924 0.68 -1.0
3,059,135 - MPMX20_02924 0.69 -0.4
3,059,137 - MPMX20_02924 0.69 -1.0
3,059,193 + MPMX20_02924 0.81 -0.8
3,059,193 + MPMX20_02924 0.81 -0.1
3,059,193 + MPMX20_02924 0.81 +0.5
3,059,201 - MPMX20_02924 0.83 -1.1
3,059,201 - MPMX20_02924 0.83 +0.0
3,059,201 - MPMX20_02924 0.83 -0.5
3,059,201 - MPMX20_02924 0.83 -0.8
3,059,201 - MPMX20_02924 0.83 -1.1
3,059,201 - MPMX20_02924 0.83 -0.8
3,059,203 + MPMX20_02924 0.84 -0.7
3,059,203 + MPMX20_02924 0.84 -0.8
3,059,203 + MPMX20_02924 0.84 -0.4
3,059,407 + -1.2
3,059,408 + -1.4
3,059,445 + -1.6
3,059,455 + -1.1
3,059,476 - MPMX20_02925 0.10 -0.2
3,059,484 - MPMX20_02925 0.11 +0.1
3,059,494 - MPMX20_02925 0.11 -0.7
3,059,524 + MPMX20_02925 0.13 -2.6
3,059,535 + MPMX20_02925 0.13 -3.2
3,059,558 - MPMX20_02925 0.14 -0.6
3,059,559 - MPMX20_02925 0.14 -0.8
3,059,565 - MPMX20_02925 0.15 -0.8
3,059,580 - MPMX20_02925 0.16 -0.7
3,059,653 - MPMX20_02925 0.19 -0.9
3,059,682 - MPMX20_02925 0.21 -0.8
3,059,768 - MPMX20_02925 0.25 -0.4

Or see this region's nucleotide sequence