Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02921 and MPMX20_02922 are separated by 18 nucleotides MPMX20_02922 and MPMX20_02923 overlap by 4 nucleotides MPMX20_02923 and MPMX20_02924 are separated by 2 nucleotides MPMX20_02924 and MPMX20_02925 overlap by 4 nucleotides
MPMX20_02921: MPMX20_02921 - hypothetical protein, at 3,056,989 to 3,057,273
_02921
MPMX20_02922: MPMX20_02922 - hypothetical protein, at 3,057,292 to 3,058,137
_02922
MPMX20_02923: MPMX20_02923 - hypothetical protein, at 3,058,134 to 3,058,814
_02923
MPMX20_02924: MPMX20_02924 - hypothetical protein, at 3,058,817 to 3,059,278
_02924
MPMX20_02925: MPMX20_02925 - hypothetical protein, at 3,059,275 to 3,061,236
_02925
Position (kb)
3058
3059 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3057.158 kb on - strand, within MPMX20_02921 at 3057.161 kb on + strand, within MPMX20_02921 at 3057.220 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.239 kb on - strand, within MPMX20_02921 at 3057.239 kb on - strand, within MPMX20_02921 at 3057.243 kb on - strand, within MPMX20_02921 at 3057.243 kb on - strand, within MPMX20_02921 at 3057.250 kb on - strand at 3057.250 kb on - strand at 3057.257 kb on - strand at 3057.260 kb on - strand at 3057.360 kb on - strand at 3057.372 kb on - strand at 3057.374 kb on + strand at 3057.374 kb on - strand at 3057.450 kb on + strand, within MPMX20_02922 at 3057.458 kb on - strand, within MPMX20_02922 at 3057.458 kb on - strand, within MPMX20_02922 at 3057.571 kb on - strand, within MPMX20_02922 at 3057.621 kb on - strand, within MPMX20_02922 at 3057.677 kb on - strand, within MPMX20_02922 at 3057.681 kb on + strand, within MPMX20_02922 at 3057.747 kb on - strand, within MPMX20_02922 at 3057.834 kb on + strand, within MPMX20_02922 at 3057.842 kb on - strand, within MPMX20_02922 at 3057.845 kb on + strand, within MPMX20_02922 at 3057.853 kb on - strand, within MPMX20_02922 at 3057.858 kb on + strand, within MPMX20_02922 at 3057.889 kb on - strand, within MPMX20_02922 at 3057.921 kb on - strand, within MPMX20_02922 at 3057.970 kb on - strand, within MPMX20_02922 at 3058.009 kb on + strand, within MPMX20_02922 at 3058.035 kb on - strand, within MPMX20_02922 at 3058.064 kb on + strand at 3058.064 kb on + strand at 3058.064 kb on + strand at 3058.064 kb on + strand at 3058.072 kb on - strand at 3058.072 kb on - strand at 3058.072 kb on - strand at 3058.072 kb on - strand at 3058.096 kb on + strand at 3058.105 kb on - strand at 3058.144 kb on + strand at 3058.144 kb on + strand at 3058.149 kb on + strand at 3058.152 kb on - strand at 3058.195 kb on - strand at 3058.234 kb on + strand, within MPMX20_02923 at 3058.234 kb on + strand, within MPMX20_02923 at 3058.234 kb on + strand, within MPMX20_02923 at 3058.234 kb on + strand, within MPMX20_02923 at 3058.242 kb on - strand, within MPMX20_02923 at 3058.272 kb on + strand, within MPMX20_02923 at 3058.280 kb on - strand, within MPMX20_02923 at 3058.325 kb on + strand, within MPMX20_02923 at 3058.334 kb on - strand, within MPMX20_02923 at 3058.349 kb on + strand, within MPMX20_02923 at 3058.349 kb on + strand, within MPMX20_02923 at 3058.350 kb on - strand, within MPMX20_02923 at 3058.350 kb on - strand, within MPMX20_02923 at 3058.357 kb on - strand, within MPMX20_02923 at 3058.357 kb on - strand, within MPMX20_02923 at 3058.357 kb on - strand, within MPMX20_02923 at 3058.362 kb on + strand, within MPMX20_02923 at 3058.367 kb on + strand, within MPMX20_02923 at 3058.367 kb on + strand, within MPMX20_02923 at 3058.367 kb on + strand, within MPMX20_02923 at 3058.367 kb on + strand, within MPMX20_02923 at 3058.370 kb on - strand, within MPMX20_02923 at 3058.370 kb on - strand, within MPMX20_02923 at 3058.375 kb on - strand, within MPMX20_02923 at 3058.375 kb on - strand, within MPMX20_02923 at 3058.380 kb on - strand, within MPMX20_02923 at 3058.390 kb on - strand, within MPMX20_02923 at 3058.404 kb on - strand, within MPMX20_02923 at 3058.412 kb on + strand, within MPMX20_02923 at 3058.412 kb on - strand, within MPMX20_02923 at 3058.439 kb on + strand, within MPMX20_02923 at 3058.441 kb on + strand, within MPMX20_02923 at 3058.441 kb on + strand, within MPMX20_02923 at 3058.441 kb on + strand, within MPMX20_02923 at 3058.441 kb on + strand, within MPMX20_02923 at 3058.454 kb on - strand, within MPMX20_02923 at 3058.496 kb on + strand, within MPMX20_02923 at 3058.530 kb on + strand, within MPMX20_02923 at 3058.605 kb on + strand, within MPMX20_02923 at 3058.613 kb on - strand, within MPMX20_02923 at 3058.615 kb on + strand, within MPMX20_02923 at 3058.623 kb on - strand, within MPMX20_02923 at 3058.654 kb on + strand, within MPMX20_02923 at 3058.654 kb on + strand, within MPMX20_02923 at 3058.654 kb on + strand, within MPMX20_02923 at 3058.662 kb on - strand, within MPMX20_02923 at 3058.662 kb on - strand, within MPMX20_02923 at 3058.662 kb on - strand, within MPMX20_02923 at 3058.681 kb on - strand, within MPMX20_02923 at 3058.911 kb on + strand, within MPMX20_02924 at 3059.060 kb on - strand, within MPMX20_02924 at 3059.077 kb on + strand, within MPMX20_02924 at 3059.077 kb on + strand, within MPMX20_02924 at 3059.129 kb on + strand, within MPMX20_02924 at 3059.135 kb on - strand, within MPMX20_02924 at 3059.137 kb on - strand, within MPMX20_02924 at 3059.193 kb on + strand, within MPMX20_02924 at 3059.193 kb on + strand, within MPMX20_02924 at 3059.193 kb on + strand, within MPMX20_02924 at 3059.201 kb on - strand, within MPMX20_02924 at 3059.201 kb on - strand, within MPMX20_02924 at 3059.201 kb on - strand, within MPMX20_02924 at 3059.201 kb on - strand, within MPMX20_02924 at 3059.201 kb on - strand, within MPMX20_02924 at 3059.201 kb on - strand, within MPMX20_02924 at 3059.203 kb on + strand, within MPMX20_02924 at 3059.203 kb on + strand, within MPMX20_02924 at 3059.203 kb on + strand, within MPMX20_02924 at 3059.407 kb on + strand at 3059.408 kb on + strand at 3059.445 kb on + strand at 3059.455 kb on + strand at 3059.476 kb on - strand, within MPMX20_02925 at 3059.484 kb on - strand, within MPMX20_02925 at 3059.494 kb on - strand, within MPMX20_02925 at 3059.524 kb on + strand, within MPMX20_02925 at 3059.535 kb on + strand, within MPMX20_02925 at 3059.558 kb on - strand, within MPMX20_02925 at 3059.559 kb on - strand, within MPMX20_02925 at 3059.565 kb on - strand, within MPMX20_02925 at 3059.580 kb on - strand, within MPMX20_02925 at 3059.653 kb on - strand, within MPMX20_02925 at 3059.682 kb on - strand, within MPMX20_02925 at 3059.768 kb on - strand, within MPMX20_02925
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 3,057,158 - MPMX20_02921 0.59 -1.5 3,057,161 + MPMX20_02921 0.60 +0.1 3,057,220 + MPMX20_02921 0.81 -0.4 3,057,235 + MPMX20_02921 0.86 -2.6 3,057,235 + MPMX20_02921 0.86 +0.3 3,057,235 + MPMX20_02921 0.86 -1.4 3,057,235 + MPMX20_02921 0.86 -0.8 3,057,239 - MPMX20_02921 0.88 -0.5 3,057,239 - MPMX20_02921 0.88 -1.3 3,057,243 - MPMX20_02921 0.89 -1.2 3,057,243 - MPMX20_02921 0.89 -1.8 3,057,250 - -0.0 3,057,250 - -0.5 3,057,257 - -0.7 3,057,260 - -1.6 3,057,360 - -0.3 3,057,372 - -2.1 3,057,374 + -0.3 3,057,374 - -0.1 3,057,450 + MPMX20_02922 0.19 -1.7 3,057,458 - MPMX20_02922 0.20 -1.0 3,057,458 - MPMX20_02922 0.20 -1.1 3,057,571 - MPMX20_02922 0.33 -1.1 3,057,621 - MPMX20_02922 0.39 -0.9 3,057,677 - MPMX20_02922 0.46 -1.5 3,057,681 + MPMX20_02922 0.46 +0.3 3,057,747 - MPMX20_02922 0.54 -1.3 3,057,834 + MPMX20_02922 0.64 -1.2 3,057,842 - MPMX20_02922 0.65 -0.7 3,057,845 + MPMX20_02922 0.65 +0.3 3,057,853 - MPMX20_02922 0.66 -1.0 3,057,858 + MPMX20_02922 0.67 -1.0 3,057,889 - MPMX20_02922 0.71 -0.3 3,057,921 - MPMX20_02922 0.74 -0.6 3,057,970 - MPMX20_02922 0.80 -0.6 3,058,009 + MPMX20_02922 0.85 -0.8 3,058,035 - MPMX20_02922 0.88 -0.7 3,058,064 + -0.7 3,058,064 + +0.4 3,058,064 + -0.8 3,058,064 + -1.4 3,058,072 - -0.6 3,058,072 - -0.8 3,058,072 - -1.4 3,058,072 - -0.4 3,058,096 + -1.0 3,058,105 - -0.8 3,058,144 + -1.7 3,058,144 + -1.1 3,058,149 + -0.4 3,058,152 - -1.5 3,058,195 - -1.4 3,058,234 + MPMX20_02923 0.15 -0.3 3,058,234 + MPMX20_02923 0.15 -1.3 3,058,234 + MPMX20_02923 0.15 +0.8 3,058,234 + MPMX20_02923 0.15 -0.0 3,058,242 - MPMX20_02923 0.16 -0.5 3,058,272 + MPMX20_02923 0.20 -1.6 3,058,280 - MPMX20_02923 0.21 -0.3 3,058,325 + MPMX20_02923 0.28 -0.7 3,058,334 - MPMX20_02923 0.29 -0.9 3,058,349 + MPMX20_02923 0.32 -2.7 3,058,349 + MPMX20_02923 0.32 -1.8 3,058,350 - MPMX20_02923 0.32 -0.6 3,058,350 - MPMX20_02923 0.32 +0.3 3,058,357 - MPMX20_02923 0.33 -0.6 3,058,357 - MPMX20_02923 0.33 -1.0 3,058,357 - MPMX20_02923 0.33 -0.4 3,058,362 + MPMX20_02923 0.33 -3.0 3,058,367 + MPMX20_02923 0.34 -0.6 3,058,367 + MPMX20_02923 0.34 -1.0 3,058,367 + MPMX20_02923 0.34 -0.4 3,058,367 + MPMX20_02923 0.34 -0.7 3,058,370 - MPMX20_02923 0.35 -1.5 3,058,370 - MPMX20_02923 0.35 +0.8 3,058,375 - MPMX20_02923 0.35 -0.8 3,058,375 - MPMX20_02923 0.35 -0.9 3,058,380 - MPMX20_02923 0.36 -0.3 3,058,390 - MPMX20_02923 0.38 -0.9 3,058,404 - MPMX20_02923 0.40 +1.6 3,058,412 + MPMX20_02923 0.41 -0.0 3,058,412 - MPMX20_02923 0.41 -0.3 3,058,439 + MPMX20_02923 0.45 -1.4 3,058,441 + MPMX20_02923 0.45 -0.7 3,058,441 + MPMX20_02923 0.45 -0.9 3,058,441 + MPMX20_02923 0.45 +0.6 3,058,441 + MPMX20_02923 0.45 -1.3 3,058,454 - MPMX20_02923 0.47 +0.2 3,058,496 + MPMX20_02923 0.53 -1.1 3,058,530 + MPMX20_02923 0.58 -0.6 3,058,605 + MPMX20_02923 0.69 -0.4 3,058,613 - MPMX20_02923 0.70 -0.5 3,058,615 + MPMX20_02923 0.71 -1.1 3,058,623 - MPMX20_02923 0.72 -1.6 3,058,654 + MPMX20_02923 0.76 +1.0 3,058,654 + MPMX20_02923 0.76 -0.2 3,058,654 + MPMX20_02923 0.76 -2.4 3,058,662 - MPMX20_02923 0.78 -0.4 3,058,662 - MPMX20_02923 0.78 -1.0 3,058,662 - MPMX20_02923 0.78 -0.2 3,058,681 - MPMX20_02923 0.80 +0.2 3,058,911 + MPMX20_02924 0.20 -0.6 3,059,060 - MPMX20_02924 0.53 -0.7 3,059,077 + MPMX20_02924 0.56 +0.1 3,059,077 + MPMX20_02924 0.56 -1.0 3,059,129 + MPMX20_02924 0.68 -1.0 3,059,135 - MPMX20_02924 0.69 -0.4 3,059,137 - MPMX20_02924 0.69 -1.0 3,059,193 + MPMX20_02924 0.81 -0.8 3,059,193 + MPMX20_02924 0.81 -0.1 3,059,193 + MPMX20_02924 0.81 +0.5 3,059,201 - MPMX20_02924 0.83 -1.1 3,059,201 - MPMX20_02924 0.83 +0.0 3,059,201 - MPMX20_02924 0.83 -0.5 3,059,201 - MPMX20_02924 0.83 -0.8 3,059,201 - MPMX20_02924 0.83 -1.1 3,059,201 - MPMX20_02924 0.83 -0.8 3,059,203 + MPMX20_02924 0.84 -0.7 3,059,203 + MPMX20_02924 0.84 -0.8 3,059,203 + MPMX20_02924 0.84 -0.4 3,059,407 + -1.2 3,059,408 + -1.4 3,059,445 + -1.6 3,059,455 + -1.1 3,059,476 - MPMX20_02925 0.10 -0.2 3,059,484 - MPMX20_02925 0.11 +0.1 3,059,494 - MPMX20_02925 0.11 -0.7 3,059,524 + MPMX20_02925 0.13 -2.6 3,059,535 + MPMX20_02925 0.13 -3.2 3,059,558 - MPMX20_02925 0.14 -0.6 3,059,559 - MPMX20_02925 0.14 -0.8 3,059,565 - MPMX20_02925 0.15 -0.8 3,059,580 - MPMX20_02925 0.16 -0.7 3,059,653 - MPMX20_02925 0.19 -0.9 3,059,682 - MPMX20_02925 0.21 -0.8 3,059,768 - MPMX20_02925 0.25 -0.4
Or see this region's nucleotide sequence