Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02902

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02899 and MPMX20_02900 overlap by 4 nucleotidesMPMX20_02900 and MPMX20_02901 overlap by 4 nucleotidesMPMX20_02901 and MPMX20_02902 overlap by 8 nucleotidesMPMX20_02902 and MPMX20_02903 overlap by 4 nucleotidesMPMX20_02903 and MPMX20_02904 overlap by 1 nucleotidesMPMX20_02904 and MPMX20_02905 are separated by 186 nucleotides MPMX20_02899: MPMX20_02899 - hypothetical protein, at 3,045,646 to 3,046,335 _02899 MPMX20_02900: MPMX20_02900 - putative protein YlcG, at 3,046,332 to 3,046,472 _02900 MPMX20_02901: MPMX20_02901 - hypothetical protein, at 3,046,469 to 3,047,080 _02901 MPMX20_02902: MPMX20_02902 - Serine/threonine-protein phosphatase 1, at 3,047,073 to 3,047,741 _02902 MPMX20_02903: MPMX20_02903 - hypothetical protein, at 3,047,738 to 3,047,908 _02903 MPMX20_02904: MPMX20_02904 - hypothetical protein, at 3,047,908 to 3,048,363 _02904 MPMX20_02905: MPMX20_02905 - hypothetical protein, at 3,048,550 to 3,049,257 _02905 Position (kb) 3047 3048Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3046.073 kb on - strand, within MPMX20_02899at 3046.109 kb on + strand, within MPMX20_02899at 3046.126 kb on + strand, within MPMX20_02899at 3046.273 kb on + strandat 3046.286 kb on - strandat 3046.286 kb on - strandat 3046.476 kb on + strandat 3046.506 kb on + strandat 3046.509 kb on - strandat 3046.514 kb on - strandat 3046.514 kb on - strandat 3046.527 kb on + strandat 3046.545 kb on - strand, within MPMX20_02901at 3046.615 kb on - strand, within MPMX20_02901at 3046.627 kb on + strand, within MPMX20_02901at 3046.627 kb on + strand, within MPMX20_02901at 3046.635 kb on - strand, within MPMX20_02901at 3046.665 kb on - strand, within MPMX20_02901at 3046.671 kb on + strand, within MPMX20_02901at 3046.672 kb on - strand, within MPMX20_02901at 3046.697 kb on + strand, within MPMX20_02901at 3046.699 kb on + strand, within MPMX20_02901at 3046.699 kb on + strand, within MPMX20_02901at 3046.707 kb on - strand, within MPMX20_02901at 3046.768 kb on + strand, within MPMX20_02901at 3046.776 kb on - strand, within MPMX20_02901at 3046.785 kb on + strand, within MPMX20_02901at 3046.862 kb on - strand, within MPMX20_02901at 3046.881 kb on - strand, within MPMX20_02901at 3046.881 kb on - strand, within MPMX20_02901at 3046.918 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.975 kb on + strand, within MPMX20_02901at 3046.983 kb on - strand, within MPMX20_02901at 3046.987 kb on + strand, within MPMX20_02901at 3046.993 kb on - strand, within MPMX20_02901at 3046.995 kb on - strand, within MPMX20_02901at 3047.044 kb on - strandat 3047.088 kb on + strandat 3047.089 kb on + strandat 3047.097 kb on - strandat 3047.097 kb on - strandat 3047.097 kb on - strandat 3047.168 kb on - strand, within MPMX20_02902at 3047.209 kb on + strand, within MPMX20_02902at 3047.235 kb on - strand, within MPMX20_02902at 3047.249 kb on + strand, within MPMX20_02902at 3047.249 kb on + strand, within MPMX20_02902at 3047.313 kb on + strand, within MPMX20_02902at 3047.401 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.563 kb on - strand, within MPMX20_02902at 3047.563 kb on - strand, within MPMX20_02902at 3047.624 kb on - strand, within MPMX20_02902at 3047.655 kb on + strand, within MPMX20_02902at 3047.663 kb on + strand, within MPMX20_02902at 3047.681 kb on - strandat 3047.745 kb on + strandat 3047.796 kb on + strand, within MPMX20_02903at 3047.827 kb on + strand, within MPMX20_02903at 3047.896 kb on + strandat 3047.899 kb on - strandat 3047.899 kb on - strandat 3047.914 kb on - strandat 3047.940 kb on + strandat 3047.960 kb on + strand, within MPMX20_02904at 3047.967 kb on - strand, within MPMX20_02904at 3047.997 kb on - strand, within MPMX20_02904at 3048.014 kb on - strand, within MPMX20_02904at 3048.018 kb on + strand, within MPMX20_02904at 3048.084 kb on + strand, within MPMX20_02904at 3048.084 kb on + strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.097 kb on - strand, within MPMX20_02904at 3048.097 kb on - strand, within MPMX20_02904at 3048.118 kb on + strand, within MPMX20_02904at 3048.126 kb on - strand, within MPMX20_02904at 3048.142 kb on - strand, within MPMX20_02904at 3048.169 kb on - strand, within MPMX20_02904at 3048.169 kb on - strand, within MPMX20_02904at 3048.212 kb on - strand, within MPMX20_02904at 3048.253 kb on - strand, within MPMX20_02904at 3048.253 kb on - strand, within MPMX20_02904at 3048.259 kb on - strand, within MPMX20_02904at 3048.259 kb on - strand, within MPMX20_02904at 3048.379 kb on - strandat 3048.429 kb on + strandat 3048.464 kb on + strandat 3048.493 kb on + strandat 3048.496 kb on - strandat 3048.501 kb on - strandat 3048.569 kb on + strandat 3048.569 kb on + strandat 3048.569 kb on + strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.584 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.625 kb on + strand, within MPMX20_02905at 3048.643 kb on - strand, within MPMX20_02905at 3048.659 kb on - strand, within MPMX20_02905at 3048.659 kb on - strand, within MPMX20_02905at 3048.672 kb on + strand, within MPMX20_02905at 3048.740 kb on - strand, within MPMX20_02905at 3048.740 kb on - strand, within MPMX20_02905

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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3,046,073 - MPMX20_02899 0.62 -0.3
3,046,109 + MPMX20_02899 0.67 +0.7
3,046,126 + MPMX20_02899 0.70 +2.2
3,046,273 + +0.3
3,046,286 - -0.2
3,046,286 - +0.2
3,046,476 + +1.8
3,046,506 + -1.4
3,046,509 - +0.7
3,046,514 - -1.1
3,046,514 - -0.8
3,046,527 + -0.5
3,046,545 - MPMX20_02901 0.12 -1.8
3,046,615 - MPMX20_02901 0.24 -0.2
3,046,627 + MPMX20_02901 0.26 -0.8
3,046,627 + MPMX20_02901 0.26 -1.4
3,046,635 - MPMX20_02901 0.27 -0.9
3,046,665 - MPMX20_02901 0.32 -0.9
3,046,671 + MPMX20_02901 0.33 -2.3
3,046,672 - MPMX20_02901 0.33 -0.6
3,046,697 + MPMX20_02901 0.37 -1.9
3,046,699 + MPMX20_02901 0.38 -1.1
3,046,699 + MPMX20_02901 0.38 -0.9
3,046,707 - MPMX20_02901 0.39 -0.7
3,046,768 + MPMX20_02901 0.49 -2.1
3,046,776 - MPMX20_02901 0.50 +0.2
3,046,785 + MPMX20_02901 0.52 -1.2
3,046,862 - MPMX20_02901 0.64 -1.1
3,046,881 - MPMX20_02901 0.67 -1.7
3,046,881 - MPMX20_02901 0.67 -1.9
3,046,918 + MPMX20_02901 0.73 -1.2
3,046,938 + MPMX20_02901 0.77 -0.1
3,046,938 + MPMX20_02901 0.77 -1.4
3,046,938 + MPMX20_02901 0.77 -1.4
3,046,946 - MPMX20_02901 0.78 -0.4
3,046,946 - MPMX20_02901 0.78 -2.1
3,046,946 - MPMX20_02901 0.78 -1.2
3,046,946 - MPMX20_02901 0.78 -2.3
3,046,946 - MPMX20_02901 0.78 -1.5
3,046,946 - MPMX20_02901 0.78 -0.3
3,046,946 - MPMX20_02901 0.78 -1.8
3,046,975 + MPMX20_02901 0.83 -1.2
3,046,983 - MPMX20_02901 0.84 +0.2
3,046,987 + MPMX20_02901 0.85 -1.9
3,046,993 - MPMX20_02901 0.86 -2.6
3,046,995 - MPMX20_02901 0.86 +0.2
3,047,044 - -0.2
3,047,088 + -2.0
3,047,089 + -0.4
3,047,097 - -1.2
3,047,097 - -0.6
3,047,097 - -2.2
3,047,168 - MPMX20_02902 0.14 +0.8
3,047,209 + MPMX20_02902 0.20 -2.4
3,047,235 - MPMX20_02902 0.24 -0.8
3,047,249 + MPMX20_02902 0.26 -1.5
3,047,249 + MPMX20_02902 0.26 -1.7
3,047,313 + MPMX20_02902 0.36 +0.1
3,047,401 + MPMX20_02902 0.49 -0.1
3,047,530 + MPMX20_02902 0.68 -1.3
3,047,530 + MPMX20_02902 0.68 -0.6
3,047,530 + MPMX20_02902 0.68 -0.9
3,047,530 + MPMX20_02902 0.68 -1.0
3,047,530 + MPMX20_02902 0.68 -0.5
3,047,530 + MPMX20_02902 0.68 +1.9
3,047,530 + MPMX20_02902 0.68 -1.2
3,047,538 - MPMX20_02902 0.70 -1.4
3,047,538 - MPMX20_02902 0.70 -0.6
3,047,538 - MPMX20_02902 0.70 -1.4
3,047,538 - MPMX20_02902 0.70 -0.4
3,047,563 - MPMX20_02902 0.73 +0.1
3,047,563 - MPMX20_02902 0.73 -0.7
3,047,624 - MPMX20_02902 0.82 +0.3
3,047,655 + MPMX20_02902 0.87 +0.8
3,047,663 + MPMX20_02902 0.88 -0.7
3,047,681 - -0.1
3,047,745 + -1.3
3,047,796 + MPMX20_02903 0.34 -0.9
3,047,827 + MPMX20_02903 0.52 -0.4
3,047,896 + -0.5
3,047,899 - -1.0
3,047,899 - -0.7
3,047,914 - +0.1
3,047,940 + -1.3
3,047,960 + MPMX20_02904 0.11 -0.4
3,047,967 - MPMX20_02904 0.13 -0.4
3,047,997 - MPMX20_02904 0.20 -0.3
3,048,014 - MPMX20_02904 0.23 +0.6
3,048,018 + MPMX20_02904 0.24 +0.3
3,048,084 + MPMX20_02904 0.39 -0.7
3,048,084 + MPMX20_02904 0.39 -1.0
3,048,092 - MPMX20_02904 0.40 -0.7
3,048,092 - MPMX20_02904 0.40 -0.8
3,048,092 - MPMX20_02904 0.40 -0.1
3,048,092 - MPMX20_02904 0.40 -0.8
3,048,097 - MPMX20_02904 0.41 -1.1
3,048,097 - MPMX20_02904 0.41 +1.9
3,048,118 + MPMX20_02904 0.46 -1.1
3,048,126 - MPMX20_02904 0.48 -0.7
3,048,142 - MPMX20_02904 0.51 -0.5
3,048,169 - MPMX20_02904 0.57 -1.2
3,048,169 - MPMX20_02904 0.57 -0.2
3,048,212 - MPMX20_02904 0.67 -0.5
3,048,253 - MPMX20_02904 0.76 -0.3
3,048,253 - MPMX20_02904 0.76 -0.4
3,048,259 - MPMX20_02904 0.77 -0.8
3,048,259 - MPMX20_02904 0.77 -1.8
3,048,379 - -0.1
3,048,429 + -0.9
3,048,464 + -1.6
3,048,493 + -0.3
3,048,496 - -1.0
3,048,501 - +0.2
3,048,569 + -0.5
3,048,569 + -0.6
3,048,569 + -0.4
3,048,577 - +1.1
3,048,577 - -2.9
3,048,577 - +1.9
3,048,577 - -1.1
3,048,584 + -0.7
3,048,594 + -0.5
3,048,594 + -0.5
3,048,594 + -0.5
3,048,594 + -0.7
3,048,594 + -0.7
3,048,602 - -0.6
3,048,602 - -0.7
3,048,602 - -0.1
3,048,602 - -0.4
3,048,625 + MPMX20_02905 0.11 -0.3
3,048,643 - MPMX20_02905 0.13 -1.3
3,048,659 - MPMX20_02905 0.15 -0.6
3,048,659 - MPMX20_02905 0.15 -0.7
3,048,672 + MPMX20_02905 0.17 -1.3
3,048,740 - MPMX20_02905 0.27 -1.0
3,048,740 - MPMX20_02905 0.27 -0.6

Or see this region's nucleotide sequence