Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02756 and MPMX20_02757 are separated by 234 nucleotides MPMX20_02757 and MPMX20_02758 are separated by 339 nucleotides
MPMX20_02756: MPMX20_02756 - Phosphogluconate dehydratase, at 2,910,290 to 2,912,101
_02756
MPMX20_02757: MPMX20_02757 - Glucose-6-phosphate 1-dehydrogenase, at 2,912,336 to 2,913,811
_02757
MPMX20_02758: MPMX20_02758 - HTH-type transcriptional regulator HexR, at 2,914,151 to 2,915,038
_02758
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2911.362 kb on + strand, within MPMX20_02756 at 2911.416 kb on + strand, within MPMX20_02756 at 2911.419 kb on - strand, within MPMX20_02756 at 2911.423 kb on - strand, within MPMX20_02756 at 2911.497 kb on + strand, within MPMX20_02756 at 2911.497 kb on + strand, within MPMX20_02756 at 2911.505 kb on - strand, within MPMX20_02756 at 2911.505 kb on - strand, within MPMX20_02756 at 2911.505 kb on - strand, within MPMX20_02756 at 2911.611 kb on + strand, within MPMX20_02756 at 2911.611 kb on + strand, within MPMX20_02756 at 2911.622 kb on + strand, within MPMX20_02756 at 2911.676 kb on - strand, within MPMX20_02756 at 2911.684 kb on + strand, within MPMX20_02756 at 2911.718 kb on + strand, within MPMX20_02756 at 2911.723 kb on + strand, within MPMX20_02756 at 2911.726 kb on - strand, within MPMX20_02756 at 2911.726 kb on - strand, within MPMX20_02756 at 2911.732 kb on + strand, within MPMX20_02756 at 2911.737 kb on + strand, within MPMX20_02756 at 2911.745 kb on - strand, within MPMX20_02756 at 2911.812 kb on - strand, within MPMX20_02756 at 2911.976 kb on - strand at 2911.979 kb on + strand at 2912.009 kb on - strand at 2912.017 kb on + strand at 2912.053 kb on - strand at 2912.053 kb on - strand at 2912.053 kb on - strand at 2912.355 kb on - strand at 2912.355 kb on - strand at 2912.355 kb on - strand at 2912.357 kb on - strand at 2912.357 kb on - strand at 2912.357 kb on - strand at 2912.377 kb on - strand at 2912.395 kb on + strand at 2912.395 kb on + strand at 2912.403 kb on - strand at 2912.403 kb on - strand at 2912.403 kb on - strand at 2912.442 kb on + strand at 2912.562 kb on - strand, within MPMX20_02757 at 2912.602 kb on + strand, within MPMX20_02757 at 2912.770 kb on + strand, within MPMX20_02757 at 2912.922 kb on + strand, within MPMX20_02757 at 2912.951 kb on - strand, within MPMX20_02757 at 2913.124 kb on - strand, within MPMX20_02757 at 2913.130 kb on + strand, within MPMX20_02757 at 2913.135 kb on + strand, within MPMX20_02757 at 2913.254 kb on + strand, within MPMX20_02757 at 2913.262 kb on - strand, within MPMX20_02757 at 2913.296 kb on + strand, within MPMX20_02757 at 2913.355 kb on - strand, within MPMX20_02757 at 2913.424 kb on - strand, within MPMX20_02757 at 2913.535 kb on + strand, within MPMX20_02757 at 2913.623 kb on + strand, within MPMX20_02757 at 2913.672 kb on - strand at 2913.785 kb on + strand at 2913.793 kb on - strand at 2913.793 kb on - strand at 2913.834 kb on + strand at 2913.834 kb on + strand at 2913.878 kb on - strand at 2913.883 kb on - strand at 2913.888 kb on - strand at 2913.888 kb on - strand at 2913.893 kb on - strand at 2913.912 kb on + strand at 2913.920 kb on - strand at 2914.019 kb on + strand at 2914.020 kb on - strand at 2914.062 kb on + strand at 2914.063 kb on + strand at 2914.068 kb on + strand at 2914.076 kb on - strand at 2914.076 kb on - strand at 2914.102 kb on - strand at 2914.153 kb on - strand at 2914.159 kb on + strand at 2914.199 kb on + strand at 2914.268 kb on + strand, within MPMX20_02758 at 2914.302 kb on - strand, within MPMX20_02758 at 2914.447 kb on - strand, within MPMX20_02758 at 2914.486 kb on + strand, within MPMX20_02758 at 2914.491 kb on + strand, within MPMX20_02758 at 2914.653 kb on + strand, within MPMX20_02758 at 2914.675 kb on - strand, within MPMX20_02758 at 2914.675 kb on - strand, within MPMX20_02758 at 2914.711 kb on - strand, within MPMX20_02758 at 2914.781 kb on + strand, within MPMX20_02758
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 2,911,362 + MPMX20_02756 0.59 -1.0 2,911,416 + MPMX20_02756 0.62 +1.3 2,911,419 - MPMX20_02756 0.62 -0.1 2,911,423 - MPMX20_02756 0.63 -0.5 2,911,497 + MPMX20_02756 0.67 +0.4 2,911,497 + MPMX20_02756 0.67 -0.4 2,911,505 - MPMX20_02756 0.67 +1.1 2,911,505 - MPMX20_02756 0.67 +0.2 2,911,505 - MPMX20_02756 0.67 +0.5 2,911,611 + MPMX20_02756 0.73 -1.1 2,911,611 + MPMX20_02756 0.73 +0.0 2,911,622 + MPMX20_02756 0.74 -0.4 2,911,676 - MPMX20_02756 0.76 +0.5 2,911,684 + MPMX20_02756 0.77 +0.0 2,911,718 + MPMX20_02756 0.79 +0.2 2,911,723 + MPMX20_02756 0.79 +0.1 2,911,726 - MPMX20_02756 0.79 +0.2 2,911,726 - MPMX20_02756 0.79 -0.5 2,911,732 + MPMX20_02756 0.80 -0.5 2,911,737 + MPMX20_02756 0.80 +0.5 2,911,745 - MPMX20_02756 0.80 +0.0 2,911,812 - MPMX20_02756 0.84 +0.8 2,911,976 - -1.2 2,911,979 + +0.5 2,912,009 - -0.2 2,912,017 + +0.9 2,912,053 - -0.2 2,912,053 - +0.2 2,912,053 - +0.5 2,912,355 - +1.8 2,912,355 - +0.3 2,912,355 - +2.2 2,912,357 - -0.4 2,912,357 - +1.5 2,912,357 - -1.0 2,912,377 - -2.4 2,912,395 + +0.9 2,912,395 + -0.1 2,912,403 - -0.3 2,912,403 - -0.3 2,912,403 - -0.7 2,912,442 + +0.2 2,912,562 - MPMX20_02757 0.15 -2.9 2,912,602 + MPMX20_02757 0.18 +1.5 2,912,770 + MPMX20_02757 0.29 -1.5 2,912,922 + MPMX20_02757 0.40 +1.8 2,912,951 - MPMX20_02757 0.42 -2.0 2,913,124 - MPMX20_02757 0.53 -1.2 2,913,130 + MPMX20_02757 0.54 +0.8 2,913,135 + MPMX20_02757 0.54 -1.5 2,913,254 + MPMX20_02757 0.62 -2.3 2,913,262 - MPMX20_02757 0.63 -0.5 2,913,296 + MPMX20_02757 0.65 +1.8 2,913,355 - MPMX20_02757 0.69 -1.0 2,913,424 - MPMX20_02757 0.74 -1.9 2,913,535 + MPMX20_02757 0.81 +0.3 2,913,623 + MPMX20_02757 0.87 -1.3 2,913,672 - -1.5 2,913,785 + +0.8 2,913,793 - +1.1 2,913,793 - -1.3 2,913,834 + +0.5 2,913,834 + -1.1 2,913,878 - -1.9 2,913,883 - +0.3 2,913,888 - +1.3 2,913,888 - +0.1 2,913,893 - +0.8 2,913,912 + +0.0 2,913,920 - -1.0 2,914,019 + -0.3 2,914,020 - -0.2 2,914,062 + +0.7 2,914,063 + +0.0 2,914,068 + -0.1 2,914,076 - -1.3 2,914,076 - +0.2 2,914,102 - +0.4 2,914,153 - +0.8 2,914,159 + +0.4 2,914,199 + -0.6 2,914,268 + MPMX20_02758 0.13 +0.1 2,914,302 - MPMX20_02758 0.17 +0.9 2,914,447 - MPMX20_02758 0.33 -1.5 2,914,486 + MPMX20_02758 0.38 -1.6 2,914,491 + MPMX20_02758 0.38 -0.6 2,914,653 + MPMX20_02758 0.57 -0.1 2,914,675 - MPMX20_02758 0.59 +1.5 2,914,675 - MPMX20_02758 0.59 -0.2 2,914,711 - MPMX20_02758 0.63 +0.9 2,914,781 + MPMX20_02758 0.71 -0.3
Or see this region's nucleotide sequence