Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02513 and MPMX20_02514 overlap by 1 nucleotides MPMX20_02514 and MPMX20_02515 are separated by 43 nucleotides
MPMX20_02513: MPMX20_02513 - Tryptophan synthase beta chain, at 2,655,843 to 2,657,036
_02513
MPMX20_02514: MPMX20_02514 - Tryptophan synthase alpha chain, at 2,657,036 to 2,657,845
_02514
MPMX20_02515: MPMX20_02515 - Alcohol dehydrogenase, at 2,657,889 to 2,658,896
_02515
Position (kb)
2657
2658 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2656.113 kb on + strand, within MPMX20_02513 at 2656.126 kb on - strand, within MPMX20_02513 at 2656.177 kb on - strand, within MPMX20_02513 at 2656.179 kb on + strand, within MPMX20_02513 at 2656.179 kb on + strand, within MPMX20_02513 at 2656.187 kb on - strand, within MPMX20_02513 at 2656.187 kb on - strand, within MPMX20_02513 at 2656.187 kb on - strand, within MPMX20_02513 at 2656.187 kb on - strand, within MPMX20_02513 at 2656.187 kb on - strand, within MPMX20_02513 at 2656.187 kb on - strand, within MPMX20_02513 at 2656.200 kb on + strand, within MPMX20_02513 at 2656.200 kb on + strand, within MPMX20_02513 at 2656.208 kb on - strand, within MPMX20_02513 at 2656.208 kb on - strand, within MPMX20_02513 at 2656.298 kb on - strand, within MPMX20_02513 at 2656.298 kb on - strand, within MPMX20_02513 at 2656.308 kb on - strand, within MPMX20_02513 at 2656.337 kb on + strand, within MPMX20_02513 at 2656.397 kb on + strand, within MPMX20_02513 at 2656.403 kb on + strand, within MPMX20_02513 at 2656.543 kb on + strand, within MPMX20_02513 at 2656.552 kb on - strand, within MPMX20_02513 at 2656.617 kb on + strand, within MPMX20_02513 at 2656.619 kb on - strand, within MPMX20_02513 at 2656.619 kb on - strand, within MPMX20_02513 at 2656.660 kb on - strand, within MPMX20_02513 at 2656.730 kb on + strand, within MPMX20_02513 at 2656.730 kb on + strand, within MPMX20_02513 at 2656.738 kb on - strand, within MPMX20_02513 at 2656.738 kb on - strand, within MPMX20_02513 at 2656.738 kb on - strand, within MPMX20_02513 at 2656.845 kb on - strand, within MPMX20_02513 at 2656.874 kb on + strand, within MPMX20_02513 at 2656.884 kb on + strand, within MPMX20_02513 at 2656.884 kb on + strand, within MPMX20_02513 at 2656.892 kb on - strand, within MPMX20_02513 at 2656.892 kb on - strand, within MPMX20_02513 at 2656.960 kb on + strand at 2657.063 kb on - strand at 2657.090 kb on + strand at 2657.163 kb on - strand, within MPMX20_02514 at 2657.163 kb on - strand, within MPMX20_02514 at 2657.183 kb on - strand, within MPMX20_02514 at 2657.233 kb on - strand, within MPMX20_02514 at 2657.233 kb on - strand, within MPMX20_02514 at 2657.233 kb on - strand, within MPMX20_02514 at 2657.259 kb on + strand, within MPMX20_02514 at 2657.340 kb on + strand, within MPMX20_02514 at 2657.344 kb on - strand, within MPMX20_02514 at 2657.576 kb on + strand, within MPMX20_02514 at 2657.724 kb on + strand, within MPMX20_02514 at 2657.775 kb on + strand at 2657.780 kb on + strand at 2657.783 kb on - strand at 2657.840 kb on + strand at 2657.861 kb on + strand at 2657.925 kb on - strand at 2657.939 kb on + strand at 2657.947 kb on - strand at 2657.969 kb on + strand at 2658.156 kb on + strand, within MPMX20_02515 at 2658.221 kb on - strand, within MPMX20_02515 at 2658.338 kb on + strand, within MPMX20_02515 at 2658.346 kb on - strand, within MPMX20_02515 at 2658.346 kb on - strand, within MPMX20_02515 at 2658.443 kb on + strand, within MPMX20_02515 at 2658.443 kb on + strand, within MPMX20_02515 at 2658.451 kb on - strand, within MPMX20_02515 at 2658.577 kb on - strand, within MPMX20_02515 at 2658.577 kb on - strand, within MPMX20_02515 at 2658.750 kb on - strand, within MPMX20_02515
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 2,656,113 + MPMX20_02513 0.23 -1.0 2,656,126 - MPMX20_02513 0.24 -0.9 2,656,177 - MPMX20_02513 0.28 -0.6 2,656,179 + MPMX20_02513 0.28 +0.3 2,656,179 + MPMX20_02513 0.28 -1.6 2,656,187 - MPMX20_02513 0.29 -1.5 2,656,187 - MPMX20_02513 0.29 -0.1 2,656,187 - MPMX20_02513 0.29 -0.6 2,656,187 - MPMX20_02513 0.29 -1.8 2,656,187 - MPMX20_02513 0.29 -3.4 2,656,187 - MPMX20_02513 0.29 -0.0 2,656,200 + MPMX20_02513 0.30 -1.8 2,656,200 + MPMX20_02513 0.30 +0.2 2,656,208 - MPMX20_02513 0.31 -1.0 2,656,208 - MPMX20_02513 0.31 +0.6 2,656,298 - MPMX20_02513 0.38 -1.0 2,656,298 - MPMX20_02513 0.38 -2.4 2,656,308 - MPMX20_02513 0.39 -3.6 2,656,337 + MPMX20_02513 0.41 -3.6 2,656,397 + MPMX20_02513 0.46 +0.0 2,656,403 + MPMX20_02513 0.47 +0.3 2,656,543 + MPMX20_02513 0.59 +0.4 2,656,552 - MPMX20_02513 0.59 -1.8 2,656,617 + MPMX20_02513 0.65 -1.5 2,656,619 - MPMX20_02513 0.65 -1.8 2,656,619 - MPMX20_02513 0.65 -1.7 2,656,660 - MPMX20_02513 0.68 -1.0 2,656,730 + MPMX20_02513 0.74 -1.5 2,656,730 + MPMX20_02513 0.74 -1.7 2,656,738 - MPMX20_02513 0.75 -1.7 2,656,738 - MPMX20_02513 0.75 -0.9 2,656,738 - MPMX20_02513 0.75 -0.8 2,656,845 - MPMX20_02513 0.84 -0.4 2,656,874 + MPMX20_02513 0.86 -0.5 2,656,884 + MPMX20_02513 0.87 -1.3 2,656,884 + MPMX20_02513 0.87 -0.4 2,656,892 - MPMX20_02513 0.88 -0.0 2,656,892 - MPMX20_02513 0.88 -1.7 2,656,960 + -1.2 2,657,063 - +0.0 2,657,090 + -1.0 2,657,163 - MPMX20_02514 0.16 -1.3 2,657,163 - MPMX20_02514 0.16 -1.6 2,657,183 - MPMX20_02514 0.18 -1.8 2,657,233 - MPMX20_02514 0.24 -0.7 2,657,233 - MPMX20_02514 0.24 -1.0 2,657,233 - MPMX20_02514 0.24 -0.7 2,657,259 + MPMX20_02514 0.28 -0.4 2,657,340 + MPMX20_02514 0.38 -1.1 2,657,344 - MPMX20_02514 0.38 -1.3 2,657,576 + MPMX20_02514 0.67 -0.3 2,657,724 + MPMX20_02514 0.85 -1.1 2,657,775 + -1.0 2,657,780 + -1.0 2,657,783 - -2.4 2,657,840 + -0.4 2,657,861 + +2.9 2,657,925 - -0.4 2,657,939 + -1.7 2,657,947 - +0.0 2,657,969 + -0.5 2,658,156 + MPMX20_02515 0.26 +0.6 2,658,221 - MPMX20_02515 0.33 -0.3 2,658,338 + MPMX20_02515 0.45 +0.6 2,658,346 - MPMX20_02515 0.45 -0.4 2,658,346 - MPMX20_02515 0.45 +0.0 2,658,443 + MPMX20_02515 0.55 -0.4 2,658,443 + MPMX20_02515 0.55 +2.9 2,658,451 - MPMX20_02515 0.56 +0.2 2,658,577 - MPMX20_02515 0.68 -0.3 2,658,577 - MPMX20_02515 0.68 -0.0 2,658,750 - MPMX20_02515 0.85 +0.1
Or see this region's nucleotide sequence