Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02514

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02513 and MPMX20_02514 overlap by 1 nucleotidesMPMX20_02514 and MPMX20_02515 are separated by 43 nucleotides MPMX20_02513: MPMX20_02513 - Tryptophan synthase beta chain, at 2,655,843 to 2,657,036 _02513 MPMX20_02514: MPMX20_02514 - Tryptophan synthase alpha chain, at 2,657,036 to 2,657,845 _02514 MPMX20_02515: MPMX20_02515 - Alcohol dehydrogenase, at 2,657,889 to 2,658,896 _02515 Position (kb) 2657 2658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2656.113 kb on + strand, within MPMX20_02513at 2656.126 kb on - strand, within MPMX20_02513at 2656.177 kb on - strand, within MPMX20_02513at 2656.179 kb on + strand, within MPMX20_02513at 2656.179 kb on + strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.200 kb on + strand, within MPMX20_02513at 2656.200 kb on + strand, within MPMX20_02513at 2656.208 kb on - strand, within MPMX20_02513at 2656.208 kb on - strand, within MPMX20_02513at 2656.298 kb on - strand, within MPMX20_02513at 2656.298 kb on - strand, within MPMX20_02513at 2656.308 kb on - strand, within MPMX20_02513at 2656.337 kb on + strand, within MPMX20_02513at 2656.397 kb on + strand, within MPMX20_02513at 2656.403 kb on + strand, within MPMX20_02513at 2656.543 kb on + strand, within MPMX20_02513at 2656.552 kb on - strand, within MPMX20_02513at 2656.617 kb on + strand, within MPMX20_02513at 2656.619 kb on - strand, within MPMX20_02513at 2656.619 kb on - strand, within MPMX20_02513at 2656.660 kb on - strand, within MPMX20_02513at 2656.730 kb on + strand, within MPMX20_02513at 2656.730 kb on + strand, within MPMX20_02513at 2656.738 kb on - strand, within MPMX20_02513at 2656.738 kb on - strand, within MPMX20_02513at 2656.738 kb on - strand, within MPMX20_02513at 2656.845 kb on - strand, within MPMX20_02513at 2656.874 kb on + strand, within MPMX20_02513at 2656.884 kb on + strand, within MPMX20_02513at 2656.884 kb on + strand, within MPMX20_02513at 2656.892 kb on - strand, within MPMX20_02513at 2656.892 kb on - strand, within MPMX20_02513at 2656.960 kb on + strandat 2657.063 kb on - strandat 2657.090 kb on + strandat 2657.163 kb on - strand, within MPMX20_02514at 2657.163 kb on - strand, within MPMX20_02514at 2657.183 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.259 kb on + strand, within MPMX20_02514at 2657.340 kb on + strand, within MPMX20_02514at 2657.344 kb on - strand, within MPMX20_02514at 2657.576 kb on + strand, within MPMX20_02514at 2657.724 kb on + strand, within MPMX20_02514at 2657.775 kb on + strandat 2657.780 kb on + strandat 2657.783 kb on - strandat 2657.840 kb on + strandat 2657.861 kb on + strandat 2657.925 kb on - strandat 2657.939 kb on + strandat 2657.947 kb on - strandat 2657.969 kb on + strandat 2658.156 kb on + strand, within MPMX20_02515at 2658.221 kb on - strand, within MPMX20_02515at 2658.338 kb on + strand, within MPMX20_02515at 2658.346 kb on - strand, within MPMX20_02515at 2658.346 kb on - strand, within MPMX20_02515at 2658.443 kb on + strand, within MPMX20_02515at 2658.443 kb on + strand, within MPMX20_02515at 2658.451 kb on - strand, within MPMX20_02515at 2658.577 kb on - strand, within MPMX20_02515at 2658.577 kb on - strand, within MPMX20_02515at 2658.750 kb on - strand, within MPMX20_02515

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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2,656,113 + MPMX20_02513 0.23 -1.0
2,656,126 - MPMX20_02513 0.24 -0.9
2,656,177 - MPMX20_02513 0.28 -0.6
2,656,179 + MPMX20_02513 0.28 +0.3
2,656,179 + MPMX20_02513 0.28 -1.6
2,656,187 - MPMX20_02513 0.29 -1.5
2,656,187 - MPMX20_02513 0.29 -0.1
2,656,187 - MPMX20_02513 0.29 -0.6
2,656,187 - MPMX20_02513 0.29 -1.8
2,656,187 - MPMX20_02513 0.29 -3.4
2,656,187 - MPMX20_02513 0.29 -0.0
2,656,200 + MPMX20_02513 0.30 -1.8
2,656,200 + MPMX20_02513 0.30 +0.2
2,656,208 - MPMX20_02513 0.31 -1.0
2,656,208 - MPMX20_02513 0.31 +0.6
2,656,298 - MPMX20_02513 0.38 -1.0
2,656,298 - MPMX20_02513 0.38 -2.4
2,656,308 - MPMX20_02513 0.39 -3.6
2,656,337 + MPMX20_02513 0.41 -3.6
2,656,397 + MPMX20_02513 0.46 +0.0
2,656,403 + MPMX20_02513 0.47 +0.3
2,656,543 + MPMX20_02513 0.59 +0.4
2,656,552 - MPMX20_02513 0.59 -1.8
2,656,617 + MPMX20_02513 0.65 -1.5
2,656,619 - MPMX20_02513 0.65 -1.8
2,656,619 - MPMX20_02513 0.65 -1.7
2,656,660 - MPMX20_02513 0.68 -1.0
2,656,730 + MPMX20_02513 0.74 -1.5
2,656,730 + MPMX20_02513 0.74 -1.7
2,656,738 - MPMX20_02513 0.75 -1.7
2,656,738 - MPMX20_02513 0.75 -0.9
2,656,738 - MPMX20_02513 0.75 -0.8
2,656,845 - MPMX20_02513 0.84 -0.4
2,656,874 + MPMX20_02513 0.86 -0.5
2,656,884 + MPMX20_02513 0.87 -1.3
2,656,884 + MPMX20_02513 0.87 -0.4
2,656,892 - MPMX20_02513 0.88 -0.0
2,656,892 - MPMX20_02513 0.88 -1.7
2,656,960 + -1.2
2,657,063 - +0.0
2,657,090 + -1.0
2,657,163 - MPMX20_02514 0.16 -1.3
2,657,163 - MPMX20_02514 0.16 -1.6
2,657,183 - MPMX20_02514 0.18 -1.8
2,657,233 - MPMX20_02514 0.24 -0.7
2,657,233 - MPMX20_02514 0.24 -1.0
2,657,233 - MPMX20_02514 0.24 -0.7
2,657,259 + MPMX20_02514 0.28 -0.4
2,657,340 + MPMX20_02514 0.38 -1.1
2,657,344 - MPMX20_02514 0.38 -1.3
2,657,576 + MPMX20_02514 0.67 -0.3
2,657,724 + MPMX20_02514 0.85 -1.1
2,657,775 + -1.0
2,657,780 + -1.0
2,657,783 - -2.4
2,657,840 + -0.4
2,657,861 + +2.9
2,657,925 - -0.4
2,657,939 + -1.7
2,657,947 - +0.0
2,657,969 + -0.5
2,658,156 + MPMX20_02515 0.26 +0.6
2,658,221 - MPMX20_02515 0.33 -0.3
2,658,338 + MPMX20_02515 0.45 +0.6
2,658,346 - MPMX20_02515 0.45 -0.4
2,658,346 - MPMX20_02515 0.45 +0.0
2,658,443 + MPMX20_02515 0.55 -0.4
2,658,443 + MPMX20_02515 0.55 +2.9
2,658,451 - MPMX20_02515 0.56 +0.2
2,658,577 - MPMX20_02515 0.68 -0.3
2,658,577 - MPMX20_02515 0.68 -0.0
2,658,750 - MPMX20_02515 0.85 +0.1

Or see this region's nucleotide sequence