Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02510 and MPMX20_02511 overlap by 1 nucleotides MPMX20_02511 and MPMX20_02512 are separated by 3 nucleotides
MPMX20_02510: MPMX20_02510 - Anthranilate synthase component 1, at 2,651,313 to 2,652,875
_02510
MPMX20_02511: MPMX20_02511 - Bifunctional protein TrpGD, at 2,652,875 to 2,654,470
_02511
MPMX20_02512: MPMX20_02512 - Tryptophan biosynthesis protein TrpCF, at 2,654,474 to 2,655,832
_02512
Position (kb)
2652
2653
2654
2655 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2651.887 kb on + strand, within MPMX20_02510 at 2651.906 kb on - strand, within MPMX20_02510 at 2651.908 kb on + strand, within MPMX20_02510 at 2651.916 kb on - strand, within MPMX20_02510 at 2651.944 kb on + strand, within MPMX20_02510 at 2651.986 kb on - strand, within MPMX20_02510 at 2651.988 kb on + strand, within MPMX20_02510 at 2651.988 kb on - strand, within MPMX20_02510 at 2652.011 kb on + strand, within MPMX20_02510 at 2652.044 kb on + strand, within MPMX20_02510 at 2652.051 kb on + strand, within MPMX20_02510 at 2652.052 kb on - strand, within MPMX20_02510 at 2652.059 kb on - strand, within MPMX20_02510 at 2652.128 kb on + strand, within MPMX20_02510 at 2652.136 kb on - strand, within MPMX20_02510 at 2652.136 kb on - strand, within MPMX20_02510 at 2652.150 kb on + strand, within MPMX20_02510 at 2652.159 kb on - strand, within MPMX20_02510 at 2652.170 kb on + strand, within MPMX20_02510 at 2652.175 kb on + strand, within MPMX20_02510 at 2652.175 kb on + strand, within MPMX20_02510 at 2652.183 kb on - strand, within MPMX20_02510 at 2652.183 kb on - strand, within MPMX20_02510 at 2652.211 kb on + strand, within MPMX20_02510 at 2652.221 kb on + strand, within MPMX20_02510 at 2652.221 kb on + strand, within MPMX20_02510 at 2652.229 kb on - strand, within MPMX20_02510 at 2652.273 kb on + strand, within MPMX20_02510 at 2652.295 kb on + strand, within MPMX20_02510 at 2652.419 kb on - strand, within MPMX20_02510 at 2652.426 kb on + strand, within MPMX20_02510 at 2652.561 kb on + strand, within MPMX20_02510 at 2652.569 kb on - strand, within MPMX20_02510 at 2652.570 kb on + strand, within MPMX20_02510 at 2652.584 kb on - strand, within MPMX20_02510 at 2652.586 kb on + strand, within MPMX20_02510 at 2652.620 kb on + strand, within MPMX20_02510 at 2652.718 kb on + strand, within MPMX20_02510 at 2652.791 kb on + strand at 2652.828 kb on + strand at 2652.866 kb on - strand at 2652.882 kb on + strand at 2652.909 kb on - strand at 2652.909 kb on - strand at 2652.909 kb on - strand at 2652.983 kb on + strand at 2653.026 kb on + strand at 2653.132 kb on - strand, within MPMX20_02511 at 2653.133 kb on - strand, within MPMX20_02511 at 2653.214 kb on - strand, within MPMX20_02511 at 2653.251 kb on - strand, within MPMX20_02511 at 2653.269 kb on + strand, within MPMX20_02511 at 2653.333 kb on + strand, within MPMX20_02511 at 2653.341 kb on - strand, within MPMX20_02511 at 2653.435 kb on + strand, within MPMX20_02511 at 2653.443 kb on - strand, within MPMX20_02511 at 2653.448 kb on - strand, within MPMX20_02511 at 2653.452 kb on + strand, within MPMX20_02511 at 2653.452 kb on + strand, within MPMX20_02511 at 2653.452 kb on + strand, within MPMX20_02511 at 2653.460 kb on - strand, within MPMX20_02511 at 2653.462 kb on + strand, within MPMX20_02511 at 2653.462 kb on + strand, within MPMX20_02511 at 2653.470 kb on + strand, within MPMX20_02511 at 2653.470 kb on + strand, within MPMX20_02511 at 2653.470 kb on - strand, within MPMX20_02511 at 2653.470 kb on - strand, within MPMX20_02511 at 2653.470 kb on - strand, within MPMX20_02511 at 2653.507 kb on + strand, within MPMX20_02511 at 2653.561 kb on + strand, within MPMX20_02511 at 2653.561 kb on + strand, within MPMX20_02511 at 2653.561 kb on + strand, within MPMX20_02511 at 2653.569 kb on - strand, within MPMX20_02511 at 2653.611 kb on + strand, within MPMX20_02511 at 2653.795 kb on + strand, within MPMX20_02511 at 2653.827 kb on + strand, within MPMX20_02511 at 2653.827 kb on + strand, within MPMX20_02511 at 2653.878 kb on - strand, within MPMX20_02511 at 2653.889 kb on + strand, within MPMX20_02511 at 2653.889 kb on + strand, within MPMX20_02511 at 2653.889 kb on + strand, within MPMX20_02511 at 2653.889 kb on + strand, within MPMX20_02511 at 2653.897 kb on - strand, within MPMX20_02511 at 2653.907 kb on - strand, within MPMX20_02511 at 2654.041 kb on + strand, within MPMX20_02511 at 2654.049 kb on - strand, within MPMX20_02511 at 2654.165 kb on - strand, within MPMX20_02511 at 2654.293 kb on - strand, within MPMX20_02511 at 2654.349 kb on + strand at 2654.371 kb on - strand at 2654.373 kb on + strand at 2654.391 kb on - strand at 2654.419 kb on + strand at 2654.427 kb on - strand at 2654.432 kb on + strand at 2654.432 kb on + strand at 2654.466 kb on + strand at 2654.570 kb on + strand at 2654.570 kb on + strand at 2654.578 kb on - strand at 2654.632 kb on + strand, within MPMX20_02512 at 2654.665 kb on - strand, within MPMX20_02512 at 2654.732 kb on - strand, within MPMX20_02512 at 2654.799 kb on + strand, within MPMX20_02512 at 2654.807 kb on - strand, within MPMX20_02512 at 2654.807 kb on - strand, within MPMX20_02512 at 2654.807 kb on - strand, within MPMX20_02512 at 2654.861 kb on - strand, within MPMX20_02512 at 2654.872 kb on - strand, within MPMX20_02512 at 2654.937 kb on + strand, within MPMX20_02512 at 2654.945 kb on - strand, within MPMX20_02512 at 2654.973 kb on - strand, within MPMX20_02512 at 2655.035 kb on - strand, within MPMX20_02512 at 2655.048 kb on + strand, within MPMX20_02512 at 2655.061 kb on - strand, within MPMX20_02512 at 2655.090 kb on + strand, within MPMX20_02512 at 2655.132 kb on + strand, within MPMX20_02512 at 2655.142 kb on - strand, within MPMX20_02512 at 2655.155 kb on - strand, within MPMX20_02512 at 2655.284 kb on - strand, within MPMX20_02512 at 2655.327 kb on + strand, within MPMX20_02512 at 2655.335 kb on - strand, within MPMX20_02512 at 2655.393 kb on + strand, within MPMX20_02512 at 2655.469 kb on + strand, within MPMX20_02512
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A remove 2,651,887 + MPMX20_02510 0.37 -0.7 2,651,906 - MPMX20_02510 0.38 -0.5 2,651,908 + MPMX20_02510 0.38 -0.6 2,651,916 - MPMX20_02510 0.39 -0.5 2,651,944 + MPMX20_02510 0.40 -0.9 2,651,986 - MPMX20_02510 0.43 -0.9 2,651,988 + MPMX20_02510 0.43 -2.7 2,651,988 - MPMX20_02510 0.43 -1.0 2,652,011 + MPMX20_02510 0.45 -1.0 2,652,044 + MPMX20_02510 0.47 -1.5 2,652,051 + MPMX20_02510 0.47 -2.2 2,652,052 - MPMX20_02510 0.47 -1.6 2,652,059 - MPMX20_02510 0.48 -1.5 2,652,128 + MPMX20_02510 0.52 -0.3 2,652,136 - MPMX20_02510 0.53 -0.9 2,652,136 - MPMX20_02510 0.53 -4.0 2,652,150 + MPMX20_02510 0.54 -2.0 2,652,159 - MPMX20_02510 0.54 -0.5 2,652,170 + MPMX20_02510 0.55 -1.3 2,652,175 + MPMX20_02510 0.55 -0.2 2,652,175 + MPMX20_02510 0.55 -0.7 2,652,183 - MPMX20_02510 0.56 -0.4 2,652,183 - MPMX20_02510 0.56 -0.7 2,652,211 + MPMX20_02510 0.57 -0.2 2,652,221 + MPMX20_02510 0.58 -1.0 2,652,221 + MPMX20_02510 0.58 -0.4 2,652,229 - MPMX20_02510 0.59 -0.9 2,652,273 + MPMX20_02510 0.61 -0.2 2,652,295 + MPMX20_02510 0.63 -2.0 2,652,419 - MPMX20_02510 0.71 -2.1 2,652,426 + MPMX20_02510 0.71 +0.1 2,652,561 + MPMX20_02510 0.80 -0.5 2,652,569 - MPMX20_02510 0.80 -2.5 2,652,570 + MPMX20_02510 0.80 -0.9 2,652,584 - MPMX20_02510 0.81 -0.8 2,652,586 + MPMX20_02510 0.81 -0.3 2,652,620 + MPMX20_02510 0.84 +1.9 2,652,718 + MPMX20_02510 0.90 -0.9 2,652,791 + -1.0 2,652,828 + -1.7 2,652,866 - -2.2 2,652,882 + -1.2 2,652,909 - -0.7 2,652,909 - -1.1 2,652,909 - -1.4 2,652,983 + -2.6 2,653,026 + -1.8 2,653,132 - MPMX20_02511 0.16 -0.4 2,653,133 - MPMX20_02511 0.16 -0.8 2,653,214 - MPMX20_02511 0.21 +0.3 2,653,251 - MPMX20_02511 0.24 +0.9 2,653,269 + MPMX20_02511 0.25 -1.6 2,653,333 + MPMX20_02511 0.29 -2.5 2,653,341 - MPMX20_02511 0.29 -0.7 2,653,435 + MPMX20_02511 0.35 -0.8 2,653,443 - MPMX20_02511 0.36 -0.6 2,653,448 - MPMX20_02511 0.36 -1.7 2,653,452 + MPMX20_02511 0.36 -1.2 2,653,452 + MPMX20_02511 0.36 -1.6 2,653,452 + MPMX20_02511 0.36 -1.7 2,653,460 - MPMX20_02511 0.37 -2.8 2,653,462 + MPMX20_02511 0.37 -0.2 2,653,462 + MPMX20_02511 0.37 -0.6 2,653,470 + MPMX20_02511 0.37 -0.7 2,653,470 + MPMX20_02511 0.37 -2.6 2,653,470 - MPMX20_02511 0.37 -0.4 2,653,470 - MPMX20_02511 0.37 -0.5 2,653,470 - MPMX20_02511 0.37 -2.0 2,653,507 + MPMX20_02511 0.40 -1.4 2,653,561 + MPMX20_02511 0.43 -4.1 2,653,561 + MPMX20_02511 0.43 -1.7 2,653,561 + MPMX20_02511 0.43 -0.5 2,653,569 - MPMX20_02511 0.43 -1.8 2,653,611 + MPMX20_02511 0.46 -0.3 2,653,795 + MPMX20_02511 0.58 +3.9 2,653,827 + MPMX20_02511 0.60 -0.9 2,653,827 + MPMX20_02511 0.60 -0.6 2,653,878 - MPMX20_02511 0.63 -1.0 2,653,889 + MPMX20_02511 0.64 +0.8 2,653,889 + MPMX20_02511 0.64 -0.8 2,653,889 + MPMX20_02511 0.64 -2.3 2,653,889 + MPMX20_02511 0.64 +0.3 2,653,897 - MPMX20_02511 0.64 -1.1 2,653,907 - MPMX20_02511 0.65 -0.7 2,654,041 + MPMX20_02511 0.73 -1.0 2,654,049 - MPMX20_02511 0.74 -0.1 2,654,165 - MPMX20_02511 0.81 -0.3 2,654,293 - MPMX20_02511 0.89 -0.9 2,654,349 + -1.2 2,654,371 - +0.3 2,654,373 + -0.9 2,654,391 - +0.1 2,654,419 + +0.3 2,654,427 - -1.4 2,654,432 + -1.9 2,654,432 + -1.9 2,654,466 + -0.9 2,654,570 + -1.4 2,654,570 + -1.3 2,654,578 - -2.2 2,654,632 + MPMX20_02512 0.12 -0.9 2,654,665 - MPMX20_02512 0.14 +0.0 2,654,732 - MPMX20_02512 0.19 -1.0 2,654,799 + MPMX20_02512 0.24 -0.8 2,654,807 - MPMX20_02512 0.25 -1.5 2,654,807 - MPMX20_02512 0.25 -1.2 2,654,807 - MPMX20_02512 0.25 -1.3 2,654,861 - MPMX20_02512 0.28 -0.5 2,654,872 - MPMX20_02512 0.29 -1.1 2,654,937 + MPMX20_02512 0.34 +1.0 2,654,945 - MPMX20_02512 0.35 -0.9 2,654,973 - MPMX20_02512 0.37 -1.1 2,655,035 - MPMX20_02512 0.41 -0.6 2,655,048 + MPMX20_02512 0.42 -0.7 2,655,061 - MPMX20_02512 0.43 -3.0 2,655,090 + MPMX20_02512 0.45 -1.5 2,655,132 + MPMX20_02512 0.48 -1.2 2,655,142 - MPMX20_02512 0.49 -1.5 2,655,155 - MPMX20_02512 0.50 -0.5 2,655,284 - MPMX20_02512 0.60 -2.3 2,655,327 + MPMX20_02512 0.63 -1.9 2,655,335 - MPMX20_02512 0.63 +0.2 2,655,393 + MPMX20_02512 0.68 -0.7 2,655,469 + MPMX20_02512 0.73 -0.8
Or see this region's nucleotide sequence