Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00611

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00609 and MPMX20_00610 are separated by 176 nucleotidesMPMX20_00610 and MPMX20_00611 are separated by 59 nucleotidesMPMX20_00611 and MPMX20_00612 are separated by 81 nucleotides MPMX20_00609: MPMX20_00609 - HTH-type transcriptional regulator NorG, at 636,027 to 637,442 _00609 MPMX20_00610: MPMX20_00610 - hypothetical protein, at 637,619 to 637,780 _00610 MPMX20_00611: MPMX20_00611 - hypothetical protein, at 637,840 to 638,094 _00611 MPMX20_00612: MPMX20_00612 - HTH-type transcriptional regulatory protein GabR, at 638,176 to 639,564 _00612 Position (kb) 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 636.888 kb on - strand, within MPMX20_00609at 636.888 kb on - strand, within MPMX20_00609at 636.900 kb on - strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.021 kb on - strand, within MPMX20_00609at 637.021 kb on - strand, within MPMX20_00609at 637.021 kb on - strand, within MPMX20_00609at 637.044 kb on - strand, within MPMX20_00609at 637.049 kb on - strand, within MPMX20_00609at 637.231 kb on + strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.265 kb on + strand, within MPMX20_00609at 637.270 kb on + strand, within MPMX20_00609at 637.273 kb on - strand, within MPMX20_00609at 637.310 kb on + strandat 637.310 kb on + strandat 637.318 kb on - strandat 637.318 kb on - strandat 637.337 kb on + strandat 637.345 kb on - strandat 637.383 kb on + strandat 637.383 kb on + strandat 637.390 kb on - strandat 637.391 kb on - strandat 637.402 kb on + strandat 637.402 kb on - strandat 637.482 kb on + strandat 637.682 kb on - strand, within MPMX20_00610at 637.690 kb on - strand, within MPMX20_00610at 637.720 kb on - strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.789 kb on + strandat 637.802 kb on - strandat 637.816 kb on + strandat 637.816 kb on + strandat 637.824 kb on - strandat 637.907 kb on + strand, within MPMX20_00611at 637.915 kb on - strand, within MPMX20_00611at 637.917 kb on + strand, within MPMX20_00611at 637.917 kb on + strand, within MPMX20_00611at 637.925 kb on - strand, within MPMX20_00611at 637.926 kb on + strand, within MPMX20_00611at 637.977 kb on + strand, within MPMX20_00611at 638.025 kb on + strand, within MPMX20_00611at 638.039 kb on + strand, within MPMX20_00611at 638.047 kb on - strand, within MPMX20_00611at 638.156 kb on - strandat 638.163 kb on - strandat 638.173 kb on + strandat 638.202 kb on + strandat 638.202 kb on + strandat 638.240 kb on - strandat 638.245 kb on - strandat 638.247 kb on + strandat 638.251 kb on + strandat 638.255 kb on - strandat 638.259 kb on - strandat 638.270 kb on - strandat 638.275 kb on + strandat 638.323 kb on - strand, within MPMX20_00612at 638.333 kb on + strand, within MPMX20_00612at 638.339 kb on - strand, within MPMX20_00612at 638.384 kb on - strand, within MPMX20_00612at 638.389 kb on - strand, within MPMX20_00612at 638.407 kb on - strand, within MPMX20_00612at 638.429 kb on + strand, within MPMX20_00612at 638.436 kb on - strand, within MPMX20_00612at 638.437 kb on - strand, within MPMX20_00612at 638.447 kb on + strand, within MPMX20_00612at 638.448 kb on - strand, within MPMX20_00612at 638.448 kb on - strand, within MPMX20_00612at 638.471 kb on + strand, within MPMX20_00612at 638.478 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.578 kb on - strand, within MPMX20_00612at 638.604 kb on - strand, within MPMX20_00612at 638.637 kb on - strand, within MPMX20_00612at 638.721 kb on - strand, within MPMX20_00612at 638.773 kb on - strand, within MPMX20_00612at 638.775 kb on + strand, within MPMX20_00612at 638.789 kb on - strand, within MPMX20_00612at 638.791 kb on + strand, within MPMX20_00612at 638.791 kb on + strand, within MPMX20_00612at 638.802 kb on + strand, within MPMX20_00612at 638.822 kb on - strand, within MPMX20_00612at 638.941 kb on - strand, within MPMX20_00612at 638.943 kb on - strand, within MPMX20_00612at 638.960 kb on + strand, within MPMX20_00612at 639.053 kb on - strand, within MPMX20_00612at 639.078 kb on + strand, within MPMX20_00612at 639.084 kb on - strand, within MPMX20_00612at 639.094 kb on - strand, within MPMX20_00612

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
remove
636,888 - MPMX20_00609 0.61 -2.3
636,888 - MPMX20_00609 0.61 -1.9
636,900 - MPMX20_00609 0.62 -0.4
637,013 + MPMX20_00609 0.70 +0.0
637,013 + MPMX20_00609 0.70 -1.3
637,013 + MPMX20_00609 0.70 -0.2
637,013 + MPMX20_00609 0.70 +0.1
637,021 - MPMX20_00609 0.70 -0.3
637,021 - MPMX20_00609 0.70 +2.3
637,021 - MPMX20_00609 0.70 -0.3
637,044 - MPMX20_00609 0.72 -0.1
637,049 - MPMX20_00609 0.72 +0.1
637,231 + MPMX20_00609 0.85 +0.6
637,239 - MPMX20_00609 0.86 +0.1
637,239 - MPMX20_00609 0.86 +0.1
637,239 - MPMX20_00609 0.86 +0.4
637,265 + MPMX20_00609 0.87 +0.9
637,270 + MPMX20_00609 0.88 -2.0
637,273 - MPMX20_00609 0.88 +1.9
637,310 + +0.4
637,310 + -0.2
637,318 - -0.3
637,318 - -0.1
637,337 + -0.0
637,345 - +0.2
637,383 + -0.1
637,383 + -1.1
637,390 - -1.5
637,391 - -0.2
637,402 + -2.3
637,402 - -0.2
637,482 + +0.6
637,682 - MPMX20_00610 0.39 -0.7
637,690 - MPMX20_00610 0.44 +0.3
637,720 - MPMX20_00610 0.62 -2.6
637,744 + MPMX20_00610 0.77 -0.5
637,744 + MPMX20_00610 0.77 +0.6
637,744 + MPMX20_00610 0.77 +1.6
637,744 + MPMX20_00610 0.77 -0.5
637,744 + MPMX20_00610 0.77 -0.3
637,744 + MPMX20_00610 0.77 +0.2
637,744 + MPMX20_00610 0.77 -0.7
637,744 + MPMX20_00610 0.77 +1.7
637,752 - MPMX20_00610 0.82 +0.4
637,752 - MPMX20_00610 0.82 +1.1
637,752 - MPMX20_00610 0.82 -0.7
637,752 - MPMX20_00610 0.82 -1.3
637,752 - MPMX20_00610 0.82 +0.5
637,752 - MPMX20_00610 0.82 -0.7
637,752 - MPMX20_00610 0.82 +0.7
637,752 - MPMX20_00610 0.82 +1.1
637,752 - MPMX20_00610 0.82 -0.2
637,752 - MPMX20_00610 0.82 -1.0
637,752 - MPMX20_00610 0.82 +1.0
637,789 + +0.1
637,802 - -0.1
637,816 + -0.2
637,816 + -0.1
637,824 - +0.3
637,907 + MPMX20_00611 0.26 +1.4
637,915 - MPMX20_00611 0.29 +1.2
637,917 + MPMX20_00611 0.30 +0.5
637,917 + MPMX20_00611 0.30 -0.5
637,925 - MPMX20_00611 0.33 +2.4
637,926 + MPMX20_00611 0.34 +2.2
637,977 + MPMX20_00611 0.54 +0.4
638,025 + MPMX20_00611 0.73 -0.5
638,039 + MPMX20_00611 0.78 +0.9
638,047 - MPMX20_00611 0.81 +1.6
638,156 - -1.4
638,163 - +0.1
638,173 + +0.1
638,202 + +0.2
638,202 + +0.3
638,240 - -0.9
638,245 - -1.3
638,247 + +0.4
638,251 + -0.0
638,255 - -0.3
638,259 - -1.2
638,270 - -2.0
638,275 + +0.2
638,323 - MPMX20_00612 0.11 -0.4
638,333 + MPMX20_00612 0.11 -0.4
638,339 - MPMX20_00612 0.12 +0.2
638,384 - MPMX20_00612 0.15 +0.4
638,389 - MPMX20_00612 0.15 +0.8
638,407 - MPMX20_00612 0.17 -0.9
638,429 + MPMX20_00612 0.18 -0.1
638,436 - MPMX20_00612 0.19 -0.4
638,437 - MPMX20_00612 0.19 +0.8
638,447 + MPMX20_00612 0.20 -0.5
638,448 - MPMX20_00612 0.20 +0.7
638,448 - MPMX20_00612 0.20 -0.0
638,471 + MPMX20_00612 0.21 +0.1
638,478 - MPMX20_00612 0.22 +0.4
638,479 - MPMX20_00612 0.22 -1.3
638,479 - MPMX20_00612 0.22 -0.1
638,479 - MPMX20_00612 0.22 -0.6
638,479 - MPMX20_00612 0.22 -0.8
638,578 - MPMX20_00612 0.29 +0.3
638,604 - MPMX20_00612 0.31 +1.0
638,637 - MPMX20_00612 0.33 +1.0
638,721 - MPMX20_00612 0.39 +0.8
638,773 - MPMX20_00612 0.43 -0.3
638,775 + MPMX20_00612 0.43 -0.3
638,789 - MPMX20_00612 0.44 -1.3
638,791 + MPMX20_00612 0.44 +0.5
638,791 + MPMX20_00612 0.44 -1.2
638,802 + MPMX20_00612 0.45 +0.2
638,822 - MPMX20_00612 0.47 -0.9
638,941 - MPMX20_00612 0.55 +0.0
638,943 - MPMX20_00612 0.55 +0.1
638,960 + MPMX20_00612 0.56 -0.7
639,053 - MPMX20_00612 0.63 +0.3
639,078 + MPMX20_00612 0.65 -0.1
639,084 - MPMX20_00612 0.65 -0.0
639,094 - MPMX20_00612 0.66 +0.2

Or see this region's nucleotide sequence