Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09550

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
2,040,147	+		ABCV34_RS09545	0.35	-2.9
2,040,147	+		ABCV34_RS09545	0.35	-2.3
2,040,147	+		ABCV34_RS09545	0.35	-3.7
2,040,147	+		ABCV34_RS09545	0.35	-3.3
2,040,148	-		ABCV34_RS09545	0.36	-2.8
2,040,148	-		ABCV34_RS09545	0.36	-2.9
2,040,148	-		ABCV34_RS09545	0.36	-2.2
2,040,392	+		ABCV34_RS09545	0.60	-3.1
2,040,392	+		ABCV34_RS09545	0.60	-2.1
2,040,392	+		ABCV34_RS09545	0.60	-3.9
2,040,393	-		ABCV34_RS09545	0.60	-3.5
2,040,393	-		ABCV34_RS09545	0.60	-2.7
2,040,771	-				-2.9
2,040,771	-				-3.2
2,040,771	-				-2.8
2,040,771	-				-3.9
2,040,771	-				-3.3
2,040,804	+				-2.6
2,040,804	+				-1.8
2,040,804	+				-2.3
2,040,804	+				-3.7
2,040,804	+				-3.5
2,040,804	+				-1.8
2,040,805	-				-2.7
2,040,805	-				-3.3
2,040,805	-				-2.6
2,040,805	-				-3.2
2,040,805	-				-3.2
2,040,805	-				-3.3
2,040,859	+				-1.1
2,040,860	-				-2.9
2,040,860	-				-2.1
2,040,860	-				-1.9
2,040,860	-				-2.1
2,040,860	-				-1.5
2,040,860	-				-2.6
2,040,894	-				-2.7
2,040,894	-				-2.7
2,040,900	+				-2.3
2,040,908	+				-1.9
2,040,913	+				-2.3
2,040,914	-				-3.1
2,040,936	-				-2.1
2,040,936	-				-2.4
2,041,083	-				-2.0
2,041,083	-				-3.6
2,041,152	+		ABCV34_RS09550	0.14	-3.4
2,041,352	+		ABCV34_RS09550	0.32	-4.5
2,041,382	+		ABCV34_RS09550	0.34	-2.5
2,041,382	+		ABCV34_RS09550	0.34	-1.1
2,041,382	+		ABCV34_RS09550	0.34	-4.2
2,041,382	+		ABCV34_RS09550	0.34	-3.2
2,041,382	+		ABCV34_RS09550	0.34	-4.4
2,041,382	+		ABCV34_RS09550	0.34	-2.2
2,041,382	+		ABCV34_RS09550	0.34	-2.0
2,041,382	+		ABCV34_RS09550	0.34	-3.1
2,041,382	+		ABCV34_RS09550	0.34	-2.3
2,041,382	+		ABCV34_RS09550	0.34	-2.4
2,041,382	+		ABCV34_RS09550	0.34	-3.3
2,041,382	+		ABCV34_RS09550	0.34	-4.7
2,041,382	+		ABCV34_RS09550	0.34	-3.7
2,041,383	-		ABCV34_RS09550	0.34	-1.6
2,041,383	-		ABCV34_RS09550	0.34	-3.7
2,041,383	-		ABCV34_RS09550	0.34	-2.3
2,041,383	-		ABCV34_RS09550	0.34	-3.1
2,041,383	-		ABCV34_RS09550	0.34	-2.4
2,041,383	-		ABCV34_RS09550	0.34	-2.7
2,041,383	-		ABCV34_RS09550	0.34	-2.0
2,041,383	-		ABCV34_RS09550	0.34	-3.0
2,041,383	-		ABCV34_RS09550	0.34	-2.6
2,041,383	-		ABCV34_RS09550	0.34	-3.8
2,041,383	-		ABCV34_RS09550	0.34	-2.1
2,041,383	-		ABCV34_RS09550	0.34	-2.9
2,041,383	-		ABCV34_RS09550	0.34	-2.8
2,041,514	+		ABCV34_RS09550	0.45	-3.8
2,041,514	+		ABCV34_RS09550	0.45	-2.4
2,041,514	+		ABCV34_RS09550	0.45	-3.4
2,041,515	-		ABCV34_RS09550	0.46	-2.5
2,041,640	+		ABCV34_RS09550	0.56	-2.4
2,041,640	+		ABCV34_RS09550	0.56	-2.5
2,041,640	+		ABCV34_RS09550	0.56	-3.3
2,041,640	+		ABCV34_RS09550	0.56	-1.9
2,041,641	-		ABCV34_RS09550	0.56	-3.5
2,041,641	-		ABCV34_RS09550	0.56	-2.5
2,041,641	-		ABCV34_RS09550	0.56	-2.3
2,041,641	-		ABCV34_RS09550	0.56	-1.7
2,041,641	-		ABCV34_RS09550	0.56	-2.5
2,041,641	-		ABCV34_RS09550	0.56	-1.8
2,041,677	+		ABCV34_RS09550	0.59	-3.6
2,041,677	+		ABCV34_RS09550	0.59	-1.9
2,041,677	+		ABCV34_RS09550	0.59	-2.8
2,041,677	+		ABCV34_RS09550	0.59	-3.2
2,041,678	-		ABCV34_RS09550	0.60	-2.7
2,041,678	-		ABCV34_RS09550	0.60	-3.4
2,041,678	-		ABCV34_RS09550	0.60	-2.3
2,041,694	+		ABCV34_RS09550	0.61	-3.0
2,041,695	-		ABCV34_RS09550	0.61	-2.8
2,041,764	+		ABCV34_RS09550	0.67	-1.9
2,041,764	+		ABCV34_RS09550	0.67	-2.4
2,041,764	+		ABCV34_RS09550	0.67	-3.2
2,041,764	+		ABCV34_RS09550	0.67	-4.0
2,041,764	+		ABCV34_RS09550	0.67	-3.2
2,041,764	+		ABCV34_RS09550	0.67	-2.1
2,041,764	+		ABCV34_RS09550	0.67	-2.0
2,041,765	-		ABCV34_RS09550	0.67	-3.3
2,041,765	-		ABCV34_RS09550	0.67	-3.0
2,041,765	-		ABCV34_RS09550	0.67	-3.1
2,041,814	+		ABCV34_RS09550	0.71	-3.1
2,041,814	+		ABCV34_RS09550	0.71	-3.1
2,041,814	+		ABCV34_RS09550	0.71	-2.3
2,041,814	+		ABCV34_RS09550	0.71	-2.4
2,041,815	-		ABCV34_RS09550	0.71	-3.5
2,041,815	-		ABCV34_RS09550	0.71	-2.4
2,041,815	-		ABCV34_RS09550	0.71	-3.7
2,041,815	-		ABCV34_RS09550	0.71	-1.7
2,041,853	+		ABCV34_RS09550	0.75	-2.7
2,041,853	+		ABCV34_RS09550	0.75	-3.5
2,041,854	-		ABCV34_RS09550	0.75	-3.4
2,041,854	-		ABCV34_RS09550	0.75	-3.7
2,041,854	-		ABCV34_RS09550	0.75	-3.0
2,041,919	+		ABCV34_RS09550	0.80	-2.5
2,041,919	+		ABCV34_RS09550	0.80	-2.6
2,041,970	+		ABCV34_RS09550	0.85	-1.4
2,041,970	+		ABCV34_RS09550	0.85	-1.4
2,041,970	+		ABCV34_RS09550	0.85	-3.8
2,041,970	+		ABCV34_RS09550	0.85	-2.6
2,041,970	+		ABCV34_RS09550	0.85	-3.5
2,041,971	-		ABCV34_RS09550	0.85	-2.7
2,041,971	-		ABCV34_RS09550	0.85	-2.6
2,041,971	-		ABCV34_RS09550	0.85	-2.4
2,041,971	-		ABCV34_RS09550	0.85	-2.3
2,041,971	-		ABCV34_RS09550	0.85	-3.2
2,041,971	-		ABCV34_RS09550	0.85	-2.4
2,042,055	+				-1.9
2,042,055	+				-1.9
2,042,055	+				-2.4
2,042,055	+				-1.1
2,042,056	-				-4.7
2,042,165	+				-2.1
2,042,166	-				-3.0
2,042,166	-				-2.9
2,042,247	+				-2.6
2,042,247	+				-3.4
2,042,248	-				-2.7
2,042,248	-				-2.2
2,042,248	-				-2.0
2,042,257	+				-2.6
2,042,258	-				-1.3
2,042,270	+				-2.7
2,042,270	+				-1.9
2,042,270	+				-3.2
2,042,271	-				-1.7
2,042,271	-				-1.9
2,042,315	+		ABCV34_RS09555	0.11	-2.8
2,042,315	+		ABCV34_RS09555	0.11	-2.1
2,042,316	-		ABCV34_RS09555	0.11	-2.8
2,042,381	+		ABCV34_RS09555	0.15	-2.1
2,042,381	+		ABCV34_RS09555	0.15	-2.0
2,042,382	-		ABCV34_RS09555	0.15	-3.1
2,042,411	+		ABCV34_RS09555	0.18	-2.8
2,042,411	+		ABCV34_RS09555	0.18	-3.3
2,042,412	-		ABCV34_RS09555	0.18	-2.1
2,042,417	+		ABCV34_RS09555	0.18	-2.9
2,042,417	+		ABCV34_RS09555	0.18	-2.6
2,042,417	+		ABCV34_RS09555	0.18	-2.5
2,042,417	+		ABCV34_RS09555	0.18	-2.5
2,042,417	+		ABCV34_RS09555	0.18	-2.6
2,042,417	+		ABCV34_RS09555	0.18	-3.1
2,042,417	+		ABCV34_RS09555	0.18	-0.7
2,042,417	+		ABCV34_RS09555	0.18	-2.2
2,042,417	+		ABCV34_RS09555	0.18	-2.8
2,042,417	+		ABCV34_RS09555	0.18	-3.0
2,042,418	-		ABCV34_RS09555	0.18	-1.7
2,042,418	-		ABCV34_RS09555	0.18	-3.2
2,042,418	-		ABCV34_RS09555	0.18	-1.9
2,042,418	-		ABCV34_RS09555	0.18	-1.1
2,042,418	-		ABCV34_RS09555	0.18	-2.4
2,042,430	+		ABCV34_RS09555	0.19	-3.6
2,042,479	-		ABCV34_RS09555	0.22	-2.2
2,042,479	-		ABCV34_RS09555	0.22	-4.4
2,042,532	+		ABCV34_RS09555	0.26	-0.6
2,042,532	+		ABCV34_RS09555	0.26	-1.5
2,042,533	-		ABCV34_RS09555	0.26	-2.0
2,042,533	-		ABCV34_RS09555	0.26	-3.4
2,042,533	-		ABCV34_RS09555	0.26	-2.2
2,042,534	+		ABCV34_RS09555	0.26	-2.9
2,042,534	+		ABCV34_RS09555	0.26	-2.3
2,042,534	+		ABCV34_RS09555	0.26	-1.4
2,042,534	+		ABCV34_RS09555	0.26	-1.8
2,042,534	+		ABCV34_RS09555	0.26	-3.7
2,042,534	+		ABCV34_RS09555	0.26	-2.5
2,042,535	-		ABCV34_RS09555	0.26	-2.4
2,042,535	-		ABCV34_RS09555	0.26	-2.6
2,042,535	-		ABCV34_RS09555	0.26	-3.4
2,042,535	-		ABCV34_RS09555	0.26	-3.5
2,042,535	-		ABCV34_RS09555	0.26	-1.7
2,042,535	-		ABCV34_RS09555	0.26	-1.3
2,042,535	-		ABCV34_RS09555	0.26	-1.5
2,042,535	-		ABCV34_RS09555	0.26	-2.7
2,042,535	-		ABCV34_RS09555	0.26	-2.7
2,042,750	+		ABCV34_RS09555	0.42	-2.9
2,042,750	+		ABCV34_RS09555	0.42	-2.2
2,042,751	-		ABCV34_RS09555	0.42	-2.9
2,042,751	-		ABCV34_RS09555	0.42	-2.4
2,042,751	-		ABCV34_RS09555	0.42	-2.5
2,042,751	-		ABCV34_RS09555	0.42	-3.4
2,042,825	+		ABCV34_RS09555	0.47	-3.1
2,042,825	+		ABCV34_RS09555	0.47	-2.9
2,042,825	+		ABCV34_RS09555	0.47	-1.7
2,042,825	+		ABCV34_RS09555	0.47	-2.4
2,042,825	+		ABCV34_RS09555	0.47	-2.9
2,042,825	+		ABCV34_RS09555	0.47	-3.0
2,042,826	-		ABCV34_RS09555	0.47	-2.7
2,042,826	-		ABCV34_RS09555	0.47	-2.2
2,042,826	-		ABCV34_RS09555	0.47	-2.4
2,042,826	-		ABCV34_RS09555	0.47	-2.6
2,042,826	-		ABCV34_RS09555	0.47	-2.4
2,042,826	-		ABCV34_RS09555	0.47	-3.1
2,043,131	+		ABCV34_RS09555	0.69	-2.7