Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09150

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
1,957,234	+		ABCV34_RS09145	0.51	-2.7
1,957,234	+		ABCV34_RS09145	0.51	-3.0
1,957,234	+		ABCV34_RS09145	0.51	-3.7
1,957,234	+		ABCV34_RS09145	0.51	-4.5
1,957,235	-		ABCV34_RS09145	0.51	-3.2
1,957,379	+		ABCV34_RS09145	0.60	-2.8
1,957,379	+		ABCV34_RS09145	0.60	-4.2
1,957,379	+		ABCV34_RS09145	0.60	-3.6
1,957,380	-		ABCV34_RS09145	0.60	-2.0
1,957,380	-		ABCV34_RS09145	0.60	-3.1
1,957,380	-		ABCV34_RS09145	0.60	-3.5
1,957,406	+		ABCV34_RS09145	0.62	-3.2
1,957,406	+		ABCV34_RS09145	0.62	-3.0
1,957,406	+		ABCV34_RS09145	0.62	-2.0
1,957,406	+		ABCV34_RS09145	0.62	-4.0
1,957,407	-		ABCV34_RS09145	0.62	-3.5
1,957,407	-		ABCV34_RS09145	0.62	-3.9
1,957,407	-		ABCV34_RS09145	0.62	-2.6
1,957,407	-		ABCV34_RS09145	0.62	-2.1
1,957,407	-		ABCV34_RS09145	0.62	-2.8
1,957,407	-		ABCV34_RS09145	0.62	-2.6
1,957,407	-		ABCV34_RS09145	0.62	-1.8
1,957,407	-		ABCV34_RS09145	0.62	-3.3
1,957,553	+		ABCV34_RS09145	0.71	-2.0
1,958,003	-				-2.9
1,958,006	+				-2.7
1,958,006	+				-2.2
1,958,007	-				-2.5
1,958,018	+				-2.0
1,958,018	+				-3.0
1,958,018	+				-3.4
1,958,018	+				-2.2
1,958,018	+				-1.9
1,958,018	+				-3.2
1,958,019	-				-2.6
1,958,019	-				-2.2
1,958,019	-				-3.4
1,958,019	-				-2.3
1,958,019	-				-2.8
1,958,019	-				-2.0
1,958,019	-				-2.5
1,958,019	-				-3.0
1,958,019	-				-2.7
1,958,019	-				-3.0
1,958,068	+				-2.1
1,958,069	-				-2.0
1,958,069	-				-2.1
1,958,069	-				-1.6
1,958,069	-				-3.4
1,958,095	+				-2.8
1,958,095	+				-2.2
1,958,095	+				-3.1
1,958,095	+				-2.4
1,958,095	+				-1.7
1,958,095	+				-2.5
1,958,095	+				-1.8
1,958,095	+				-3.0
1,958,095	+				-4.1
1,958,095	+				-1.9
1,958,096	-				-1.4
1,958,096	-				-2.4
1,958,257	+		ABCV34_RS09150	0.24	-3.3
1,958,258	-		ABCV34_RS09150	0.24	-2.4
1,958,258	-		ABCV34_RS09150	0.24	-2.4
1,958,344	+		ABCV34_RS09150	0.32	-4.2
1,958,344	+		ABCV34_RS09150	0.32	-2.1
1,958,344	+		ABCV34_RS09150	0.32	-2.0
1,958,344	+		ABCV34_RS09150	0.32	-2.8
1,958,344	+		ABCV34_RS09150	0.32	-2.2
1,958,344	+		ABCV34_RS09150	0.32	-2.1
1,958,344	+		ABCV34_RS09150	0.32	-1.7
1,958,344	+		ABCV34_RS09150	0.32	-4.1
1,958,345	-		ABCV34_RS09150	0.32	-2.3
1,958,345	-		ABCV34_RS09150	0.32	-3.0
1,958,345	-		ABCV34_RS09150	0.32	-3.7
1,958,345	-		ABCV34_RS09150	0.32	-3.0
1,958,345	-		ABCV34_RS09150	0.32	-2.9
1,958,398	+		ABCV34_RS09150	0.37	-2.8
1,958,398	+		ABCV34_RS09150	0.37	-2.0
1,958,398	+		ABCV34_RS09150	0.37	-2.8
1,958,398	+		ABCV34_RS09150	0.37	-2.5
1,958,398	+		ABCV34_RS09150	0.37	-1.7
1,958,398	+		ABCV34_RS09150	0.37	-2.9
1,958,398	+		ABCV34_RS09150	0.37	-2.9
1,958,399	-		ABCV34_RS09150	0.37	-1.5
1,958,399	-		ABCV34_RS09150	0.37	-2.7
1,958,399	-		ABCV34_RS09150	0.37	-3.5
1,958,461	+		ABCV34_RS09150	0.43	-1.2
1,958,461	+		ABCV34_RS09150	0.43	-3.3
1,958,461	+		ABCV34_RS09150	0.43	-2.9
1,958,461	+		ABCV34_RS09150	0.43	-2.1
1,958,461	+		ABCV34_RS09150	0.43	-3.3
1,958,461	+		ABCV34_RS09150	0.43	-1.5
1,958,461	+		ABCV34_RS09150	0.43	-2.8
1,958,461	+		ABCV34_RS09150	0.43	-2.8
1,958,461	+		ABCV34_RS09150	0.43	-3.6
1,958,461	+		ABCV34_RS09150	0.43	-3.8
1,958,461	+		ABCV34_RS09150	0.43	-3.0
1,958,461	+		ABCV34_RS09150	0.43	-3.4
1,958,461	+		ABCV34_RS09150	0.43	-2.5
1,958,462	-		ABCV34_RS09150	0.43	-2.0
1,958,462	-		ABCV34_RS09150	0.43	-2.4
1,958,462	-		ABCV34_RS09150	0.43	-3.6
1,958,462	-		ABCV34_RS09150	0.43	-2.2
1,958,462	-		ABCV34_RS09150	0.43	-2.9
1,958,462	-		ABCV34_RS09150	0.43	-3.5
1,958,462	-		ABCV34_RS09150	0.43	-1.9
1,958,462	-		ABCV34_RS09150	0.43	-3.4
1,958,487	+		ABCV34_RS09150	0.45	-2.1
1,958,487	+		ABCV34_RS09150	0.45	-3.2
1,958,488	-		ABCV34_RS09150	0.45	-2.2
1,958,488	-		ABCV34_RS09150	0.45	-2.1
1,958,488	-		ABCV34_RS09150	0.45	-3.0
1,958,488	-		ABCV34_RS09150	0.45	-3.5
1,958,488	-		ABCV34_RS09150	0.45	-2.4
1,958,488	-		ABCV34_RS09150	0.45	-3.7
1,958,575	+		ABCV34_RS09150	0.53	-3.0
1,958,575	+		ABCV34_RS09150	0.53	-1.5
1,958,576	-		ABCV34_RS09150	0.53	-2.8
1,958,641	+		ABCV34_RS09150	0.59	-2.3
1,958,641	+		ABCV34_RS09150	0.59	-1.5
1,958,642	-		ABCV34_RS09150	0.59	-3.1
1,958,642	-		ABCV34_RS09150	0.59	-2.7
1,958,678	+		ABCV34_RS09150	0.62	-2.5
1,958,679	-		ABCV34_RS09150	0.62	-2.1
1,958,679	-		ABCV34_RS09150	0.62	-1.6
1,958,679	-		ABCV34_RS09150	0.62	-1.7
1,958,731	+		ABCV34_RS09150	0.67	-3.6
1,958,731	+		ABCV34_RS09150	0.67	-1.1
1,958,731	+		ABCV34_RS09150	0.67	-2.8
1,958,732	-		ABCV34_RS09150	0.67	-2.4
1,958,732	-		ABCV34_RS09150	0.67	-2.4
1,958,732	-		ABCV34_RS09150	0.67	-2.6
1,959,054	+				-2.1
1,959,054	+				-3.5
1,959,054	+				-2.6
1,959,054	+				-2.9
1,959,055	-				-2.1
1,959,055	-				-0.1
1,959,055	-				-2.5
1,959,055	-				-3.0
1,959,086	+				-3.0
1,959,086	+				-4.3
1,959,086	+				-4.1
1,959,158	-				-2.2
1,959,204	+				-1.1
1,959,205	-				-2.6
1,959,214	+				-2.1
1,959,214	+				-2.3
1,959,215	-				-1.9
1,959,218	-				-1.1
1,959,219	+				-2.1
1,959,219	+				-3.1
1,959,219	+				-2.4
1,959,219	+				-4.5
1,959,220	-				-2.4
1,959,223	+				-3.3
1,959,223	+				-2.7
1,959,223	+				-5.3
1,959,223	+				-3.5
1,959,224	-				-2.3
1,959,224	-				-1.9
1,959,224	-				-2.4
1,959,225	+				-3.2
1,959,225	+				-3.9
1,959,282	-				-2.4
1,959,282	-				-2.9
1,959,377	+				-4.1
1,959,377	+				-2.6
1,959,377	+				-2.8
1,959,377	+				-2.4
1,959,377	+				-2.1
1,959,377	+				-1.1
1,959,377	+				-2.7
1,959,377	+				-2.1
1,959,377	+				-2.8
1,959,377	+				-3.0
1,959,378	-				-3.1
1,959,378	-				-2.2
1,959,378	-				-3.5
1,959,378	-				-3.5
1,959,378	-				-2.4
1,959,378	-				-1.3
1,959,378	-				-2.5
1,959,378	-				-3.4
1,959,378	-				-2.3
1,959,378	-				-3.7
1,959,378	-				-3.2
1,959,393	+				-1.1
1,959,455	+				-2.8
1,959,509	-		ABCV34_RS09155	0.13	-3.4
1,959,584	+		ABCV34_RS09155	0.23	-1.6
1,959,585	-		ABCV34_RS09155	0.24	-2.1
1,959,605	+		ABCV34_RS09155	0.26	-4.7
1,959,606	-		ABCV34_RS09155	0.26	-3.4
1,959,606	-		ABCV34_RS09155	0.26	-4.3
1,959,606	-		ABCV34_RS09155	0.26	-1.9
1,959,606	-		ABCV34_RS09155	0.26	-2.7
1,959,698	+		ABCV34_RS09155	0.39	-2.7
1,959,699	-		ABCV34_RS09155	0.39	-2.7
1,959,699	-		ABCV34_RS09155	0.39	-3.4
1,959,699	-		ABCV34_RS09155	0.39	-3.0
1,959,772	+		ABCV34_RS09155	0.49	-2.7
1,959,802	+		ABCV34_RS09155	0.53	-3.5
1,959,803	-		ABCV34_RS09155	0.53	-3.1
1,959,861	+		ABCV34_RS09155	0.61	-3.3
1,959,861	+		ABCV34_RS09155	0.61	-4.8
1,959,861	+		ABCV34_RS09155	0.61	-3.0
1,959,861	+		ABCV34_RS09155	0.61	-1.9
1,959,862	-		ABCV34_RS09155	0.62	-2.5
1,959,862	-		ABCV34_RS09155	0.62	-3.3
1,960,026	+		ABCV34_RS09155	0.84	-2.6
1,960,026	+		ABCV34_RS09155	0.84	-2.5
1,960,026	+		ABCV34_RS09155	0.84	-2.2
1,960,026	+		ABCV34_RS09155	0.84	-3.6
1,960,026	+		ABCV34_RS09155	0.84	-3.7
1,960,026	+		ABCV34_RS09155	0.84	-2.5
1,960,026	+		ABCV34_RS09155	0.84	-2.7
1,960,026	+		ABCV34_RS09155	0.84	-1.4
1,960,026	+		ABCV34_RS09155	0.84	-2.7
1,960,026	+		ABCV34_RS09155	0.84	-2.6
1,960,026	+		ABCV34_RS09155	0.84	-3.6
1,960,026	+		ABCV34_RS09155	0.84	-3.5
1,960,026	+		ABCV34_RS09155	0.84	-2.5
1,960,026	+		ABCV34_RS09155	0.84	-1.7
1,960,027	-		ABCV34_RS09155	0.84	-2.6
1,960,027	-		ABCV34_RS09155	0.84	-2.9
1,960,027	-		ABCV34_RS09155	0.84	-2.9
1,960,027	-		ABCV34_RS09155	0.84	-1.4
1,960,027	-		ABCV34_RS09155	0.84	-3.1
1,960,027	-		ABCV34_RS09155	0.84	-2.0
1,960,027	-		ABCV34_RS09155	0.84	-1.8
1,960,027	-		ABCV34_RS09155	0.84	-2.8
1,960,027	-		ABCV34_RS09155	0.84	-2.1
1,960,027	-		ABCV34_RS09155	0.84	-3.0
1,960,027	-		ABCV34_RS09155	0.84	-3.7
1,960,027	-		ABCV34_RS09155	0.84	-3.3
1,960,027	-		ABCV34_RS09155	0.84	-2.7
1,960,028	+		ABCV34_RS09155	0.84	-2.5
1,960,028	+		ABCV34_RS09155	0.84	-3.9
1,960,028	+		ABCV34_RS09155	0.84	-1.6
1,960,028	+		ABCV34_RS09155	0.84	-2.8
1,960,028	+		ABCV34_RS09155	0.84	-3.2
1,960,028	+		ABCV34_RS09155	0.84	-4.2
1,960,028	+		ABCV34_RS09155	0.84	-2.1
1,960,028	+		ABCV34_RS09155	0.84	-2.9
1,960,029	-		ABCV34_RS09155	0.84	-1.1
1,960,029	-		ABCV34_RS09155	0.84	-3.3
1,960,029	-		ABCV34_RS09155	0.84	-4.4
1,960,029	-		ABCV34_RS09155	0.84	-2.0