Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS07450

Experiment: Anaerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS07445 and ABCV34_RS07450 are separated by 144 nucleotidesABCV34_RS07450 and ABCV34_RS07455 are separated by 88 nucleotides ABCV34_RS07445: ABCV34_RS07445 - molecular chaperone DnaK, at 1,599,902 to 1,601,824 _RS07445 ABCV34_RS07450: ABCV34_RS07450 - nucleotide exchange factor GrpE, at 1,601,969 to 1,602,553 _RS07450 ABCV34_RS07455: ABCV34_RS07455 - ferrochelatase, at 1,602,642 to 1,603,688 _RS07455 Position (kb) 1601 1602 1603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1602.595 kb on + strandat 1602.596 kb on - strandat 1602.596 kb on - strandat 1602.596 kb on - strandat 1602.596 kb on - strandat 1602.643 kb on + strandat 1602.644 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH5.5
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1,602,595 + -3.7
1,602,596 - -2.6
1,602,596 - -3.8
1,602,596 - -2.3
1,602,596 - -3.1
1,602,643 + -1.8
1,602,644 - -1.8

Or see this region's nucleotide sequence