Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05845

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
1,268,716	+		ABCV34_RS05840	0.12	-1.2
1,268,757	+		ABCV34_RS05840	0.17	-2.5
1,268,829	+		ABCV34_RS05840	0.25	-5.4
1,268,830	-		ABCV34_RS05840	0.25	-3.8
1,268,938	+		ABCV34_RS05840	0.38	-4.4
1,268,938	+		ABCV34_RS05840	0.38	-3.2
1,268,938	+		ABCV34_RS05840	0.38	-3.0
1,268,938	+		ABCV34_RS05840	0.38	+1.1
1,268,938	+		ABCV34_RS05840	0.38	-3.7
1,268,938	+		ABCV34_RS05840	0.38	-3.6
1,268,938	+		ABCV34_RS05840	0.38	-2.6
1,268,938	+		ABCV34_RS05840	0.38	-2.5
1,268,938	+		ABCV34_RS05840	0.38	-3.2
1,268,938	+		ABCV34_RS05840	0.38	-1.9
1,268,938	+		ABCV34_RS05840	0.38	+0.1
1,268,938	+		ABCV34_RS05840	0.38	+0.1
1,268,938	+		ABCV34_RS05840	0.38	-3.3
1,268,938	+		ABCV34_RS05840	0.38	+1.7
1,268,939	-		ABCV34_RS05840	0.38	-0.9
1,268,939	-		ABCV34_RS05840	0.38	-3.6
1,268,939	-		ABCV34_RS05840	0.38	-3.8
1,268,939	-		ABCV34_RS05840	0.38	-3.9
1,268,939	-		ABCV34_RS05840	0.38	+1.1
1,268,939	-		ABCV34_RS05840	0.38	-2.5
1,268,939	-		ABCV34_RS05840	0.38	+0.1
1,268,939	-		ABCV34_RS05840	0.38	-2.9
1,268,939	-		ABCV34_RS05840	0.38	-2.9
1,268,939	-		ABCV34_RS05840	0.38	-4.0
1,268,939	-		ABCV34_RS05840	0.38	-4.5
1,268,939	-		ABCV34_RS05840	0.38	-2.4
1,268,939	-		ABCV34_RS05840	0.38	-4.5
1,268,939	-		ABCV34_RS05840	0.38	-3.2
1,268,940	+		ABCV34_RS05840	0.38	-3.6
1,268,940	+		ABCV34_RS05840	0.38	-2.5
1,268,940	+		ABCV34_RS05840	0.38	-4.6
1,268,940	+		ABCV34_RS05840	0.38	-2.8
1,268,940	+		ABCV34_RS05840	0.38	+1.1
1,268,940	+		ABCV34_RS05840	0.38	-4.6
1,268,940	+		ABCV34_RS05840	0.38	-4.8
1,268,940	+		ABCV34_RS05840	0.38	+1.7
1,268,940	+		ABCV34_RS05840	0.38	-2.9
1,268,940	+		ABCV34_RS05840	0.38	+0.1
1,268,940	+		ABCV34_RS05840	0.38	-3.8
1,268,940	+		ABCV34_RS05840	0.38	+1.1
1,268,940	+		ABCV34_RS05840	0.38	-3.9
1,268,940	+		ABCV34_RS05840	0.38	-1.6
1,268,940	+		ABCV34_RS05840	0.38	-3.9
1,268,941	-		ABCV34_RS05840	0.39	-1.5
1,268,941	-		ABCV34_RS05840	0.39	-2.7
1,268,941	-		ABCV34_RS05840	0.39	+0.1
1,268,941	-		ABCV34_RS05840	0.39	+0.1
1,268,941	-		ABCV34_RS05840	0.39	-6.3
1,268,941	-		ABCV34_RS05840	0.39	+1.7
1,268,941	-		ABCV34_RS05840	0.39	-3.5
1,268,941	-		ABCV34_RS05840	0.39	+1.7
1,268,941	-		ABCV34_RS05840	0.39	-3.6
1,268,941	-		ABCV34_RS05840	0.39	+0.1
1,268,941	-		ABCV34_RS05840	0.39	-4.1
1,268,941	-		ABCV34_RS05840	0.39	-3.2
1,268,941	-		ABCV34_RS05840	0.39	-2.2
1,268,941	-		ABCV34_RS05840	0.39	-4.8
1,268,941	-		ABCV34_RS05840	0.39	-1.9
1,268,941	-		ABCV34_RS05840	0.39	-3.6
1,269,008	+		ABCV34_RS05840	0.46	-4.2
1,269,068	-		ABCV34_RS05840	0.54	+0.1
1,269,068	-		ABCV34_RS05840	0.54	-2.9
1,269,068	-		ABCV34_RS05840	0.54	-3.5
1,269,068	-		ABCV34_RS05840	0.54	-3.1
1,269,068	-		ABCV34_RS05840	0.54	-3.2
1,269,279	+		ABCV34_RS05840	0.78	-3.8
1,269,279	+		ABCV34_RS05840	0.78	-1.9
1,269,279	+		ABCV34_RS05840	0.78	-3.8
1,269,279	+		ABCV34_RS05840	0.78	+0.1
1,269,331	+		ABCV34_RS05840	0.85	+0.1
1,269,331	+		ABCV34_RS05840	0.85	-3.5
1,269,331	+		ABCV34_RS05840	0.85	-2.7
1,269,331	+		ABCV34_RS05840	0.85	+0.1
1,269,332	-		ABCV34_RS05840	0.85	+0.1
1,269,332	-		ABCV34_RS05840	0.85	-3.5
1,269,332	-		ABCV34_RS05840	0.85	-4.3
1,269,332	-		ABCV34_RS05840	0.85	-3.9
1,269,332	-		ABCV34_RS05840	0.85	+0.1
1,269,332	-		ABCV34_RS05840	0.85	-4.1
1,269,332	-		ABCV34_RS05840	0.85	-3.3
1,269,332	-		ABCV34_RS05840	0.85	-3.0
1,269,373	-		ABCV34_RS05840	0.90	-4.7
1,269,411	+				-3.8
1,269,411	+				-1.5
1,269,412	-				-3.4
1,269,412	-				-4.8
1,269,412	-				-1.9
1,269,557	+				-1.9
1,269,558	-				-1.7
1,269,582	-		ABCV34_RS05845	0.12	+0.1
1,269,699	+		ABCV34_RS05845	0.26	-0.9
1,269,699	+		ABCV34_RS05845	0.26	-3.4
1,269,700	-		ABCV34_RS05845	0.26	-3.2
1,269,963	+		ABCV34_RS05845	0.56	+0.1
1,269,963	+		ABCV34_RS05845	0.56	+1.1
1,269,963	+		ABCV34_RS05845	0.56	-3.0
1,269,963	+		ABCV34_RS05845	0.56	-3.6
1,269,964	-		ABCV34_RS05845	0.56	-4.7
1,269,964	-		ABCV34_RS05845	0.56	-2.9
1,269,964	-		ABCV34_RS05845	0.56	-4.3
1,269,964	-		ABCV34_RS05845	0.56	-2.0
1,270,101	+		ABCV34_RS05845	0.72	-2.5
1,270,101	+		ABCV34_RS05845	0.72	-3.6
1,270,101	+		ABCV34_RS05845	0.72	+0.1
1,270,101	+		ABCV34_RS05845	0.72	-2.5
1,270,101	+		ABCV34_RS05845	0.72	-3.5
1,270,101	+		ABCV34_RS05845	0.72	-5.3
1,270,102	-		ABCV34_RS05845	0.72	+0.1
1,270,102	-		ABCV34_RS05845	0.72	-4.0
1,270,102	-		ABCV34_RS05845	0.72	-4.7
1,270,102	-		ABCV34_RS05845	0.72	-0.9
1,270,102	-		ABCV34_RS05845	0.72	-4.5
1,270,102	-		ABCV34_RS05845	0.72	-4.0
1,270,102	-		ABCV34_RS05845	0.72	-2.2
1,270,102	-		ABCV34_RS05845	0.72	+1.7
1,270,102	-		ABCV34_RS05845	0.72	-1.7
1,270,102	-		ABCV34_RS05845	0.72	-2.2
1,270,102	-		ABCV34_RS05845	0.72	-2.7
1,270,102	-		ABCV34_RS05845	0.72	-3.9
1,270,125	+		ABCV34_RS05845	0.74	-3.3
1,270,125	+		ABCV34_RS05845	0.74	-2.7
1,270,125	+		ABCV34_RS05845	0.74	-0.9
1,270,125	+		ABCV34_RS05845	0.74	-5.3
1,270,125	+		ABCV34_RS05845	0.74	-1.9
1,270,125	+		ABCV34_RS05845	0.74	+0.1
1,270,126	-		ABCV34_RS05845	0.74	-4.5
1,270,126	-		ABCV34_RS05845	0.74	+1.1
1,270,126	-		ABCV34_RS05845	0.74	-4.0
1,270,126	-		ABCV34_RS05845	0.74	-5.4
1,270,126	-		ABCV34_RS05845	0.74	+1.1
1,270,126	-		ABCV34_RS05845	0.74	-2.6
1,270,126	-		ABCV34_RS05845	0.74	+1.1
1,270,126	-		ABCV34_RS05845	0.74	-4.5
1,270,126	-		ABCV34_RS05845	0.74	-3.3
1,270,126	-		ABCV34_RS05845	0.74	+2.1
1,270,126	-		ABCV34_RS05845	0.74	+0.1
1,270,126	-		ABCV34_RS05845	0.74	-4.3
1,270,126	-		ABCV34_RS05845	0.74	+1.1
1,270,140	+		ABCV34_RS05845	0.76	-4.5
1,270,215	+		ABCV34_RS05845	0.85	-3.7
1,270,215	+		ABCV34_RS05845	0.85	-3.6
1,270,215	+		ABCV34_RS05845	0.85	-2.2
1,270,215	+		ABCV34_RS05845	0.85	-0.9
1,270,215	+		ABCV34_RS05845	0.85	+0.1
1,270,215	+		ABCV34_RS05845	0.85	-2.5
1,270,215	+		ABCV34_RS05845	0.85	-1.2
1,270,216	-		ABCV34_RS05845	0.85	-4.9
1,270,216	-		ABCV34_RS05845	0.85	-5.3
1,270,216	-		ABCV34_RS05845	0.85	-4.0
1,270,216	-		ABCV34_RS05845	0.85	-4.3
1,270,216	-		ABCV34_RS05845	0.85	-3.5
1,270,216	-		ABCV34_RS05845	0.85	-2.6
1,270,216	-		ABCV34_RS05845	0.85	-5.2
1,270,216	-		ABCV34_RS05845	0.85	-4.7
1,270,216	-		ABCV34_RS05845	0.85	-3.0
1,270,216	-		ABCV34_RS05845	0.85	-2.8
1,270,216	-		ABCV34_RS05845	0.85	-4.0
1,270,216	-		ABCV34_RS05845	0.85	-3.6
1,270,216	-		ABCV34_RS05845	0.85	-4.3
1,270,216	-		ABCV34_RS05845	0.85	-3.2
1,270,263	+				-3.8
1,270,263	+				+0.1
1,270,263	+				-3.6
1,270,264	-				-4.8
1,270,264	-				-4.9
1,270,264	-				+1.1
1,270,329	+				+0.1
1,270,329	+				-2.5
1,270,330	-				+0.1
1,270,342	+				+0.1
1,270,343	-				-2.5
1,270,364	+				-1.6
1,270,365	-				-4.9
1,270,373	+				-3.5
1,270,373	+				-2.2
1,270,373	+				-3.1
1,270,373	+				-4.0
1,270,373	+				-4.0
1,270,374	-				-2.4
1,270,374	-				-2.7
1,270,374	-				+0.1
1,270,374	-				-3.4
1,270,374	-				-3.7
1,270,374	-				+1.1
1,270,374	-				-3.6
1,270,374	-				+0.1
1,270,374	-				+1.1
1,270,374	-				-2.9
1,270,374	-				+0.1
1,270,523	+		ABCV34_RS05850	0.13	+1.1
1,270,523	+		ABCV34_RS05850	0.13	-3.2
1,270,524	-		ABCV34_RS05850	0.13	-3.3
1,270,524	-		ABCV34_RS05850	0.13	+2.4
1,270,524	-		ABCV34_RS05850	0.13	-3.1
1,270,524	-		ABCV34_RS05850	0.13	+2.1
1,270,717	+		ABCV34_RS05850	0.51	-3.0
1,270,717	+		ABCV34_RS05850	0.51	-4.0
1,270,718	-		ABCV34_RS05850	0.51	+1.1
1,270,718	-		ABCV34_RS05850	0.51	-4.6
1,270,718	-		ABCV34_RS05850	0.51	-3.3
1,270,734	+		ABCV34_RS05850	0.54	-0.9
1,270,734	+		ABCV34_RS05850	0.54	+0.1
1,270,734	+		ABCV34_RS05850	0.54	-5.6
1,270,735	-		ABCV34_RS05850	0.54	-4.5
1,270,735	-		ABCV34_RS05850	0.54	-4.3
1,270,769	+		ABCV34_RS05850	0.61	-4.3
1,270,769	+		ABCV34_RS05850	0.61	-4.9
1,270,769	+		ABCV34_RS05850	0.61	+1.1
1,270,769	+		ABCV34_RS05850	0.61	+1.1
1,270,769	+		ABCV34_RS05850	0.61	-4.3
1,270,769	+		ABCV34_RS05850	0.61	+0.1
1,270,770	-		ABCV34_RS05850	0.61	+1.7
1,270,770	-		ABCV34_RS05850	0.61	-2.8
1,270,777	+		ABCV34_RS05850	0.63	-1.1
1,270,783	+		ABCV34_RS05850	0.64	-3.2
1,270,783	+		ABCV34_RS05850	0.64	-3.5
1,270,783	+		ABCV34_RS05850	0.64	-3.6
1,270,783	+		ABCV34_RS05850	0.64	-3.1
1,270,783	+		ABCV34_RS05850	0.64	-4.5
1,270,783	+		ABCV34_RS05850	0.64	-5.9
1,270,784	-		ABCV34_RS05850	0.64	-4.2
1,270,784	-		ABCV34_RS05850	0.64	-3.1
1,270,784	-		ABCV34_RS05850	0.64	-3.9
1,270,784	-		ABCV34_RS05850	0.64	-3.9
1,270,784	-		ABCV34_RS05850	0.64	-3.3
1,270,784	-		ABCV34_RS05850	0.64	+1.1
1,270,784	-		ABCV34_RS05850	0.64	-3.1
1,270,792	+		ABCV34_RS05850	0.65	+2.1
1,270,792	+		ABCV34_RS05850	0.65	-3.1
1,270,792	+		ABCV34_RS05850	0.65	+0.7
1,270,792	+		ABCV34_RS05850	0.65	-3.4
1,270,792	+		ABCV34_RS05850	0.65	+2.4
1,270,792	+		ABCV34_RS05850	0.65	-2.9
1,270,792	+		ABCV34_RS05850	0.65	+0.1
1,270,792	+		ABCV34_RS05850	0.65	-4.1
1,270,793	-		ABCV34_RS05850	0.66	-3.4
1,270,793	-		ABCV34_RS05850	0.66	-3.5
1,270,793	-		ABCV34_RS05850	0.66	-4.1
1,270,793	-		ABCV34_RS05850	0.66	-3.0
1,270,793	-		ABCV34_RS05850	0.66	-4.3
1,270,793	-		ABCV34_RS05850	0.66	-3.7
1,270,793	-		ABCV34_RS05850	0.66	-4.5
1,270,793	-		ABCV34_RS05850	0.66	+1.1
1,270,912	+		ABCV34_RS05850	0.89	-4.4
1,270,912	+		ABCV34_RS05850	0.89	-3.4
1,270,912	+		ABCV34_RS05850	0.89	-4.3
1,270,913	-		ABCV34_RS05850	0.89	-3.2
1,270,913	-		ABCV34_RS05850	0.89	-4.0
1,271,032	+				+0.1
1,271,032	+				-4.1
1,271,032	+				-4.7
1,271,032	+				+1.7
1,271,033	-				+0.7
1,271,033	-				-2.9
1,271,296	+		ABCV34_RS05855	0.83	-2.1
1,271,296	+		ABCV34_RS05855	0.83	+0.1
1,271,296	+		ABCV34_RS05855	0.83	-4.1
1,271,296	+		ABCV34_RS05855	0.83	-3.1
1,271,297	-		ABCV34_RS05855	0.83	-4.3
1,271,297	-		ABCV34_RS05855	0.83	+0.1
1,271,297	-		ABCV34_RS05855	0.83	-3.2
1,271,318	+		ABCV34_RS05855	0.89	-3.2
1,271,318	+		ABCV34_RS05855	0.89	+1.1