Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS13995

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
2,965,533	+		ABCV34_RS13985	0.85	-4.3
2,965,534	-		ABCV34_RS13985	0.85	-3.8
2,965,791	-				-5.8
2,965,791	-				-3.0
2,965,791	-				-2.2
2,965,834	+				-3.2
2,965,834	+				-3.3
2,965,835	-				-4.5
2,965,835	-				-2.2
2,965,835	-				-1.9
2,965,953	+		ABCV34_RS13990	0.22	-3.2
2,965,953	+		ABCV34_RS13990	0.22	-2.4
2,965,953	+		ABCV34_RS13990	0.22	-3.1
2,965,953	+		ABCV34_RS13990	0.22	-3.1
2,965,953	+		ABCV34_RS13990	0.22	-3.9
2,965,953	+		ABCV34_RS13990	0.22	-2.4
2,965,953	+		ABCV34_RS13990	0.22	-2.8
2,965,954	-		ABCV34_RS13990	0.22	-1.9
2,965,954	-		ABCV34_RS13990	0.22	-2.1
2,965,954	-		ABCV34_RS13990	0.22	-3.6
2,965,954	-		ABCV34_RS13990	0.22	-3.0
2,965,954	-		ABCV34_RS13990	0.22	-4.2
2,966,129	-		ABCV34_RS13990	0.50	-2.9
2,966,160	+		ABCV34_RS13990	0.56	-4.2
2,966,160	+		ABCV34_RS13990	0.56	-4.1
2,966,160	+		ABCV34_RS13990	0.56	-3.6
2,966,160	+		ABCV34_RS13990	0.56	-3.9
2,966,161	-		ABCV34_RS13990	0.56	-4.6
2,966,194	+		ABCV34_RS13990	0.61	-3.8
2,966,194	+		ABCV34_RS13990	0.61	-3.4
2,966,194	+		ABCV34_RS13990	0.61	-2.5
2,966,194	+		ABCV34_RS13990	0.61	-3.5
2,966,194	+		ABCV34_RS13990	0.61	-2.7
2,966,194	+		ABCV34_RS13990	0.61	-4.6
2,966,194	+		ABCV34_RS13990	0.61	-3.1
2,966,194	+		ABCV34_RS13990	0.61	-3.0
2,966,194	+		ABCV34_RS13990	0.61	-3.6
2,966,195	-		ABCV34_RS13990	0.61	-2.6
2,966,195	-		ABCV34_RS13990	0.61	-2.3
2,966,195	-		ABCV34_RS13990	0.61	-3.1
2,966,195	-		ABCV34_RS13990	0.61	-3.0
2,966,195	-		ABCV34_RS13990	0.61	-4.3
2,966,195	-		ABCV34_RS13990	0.61	-2.3
2,966,263	+		ABCV34_RS13990	0.72	-2.7
2,966,263	+		ABCV34_RS13990	0.72	-2.1
2,966,264	-		ABCV34_RS13990	0.73	-3.8
2,966,362	-		ABCV34_RS13990	0.89	-3.5
2,966,362	-		ABCV34_RS13990	0.89	-2.6
2,966,362	-		ABCV34_RS13990	0.89	-2.4
2,966,505	+				-3.7
2,966,505	+				-2.6
2,966,505	+				-2.1
2,966,506	-				-1.3
2,966,506	-				-3.0
2,966,532	-				-2.9
2,966,638	+		ABCV34_RS13995	0.25	-0.3
2,966,638	+		ABCV34_RS13995	0.25	-3.1
2,966,639	-		ABCV34_RS13995	0.26	-2.1
2,966,639	-		ABCV34_RS13995	0.26	-2.6
2,966,639	-		ABCV34_RS13995	0.26	-2.8
2,966,710	+		ABCV34_RS13995	0.38	-3.2
2,966,710	+		ABCV34_RS13995	0.38	-5.2
2,966,710	+		ABCV34_RS13995	0.38	-3.8
2,966,710	+		ABCV34_RS13995	0.38	-1.1
2,966,711	-		ABCV34_RS13995	0.38	-3.1
2,966,734	-		ABCV34_RS13995	0.42	-2.7
2,966,815	-		ABCV34_RS13995	0.57	-1.4
2,966,815	-		ABCV34_RS13995	0.57	-2.5
2,966,815	-		ABCV34_RS13995	0.57	-2.6
2,966,867	+		ABCV34_RS13995	0.66	-1.4
2,966,867	+		ABCV34_RS13995	0.66	-2.4
2,966,867	+		ABCV34_RS13995	0.66	-3.9
2,966,867	+		ABCV34_RS13995	0.66	-1.9
2,966,867	+		ABCV34_RS13995	0.66	-2.4
2,966,867	+		ABCV34_RS13995	0.66	-1.3
2,966,867	+		ABCV34_RS13995	0.66	-3.5
2,966,868	-		ABCV34_RS13995	0.66	-2.2
2,966,868	-		ABCV34_RS13995	0.66	-1.3
2,966,868	-		ABCV34_RS13995	0.66	-3.1
2,966,868	-		ABCV34_RS13995	0.66	-3.8
2,966,868	-		ABCV34_RS13995	0.66	-3.4
2,966,868	-		ABCV34_RS13995	0.66	-4.0
2,967,006	+				-1.7
2,967,007	-				-2.6
2,967,029	+				-3.4
2,967,030	-				-3.9
2,967,030	-				-2.5
2,967,054	+				-2.4
2,967,054	+				-2.1
2,967,054	+				-1.6
2,967,054	+				-4.1
2,967,054	+				-1.9
2,967,055	-				-2.3
2,967,055	-				-2.8
2,967,105	-				-1.4
2,967,105	-				-3.1
2,967,116	+				-2.6
2,967,117	-				-1.3
2,967,215	+				-3.7
2,967,215	+				-1.1
2,967,215	+				-3.8
2,967,216	-				-2.4
2,967,216	-				-2.3
2,967,467	+		ABCV34_RS14000	0.30	-2.4
2,967,477	+		ABCV34_RS14000	0.31	-2.7
2,967,477	+		ABCV34_RS14000	0.31	-2.1
2,967,477	+		ABCV34_RS14000	0.31	-3.6
2,967,478	-		ABCV34_RS14000	0.31	-1.6
2,967,478	-		ABCV34_RS14000	0.31	-2.9
2,967,796	+		ABCV34_RS14000	0.60	-5.4
2,967,866	+		ABCV34_RS14000	0.66	-3.3
2,967,867	-		ABCV34_RS14000	0.66	-3.1