Experiment: mutant library grown in Supernatant; Achromobacter sp. TBS_048 grown in R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02163 and MPMX20_02164 are separated by 96 nucleotides MPMX20_02164 and MPMX20_02165 are separated by 36 nucleotides MPMX20_02165 and MPMX20_02166 are separated by 99 nucleotides
MPMX20_02163: MPMX20_02163 - putative oxidoreductase, at 2,257,188 to 2,258,006
_02163
MPMX20_02164: MPMX20_02164 - HTH-type transcriptional regulator ZntR, at 2,258,103 to 2,258,471
_02164
MPMX20_02165: MPMX20_02165 - HTH-type transcriptional regulator DmlR, at 2,258,508 to 2,259,443
_02165
MPMX20_02166: MPMX20_02166 - N-ethylmaleimide reductase, at 2,259,543 to 2,260,655
_02166
Position (kb)
2258
2259
2260 Strain fitness (log2 ratio)
-2
-1
0
1 at 2257.570 kb on + strand, within MPMX20_02163 at 2257.579 kb on + strand, within MPMX20_02163 at 2257.660 kb on + strand, within MPMX20_02163 at 2257.668 kb on - strand, within MPMX20_02163 at 2257.668 kb on - strand, within MPMX20_02163 at 2257.716 kb on + strand, within MPMX20_02163 at 2257.770 kb on - strand, within MPMX20_02163 at 2257.792 kb on + strand, within MPMX20_02163 at 2257.810 kb on - strand, within MPMX20_02163 at 2257.829 kb on + strand, within MPMX20_02163 at 2257.829 kb on + strand, within MPMX20_02163 at 2257.829 kb on + strand, within MPMX20_02163 at 2257.829 kb on + strand, within MPMX20_02163 at 2257.829 kb on + strand, within MPMX20_02163 at 2257.837 kb on - strand, within MPMX20_02163 at 2257.837 kb on - strand, within MPMX20_02163 at 2257.837 kb on - strand, within MPMX20_02163 at 2258.037 kb on + strand at 2258.051 kb on - strand at 2258.069 kb on - strand at 2258.167 kb on + strand, within MPMX20_02164 at 2258.229 kb on + strand, within MPMX20_02164 at 2258.245 kb on + strand, within MPMX20_02164 at 2258.260 kb on - strand, within MPMX20_02164 at 2258.278 kb on + strand, within MPMX20_02164 at 2258.278 kb on + strand, within MPMX20_02164 at 2258.286 kb on - strand, within MPMX20_02164 at 2258.286 kb on - strand, within MPMX20_02164 at 2258.416 kb on - strand, within MPMX20_02164 at 2258.450 kb on + strand at 2258.506 kb on - strand at 2258.588 kb on + strand at 2258.653 kb on - strand, within MPMX20_02165 at 2258.849 kb on + strand, within MPMX20_02165 at 2258.873 kb on + strand, within MPMX20_02165 at 2258.905 kb on - strand, within MPMX20_02165 at 2258.911 kb on + strand, within MPMX20_02165 at 2258.911 kb on + strand, within MPMX20_02165 at 2258.992 kb on - strand, within MPMX20_02165 at 2259.018 kb on + strand, within MPMX20_02165 at 2259.026 kb on - strand, within MPMX20_02165 at 2259.140 kb on + strand, within MPMX20_02165 at 2259.282 kb on - strand, within MPMX20_02165 at 2259.328 kb on + strand, within MPMX20_02165 at 2259.377 kb on - strand at 2259.426 kb on + strand at 2259.526 kb on + strand at 2259.544 kb on - strand at 2259.569 kb on + strand at 2259.569 kb on + strand at 2259.587 kb on - strand at 2259.737 kb on + strand, within MPMX20_02166 at 2259.743 kb on + strand, within MPMX20_02166 at 2259.746 kb on - strand, within MPMX20_02166 at 2259.746 kb on - strand, within MPMX20_02166 at 2259.775 kb on - strand, within MPMX20_02166 at 2259.780 kb on - strand, within MPMX20_02166 at 2259.845 kb on + strand, within MPMX20_02166 at 2259.845 kb on + strand, within MPMX20_02166 at 2259.984 kb on - strand, within MPMX20_02166 at 2260.018 kb on + strand, within MPMX20_02166 at 2260.080 kb on - strand, within MPMX20_02166 at 2260.086 kb on + strand, within MPMX20_02166 at 2260.143 kb on + strand, within MPMX20_02166 at 2260.183 kb on + strand, within MPMX20_02166 at 2260.185 kb on - strand, within MPMX20_02166 at 2260.206 kb on + strand, within MPMX20_02166 at 2260.227 kb on - strand, within MPMX20_02166 at 2260.252 kb on + strand, within MPMX20_02166 at 2260.283 kb on + strand, within MPMX20_02166 at 2260.312 kb on + strand, within MPMX20_02166 at 2260.313 kb on - strand, within MPMX20_02166 at 2260.358 kb on - strand, within MPMX20_02166
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Achromobacter sp. TBS_048 grown in R2A remove 2,257,570 + MPMX20_02163 0.47 -2.4 2,257,579 + MPMX20_02163 0.48 +0.6 2,257,660 + MPMX20_02163 0.58 -0.9 2,257,668 - MPMX20_02163 0.59 -0.4 2,257,668 - MPMX20_02163 0.59 +0.2 2,257,716 + MPMX20_02163 0.64 -0.7 2,257,770 - MPMX20_02163 0.71 -0.2 2,257,792 + MPMX20_02163 0.74 -0.0 2,257,810 - MPMX20_02163 0.76 -0.6 2,257,829 + MPMX20_02163 0.78 -0.5 2,257,829 + MPMX20_02163 0.78 -0.4 2,257,829 + MPMX20_02163 0.78 -0.3 2,257,829 + MPMX20_02163 0.78 -0.2 2,257,829 + MPMX20_02163 0.78 +1.0 2,257,837 - MPMX20_02163 0.79 -0.1 2,257,837 - MPMX20_02163 0.79 -0.1 2,257,837 - MPMX20_02163 0.79 +0.3 2,258,037 + -0.5 2,258,051 - +0.3 2,258,069 - -0.1 2,258,167 + MPMX20_02164 0.17 +0.8 2,258,229 + MPMX20_02164 0.34 -0.3 2,258,245 + MPMX20_02164 0.38 -0.5 2,258,260 - MPMX20_02164 0.43 -2.1 2,258,278 + MPMX20_02164 0.47 +1.4 2,258,278 + MPMX20_02164 0.47 +0.8 2,258,286 - MPMX20_02164 0.50 -0.8 2,258,286 - MPMX20_02164 0.50 -0.1 2,258,416 - MPMX20_02164 0.85 +0.2 2,258,450 + +0.4 2,258,506 - +0.8 2,258,588 + +0.6 2,258,653 - MPMX20_02165 0.15 +0.4 2,258,849 + MPMX20_02165 0.36 +0.4 2,258,873 + MPMX20_02165 0.39 -0.2 2,258,905 - MPMX20_02165 0.42 -1.9 2,258,911 + MPMX20_02165 0.43 +0.4 2,258,911 + MPMX20_02165 0.43 -0.1 2,258,992 - MPMX20_02165 0.52 +1.0 2,259,018 + MPMX20_02165 0.54 -0.2 2,259,026 - MPMX20_02165 0.55 +0.5 2,259,140 + MPMX20_02165 0.68 +1.1 2,259,282 - MPMX20_02165 0.83 +0.3 2,259,328 + MPMX20_02165 0.88 +1.3 2,259,377 - +0.7 2,259,426 + +0.3 2,259,526 + -0.8 2,259,544 - -1.9 2,259,569 + -0.9 2,259,569 + -0.9 2,259,587 - -1.2 2,259,737 + MPMX20_02166 0.17 -0.5 2,259,743 + MPMX20_02166 0.18 -1.3 2,259,746 - MPMX20_02166 0.18 -0.7 2,259,746 - MPMX20_02166 0.18 -1.7 2,259,775 - MPMX20_02166 0.21 -0.7 2,259,780 - MPMX20_02166 0.21 -0.4 2,259,845 + MPMX20_02166 0.27 +1.1 2,259,845 + MPMX20_02166 0.27 +1.0 2,259,984 - MPMX20_02166 0.40 +0.7 2,260,018 + MPMX20_02166 0.43 -0.2 2,260,080 - MPMX20_02166 0.48 +0.0 2,260,086 + MPMX20_02166 0.49 +0.7 2,260,143 + MPMX20_02166 0.54 +0.5 2,260,183 + MPMX20_02166 0.58 +0.3 2,260,185 - MPMX20_02166 0.58 -0.0 2,260,206 + MPMX20_02166 0.60 +0.8 2,260,227 - MPMX20_02166 0.61 +0.0 2,260,252 + MPMX20_02166 0.64 -0.5 2,260,283 + MPMX20_02166 0.66 -0.4 2,260,312 + MPMX20_02166 0.69 -0.1 2,260,313 - MPMX20_02166 0.69 -0.4 2,260,358 - MPMX20_02166 0.73 -0.2
Or see this region's nucleotide sequence