Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14235

Experiment: Anaerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH5.5
3,020,127	-		ABCV34_RS14230	0.28	-3.4
3,020,127	-		ABCV34_RS14230	0.28	-3.5
3,020,174	+		ABCV34_RS14230	0.31	-4.2
3,020,174	+		ABCV34_RS14230	0.31	-3.7
3,020,174	+		ABCV34_RS14230	0.31	-4.4
3,020,175	-		ABCV34_RS14230	0.31	-3.0
3,020,180	+		ABCV34_RS14230	0.32	-2.4
3,020,180	+		ABCV34_RS14230	0.32	-2.6
3,020,181	-		ABCV34_RS14230	0.32	-2.9
3,020,181	-		ABCV34_RS14230	0.32	-2.2
3,020,325	+		ABCV34_RS14230	0.43	-2.4
3,020,326	-		ABCV34_RS14230	0.43	-3.1
3,020,349	-		ABCV34_RS14230	0.45	-3.7
3,020,366	+		ABCV34_RS14230	0.46	-3.7
3,020,462	+		ABCV34_RS14230	0.53	-3.3
3,020,462	+		ABCV34_RS14230	0.53	-3.4
3,020,462	+		ABCV34_RS14230	0.53	-2.7
3,020,462	+		ABCV34_RS14230	0.53	-3.6
3,020,462	+		ABCV34_RS14230	0.53	-3.9
3,020,462	+		ABCV34_RS14230	0.53	-3.5
3,020,462	+		ABCV34_RS14230	0.53	-3.7
3,020,462	+		ABCV34_RS14230	0.53	-4.0
3,020,462	+		ABCV34_RS14230	0.53	-3.3
3,020,462	+		ABCV34_RS14230	0.53	-2.8
3,020,463	-		ABCV34_RS14230	0.53	-3.4
3,020,463	-		ABCV34_RS14230	0.53	-2.3
3,020,463	-		ABCV34_RS14230	0.53	-3.5
3,020,463	-		ABCV34_RS14230	0.53	-4.1
3,020,469	-		ABCV34_RS14230	0.54	-3.7
3,020,469	-		ABCV34_RS14230	0.54	-1.4
3,020,529	-		ABCV34_RS14230	0.58	-4.7
3,020,603	-		ABCV34_RS14230	0.64	-3.3
3,020,603	-		ABCV34_RS14230	0.64	-2.1
3,020,603	-		ABCV34_RS14230	0.64	-2.9
3,020,705	+		ABCV34_RS14230	0.71	-4.2
3,020,705	+		ABCV34_RS14230	0.71	-4.3
3,020,705	+		ABCV34_RS14230	0.71	-3.6
3,020,705	+		ABCV34_RS14230	0.71	-3.1
3,020,705	+		ABCV34_RS14230	0.71	-3.3
3,020,705	+		ABCV34_RS14230	0.71	-2.5
3,020,705	+		ABCV34_RS14230	0.71	-2.3
3,020,705	+		ABCV34_RS14230	0.71	-3.4
3,020,706	-		ABCV34_RS14230	0.72	-0.9
3,020,706	-		ABCV34_RS14230	0.72	-2.3
3,020,706	-		ABCV34_RS14230	0.72	-2.5
3,020,706	-		ABCV34_RS14230	0.72	-1.1
3,020,706	-		ABCV34_RS14230	0.72	-3.5
3,020,706	-		ABCV34_RS14230	0.72	-1.7
3,020,760	-		ABCV34_RS14230	0.76	-2.4
3,020,760	-		ABCV34_RS14230	0.76	-0.8
3,021,056	+				-2.4
3,021,056	+				-3.4
3,021,056	+				-3.9
3,021,057	-				-2.9
3,021,057	-				-2.1
3,021,057	-				-2.1
3,021,066	-				-3.5
3,021,066	-				-2.8
3,022,026	+				-0.1
3,022,026	+				-0.3
3,022,026	+				-0.7
3,022,026	+				-0.1
3,022,026	+				-0.6
3,022,027	-				-2.1
3,022,027	-				-1.6
3,022,027	-				-3.0
3,022,027	-				-3.0
3,022,027	-				-2.0
3,022,027	-				-1.5
3,022,027	-				-2.9
3,022,027	-				-3.0
3,022,027	-				-3.6
3,022,027	-				-3.0
3,022,098	+				-2.4
3,022,099	-				-3.5
3,022,099	-				-2.0
3,022,304	-		ABCV34_RS14240	0.27	-1.5
3,022,330	+		ABCV34_RS14240	0.30	-4.4
3,022,330	+		ABCV34_RS14240	0.30	-3.1
3,022,330	+		ABCV34_RS14240	0.30	-2.1
3,022,363	+		ABCV34_RS14240	0.35	-3.7
3,022,363	+		ABCV34_RS14240	0.35	-2.2
3,022,363	+		ABCV34_RS14240	0.35	-3.9
3,022,363	+		ABCV34_RS14240	0.35	-2.4
3,022,363	+		ABCV34_RS14240	0.35	-2.7
3,022,364	-		ABCV34_RS14240	0.35	-2.0
3,022,364	-		ABCV34_RS14240	0.35	-3.1
3,022,364	-		ABCV34_RS14240	0.35	-3.5
3,022,364	-		ABCV34_RS14240	0.35	-2.6
3,022,364	-		ABCV34_RS14240	0.35	-3.8
3,022,364	-		ABCV34_RS14240	0.35	-2.1
3,022,364	-		ABCV34_RS14240	0.35	-3.5
3,022,654	+		ABCV34_RS14240	0.73	-4.3
3,022,654	+		ABCV34_RS14240	0.73	-3.4
3,022,654	+		ABCV34_RS14240	0.73	-2.5
3,022,654	+		ABCV34_RS14240	0.73	-3.6
3,022,654	+		ABCV34_RS14240	0.73	-4.4
3,022,654	+		ABCV34_RS14240	0.73	-2.2
3,022,654	+		ABCV34_RS14240	0.73	-3.9
3,022,655	-		ABCV34_RS14240	0.73	-3.1
3,022,655	-		ABCV34_RS14240	0.73	-3.0
3,022,655	-		ABCV34_RS14240	0.73	-3.9
3,022,655	-		ABCV34_RS14240	0.73	-2.4
3,022,655	-		ABCV34_RS14240	0.73	-4.7
3,022,655	-		ABCV34_RS14240	0.73	-2.7
3,022,655	-		ABCV34_RS14240	0.73	-2.4
3,022,655	-		ABCV34_RS14240	0.73	-3.3
3,022,853	+				-4.2
3,022,853	+				-2.5
3,022,853	+				-3.1
3,022,853	+				-2.4
3,022,853	+				-3.1
3,022,853	+				-2.0
3,022,853	+				-3.7
3,022,853	+				-2.5
3,022,853	+				-3.0
3,022,853	+				-1.5
3,022,853	+				-4.7
3,022,853	+				-1.2
3,022,853	+				-2.6
3,022,854	-				-1.7
3,022,854	-				-3.0
3,022,854	-				-3.4
3,022,854	-				-2.7
3,022,854	-				-3.4
3,022,854	-				-3.5
3,022,854	-				-2.0
3,022,854	-				-2.5
3,022,855	+				-4.5
3,022,855	+				-3.7
3,022,855	+				-4.0
3,022,993	+		ABCV34_RS14245	0.27	-3.4
3,022,993	+		ABCV34_RS14245	0.27	-2.4
3,022,993	+		ABCV34_RS14245	0.27	-2.8
3,022,993	+		ABCV34_RS14245	0.27	-3.0
3,022,993	+		ABCV34_RS14245	0.27	-1.6
3,022,993	+		ABCV34_RS14245	0.27	-3.1
3,022,993	+		ABCV34_RS14245	0.27	-2.9
3,022,993	+		ABCV34_RS14245	0.27	-3.6
3,022,993	+		ABCV34_RS14245	0.27	-2.4
3,022,993	+		ABCV34_RS14245	0.27	-2.8
3,022,994	-		ABCV34_RS14245	0.27	-2.6
3,022,994	-		ABCV34_RS14245	0.27	-1.5
3,022,994	-		ABCV34_RS14245	0.27	-1.9
3,022,994	-		ABCV34_RS14245	0.27	-3.4
3,023,015	+		ABCV34_RS14245	0.32	-1.8
3,023,015	+		ABCV34_RS14245	0.32	-3.4
3,023,016	-		ABCV34_RS14245	0.32	-2.1