Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05305

Experiment: Aerobic, pH7.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aerobic, pH7.5
1,158,379	+		ABCV34_RS05300	0.38	-1.2
1,158,379	+		ABCV34_RS05300	0.38	-2.7
1,158,379	+		ABCV34_RS05300	0.38	-1.5
1,158,379	+		ABCV34_RS05300	0.38	-2.9
1,158,379	+		ABCV34_RS05300	0.38	-2.7
1,158,380	-		ABCV34_RS05300	0.38	-2.7
1,158,380	-		ABCV34_RS05300	0.38	-0.5
1,158,380	-		ABCV34_RS05300	0.38	-3.7
1,158,380	-		ABCV34_RS05300	0.38	-2.0
1,158,380	-		ABCV34_RS05300	0.38	-0.7
1,158,380	-		ABCV34_RS05300	0.38	-2.2
1,158,753	+		ABCV34_RS05300	0.68	-2.2
1,158,753	+		ABCV34_RS05300	0.68	-1.4
1,158,754	-		ABCV34_RS05300	0.68	-3.8
1,158,880	+		ABCV34_RS05300	0.78	-2.8
1,158,880	+		ABCV34_RS05300	0.78	-0.9
1,158,881	-		ABCV34_RS05300	0.78	-1.7
1,159,045	+				-2.8
1,159,116	-				-2.4
1,159,116	-				-2.9
1,159,116	-				-1.8
1,159,183	-				-1.6
1,159,765	-		ABCV34_RS05305	0.25	+0.1
1,159,914	+		ABCV34_RS05305	0.32	-1.9
1,159,914	+		ABCV34_RS05305	0.32	-4.0
1,159,915	-		ABCV34_RS05305	0.32	-2.5
1,159,915	-		ABCV34_RS05305	0.32	-3.7
1,159,915	-		ABCV34_RS05305	0.32	-1.7
1,160,163	-		ABCV34_RS05305	0.42	-3.3
1,160,163	-		ABCV34_RS05305	0.42	+0.7
1,160,515	-		ABCV34_RS05305	0.58	-2.2
1,160,515	-		ABCV34_RS05305	0.58	-3.2
1,160,621	-		ABCV34_RS05305	0.62	-1.9
1,160,621	-		ABCV34_RS05305	0.62	-1.5
1,160,709	+		ABCV34_RS05305	0.66	-0.9
1,160,749	-		ABCV34_RS05305	0.68	-2.2
1,160,970	+		ABCV34_RS05305	0.77	-2.2
1,160,970	+		ABCV34_RS05305	0.77	-1.9
1,160,971	-		ABCV34_RS05305	0.77	-1.7
1,160,971	-		ABCV34_RS05305	0.77	-1.9
1,161,087	+		ABCV34_RS05305	0.82	-2.7
1,161,088	-		ABCV34_RS05305	0.82	-2.7
1,161,088	-		ABCV34_RS05305	0.82	-3.5
1,161,132	+		ABCV34_RS05305	0.84	-1.9
1,161,160	-		ABCV34_RS05305	0.85	-0.6
1,161,160	-		ABCV34_RS05305	0.85	-2.5
1,161,160	-		ABCV34_RS05305	0.85	-0.9
1,161,515	+				-3.0
1,161,546	+				-0.9
1,161,546	+				-1.9
1,161,547	-				-2.3
1,161,547	-				-3.0
1,161,547	-				-1.9
1,161,547	-				-2.7
1,161,547	-				-2.4
1,161,551	+				-1.0
1,161,551	+				-1.9
1,161,551	+				-2.6
1,161,551	+				-3.6
1,161,551	+				-1.3
1,161,551	+				-2.7
1,161,551	+				-1.5
1,161,551	+				-1.5
1,161,552	-				-2.5
1,161,552	-				-3.9
1,161,552	-				-2.3
1,161,552	-				-2.8
1,161,557	+				-3.0
1,161,558	-				-1.8
1,161,558	-				-2.5
1,161,588	+				-2.8
1,161,588	+				-2.2
1,161,765	+		ABCV34_RS05310	0.32	-2.7
1,161,765	+		ABCV34_RS05310	0.32	-2.5
1,161,765	+		ABCV34_RS05310	0.32	-2.7
1,161,766	-		ABCV34_RS05310	0.32	-1.8
1,161,766	-		ABCV34_RS05310	0.32	-2.8
1,161,766	-		ABCV34_RS05310	0.32	-2.8
1,161,766	-		ABCV34_RS05310	0.32	-2.1
1,161,766	-		ABCV34_RS05310	0.32	-1.5
1,161,766	-		ABCV34_RS05310	0.32	-3.5
1,161,766	-		ABCV34_RS05310	0.32	-1.2
1,161,766	-		ABCV34_RS05310	0.32	-3.0
1,161,766	-		ABCV34_RS05310	0.32	-4.3
1,161,797	+		ABCV34_RS05310	0.42	-3.7
1,161,797	+		ABCV34_RS05310	0.42	-2.9
1,161,797	+		ABCV34_RS05310	0.42	-1.6
1,161,798	-		ABCV34_RS05310	0.42	-0.1
1,161,798	-		ABCV34_RS05310	0.42	-2.1
1,161,798	-		ABCV34_RS05310	0.42	-3.4
1,161,798	-		ABCV34_RS05310	0.42	-2.2
1,161,882	+		ABCV34_RS05310	0.68	-2.0
1,161,882	+		ABCV34_RS05310	0.68	-3.2
1,161,882	+		ABCV34_RS05310	0.68	-1.9
1,161,883	-		ABCV34_RS05310	0.68	-3.0
1,161,883	-		ABCV34_RS05310	0.68	-2.2
1,161,883	-		ABCV34_RS05310	0.68	-2.1
1,161,883	-		ABCV34_RS05310	0.68	-2.5
1,161,883	-		ABCV34_RS05310	0.68	-3.3
1,161,883	-		ABCV34_RS05310	0.68	-2.4
1,161,909	+		ABCV34_RS05310	0.76	-2.9
1,161,909	+		ABCV34_RS05310	0.76	-2.0
1,161,909	+		ABCV34_RS05310	0.76	-3.8
1,161,909	+		ABCV34_RS05310	0.76	-1.5
1,161,909	+		ABCV34_RS05310	0.76	-2.1
1,161,909	+		ABCV34_RS05310	0.76	-1.3
1,161,909	+		ABCV34_RS05310	0.76	-1.6
1,161,910	-		ABCV34_RS05310	0.77	-1.8
1,161,910	-		ABCV34_RS05310	0.77	-1.9
1,161,910	-		ABCV34_RS05310	0.77	-2.0
1,161,910	-		ABCV34_RS05310	0.77	-1.4
1,161,910	-		ABCV34_RS05310	0.77	-1.7
1,161,910	-		ABCV34_RS05310	0.77	-1.1
1,161,943	+		ABCV34_RS05310	0.87	-2.0
1,161,992	+				-2.4
1,161,992	+				-1.3
1,161,992	+				-1.5
1,161,992	+				-0.7
1,161,992	+				-2.0
1,161,992	+				-2.5
1,161,993	-				-2.1
1,161,993	-				-2.1
1,161,999	+				-1.4
1,161,999	+				-2.2
1,161,999	+				-0.9
1,162,011	+				-2.5
1,162,011	+				-1.0
1,162,011	+				-2.5
1,162,012	-				-2.8
1,162,012	-				-2.9
1,162,012	-				-2.7
1,162,097	+				-3.7
1,162,097	+				-1.8
1,162,097	+				-2.0
1,162,097	+				-1.8
1,162,098	-				-2.4
1,162,098	-				-0.7
1,162,208	+		ABCV34_RS05315	0.37	-1.7
1,162,208	+		ABCV34_RS05315	0.37	-2.9
1,162,208	+		ABCV34_RS05315	0.37	-2.0
1,162,343	+				-1.9
1,162,343	+				-2.9
1,162,343	+				-2.3
1,162,343	+				-2.0
1,162,344	-				-1.5
1,162,344	-				-3.4
1,162,346	+				-2.9
1,162,346	+				-2.3
1,162,346	+				-1.5
1,162,346	+				-1.2
1,162,346	+				-4.7
1,162,346	+				-2.4
1,162,347	-				-2.1
1,162,372	+				-1.5
1,162,372	+				-2.0
1,162,372	+				-1.4
1,162,372	+				-3.3
1,162,372	+				-2.1
1,162,372	+				-1.5
1,162,372	+				+0.4
1,162,372	+				-2.1
1,162,372	+				-2.2
1,162,372	+				-2.8
1,162,372	+				-3.2
1,162,372	+				-1.8
1,162,372	+				-2.3
1,162,372	+				-2.0
1,162,372	+				-1.1
1,162,372	+				-2.8
1,162,372	+				-1.8
1,162,372	+				-1.8
1,162,373	-				-1.8
1,162,373	-				-3.1
1,162,373	-				-3.9
1,162,373	-				-3.1
1,162,373	-				-1.9
1,162,373	-				-2.3
1,162,373	-				-0.9
1,162,373	-				-1.0
1,162,373	-				-3.0
1,162,373	-				-2.1
1,162,373	-				-2.5
1,162,373	-				-1.7
1,162,373	-				-1.5
1,162,373	-				-1.6
1,162,373	-				-0.9
1,162,373	-				-2.5
1,162,373	-				-2.8
1,162,382	-				-2.0
1,162,382	-				-2.2
1,162,382	-				-2.9
1,162,382	-				-4.6