Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04584 and MPMX20_04585 are separated by 122 nucleotides MPMX20_04585 and MPMX20_04586 are separated by 34 nucleotides MPMX20_04586 and MPMX20_04587 are separated by 155 nucleotides
MPMX20_04584: MPMX20_04584 - Alpha-D-glucose 1-phosphate phosphatase YihX, at 4,795,549 to 4,796,148
_04584
MPMX20_04585: MPMX20_04585 - HTH-type transcriptional repressor CsqR, at 4,796,271 to 4,797,071
_04585
MPMX20_04586: MPMX20_04586 - Sulfofructose kinase, at 4,797,106 to 4,798,002
_04586
MPMX20_04587: MPMX20_04587 - 3-sulfolactaldehyde reductase, at 4,798,158 to 4,799,048
_04587
Position (kb)
4797
4798
4799 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4796.201 kb on - strand at 4796.214 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.276 kb on - strand at 4796.276 kb on - strand at 4796.319 kb on - strand at 4796.350 kb on + strand at 4796.350 kb on + strand at 4796.498 kb on - strand, within MPMX20_04585 at 4796.498 kb on - strand, within MPMX20_04585 at 4796.503 kb on - strand, within MPMX20_04585 at 4796.509 kb on - strand, within MPMX20_04585 at 4796.556 kb on - strand, within MPMX20_04585 at 4796.614 kb on - strand, within MPMX20_04585 at 4796.635 kb on - strand, within MPMX20_04585 at 4796.702 kb on - strand, within MPMX20_04585 at 4796.706 kb on + strand, within MPMX20_04585 at 4796.860 kb on - strand, within MPMX20_04585 at 4796.881 kb on + strand, within MPMX20_04585 at 4796.917 kb on - strand, within MPMX20_04585 at 4796.957 kb on + strand, within MPMX20_04585 at 4796.975 kb on - strand, within MPMX20_04585 at 4797.026 kb on + strand at 4797.064 kb on - strand at 4797.067 kb on + strand at 4797.069 kb on + strand at 4797.075 kb on - strand at 4797.133 kb on + strand at 4797.133 kb on + strand at 4797.210 kb on - strand, within MPMX20_04586 at 4797.235 kb on - strand, within MPMX20_04586 at 4797.369 kb on - strand, within MPMX20_04586 at 4797.443 kb on - strand, within MPMX20_04586 at 4797.460 kb on + strand, within MPMX20_04586 at 4797.485 kb on - strand, within MPMX20_04586 at 4797.524 kb on - strand, within MPMX20_04586 at 4797.529 kb on - strand, within MPMX20_04586 at 4797.578 kb on - strand, within MPMX20_04586 at 4797.632 kb on + strand, within MPMX20_04586 at 4797.641 kb on - strand, within MPMX20_04586 at 4797.701 kb on - strand, within MPMX20_04586 at 4797.711 kb on + strand, within MPMX20_04586 at 4797.737 kb on + strand, within MPMX20_04586 at 4797.778 kb on + strand, within MPMX20_04586 at 4797.803 kb on - strand, within MPMX20_04586 at 4797.897 kb on + strand, within MPMX20_04586 at 4797.972 kb on + strand at 4798.180 kb on + strand at 4798.180 kb on + strand at 4798.180 kb on + strand at 4798.185 kb on + strand at 4798.188 kb on - strand at 4798.188 kb on - strand at 4798.236 kb on - strand at 4798.289 kb on + strand, within MPMX20_04587 at 4798.306 kb on + strand, within MPMX20_04587 at 4798.314 kb on - strand, within MPMX20_04587 at 4798.318 kb on + strand, within MPMX20_04587 at 4798.318 kb on + strand, within MPMX20_04587 at 4798.326 kb on - strand, within MPMX20_04587 at 4798.326 kb on - strand, within MPMX20_04587 at 4798.377 kb on + strand, within MPMX20_04587 at 4798.407 kb on + strand, within MPMX20_04587 at 4798.407 kb on + strand, within MPMX20_04587 at 4798.415 kb on - strand, within MPMX20_04587 at 4798.444 kb on + strand, within MPMX20_04587 at 4798.455 kb on + strand, within MPMX20_04587 at 4798.528 kb on + strand, within MPMX20_04587 at 4798.536 kb on - strand, within MPMX20_04587 at 4798.559 kb on - strand, within MPMX20_04587 at 4798.560 kb on - strand, within MPMX20_04587 at 4798.639 kb on - strand, within MPMX20_04587 at 4798.671 kb on - strand, within MPMX20_04587 at 4798.738 kb on - strand, within MPMX20_04587 at 4798.764 kb on - strand, within MPMX20_04587 at 4798.810 kb on + strand, within MPMX20_04587 at 4798.810 kb on + strand, within MPMX20_04587 at 4798.848 kb on - strand, within MPMX20_04587 at 4798.886 kb on - strand, within MPMX20_04587 at 4798.908 kb on - strand, within MPMX20_04587 at 4798.958 kb on - strand, within MPMX20_04587
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB remove 4,796,201 - +2.0 4,796,214 + -0.5 4,796,268 + -1.1 4,796,268 + +0.8 4,796,268 + -2.7 4,796,268 + -0.5 4,796,268 + -0.5 4,796,268 + -2.1 4,796,276 - +0.3 4,796,276 - +0.9 4,796,319 - -0.5 4,796,350 + -0.2 4,796,350 + +0.8 4,796,498 - MPMX20_04585 0.28 -0.1 4,796,498 - MPMX20_04585 0.28 +1.8 4,796,503 - MPMX20_04585 0.29 -0.4 4,796,509 - MPMX20_04585 0.30 -0.9 4,796,556 - MPMX20_04585 0.36 -0.1 4,796,614 - MPMX20_04585 0.43 +2.4 4,796,635 - MPMX20_04585 0.45 -1.6 4,796,702 - MPMX20_04585 0.54 +0.7 4,796,706 + MPMX20_04585 0.54 +0.2 4,796,860 - MPMX20_04585 0.74 -0.8 4,796,881 + MPMX20_04585 0.76 -1.6 4,796,917 - MPMX20_04585 0.81 -0.3 4,796,957 + MPMX20_04585 0.86 -0.4 4,796,975 - MPMX20_04585 0.88 +1.4 4,797,026 + +2.8 4,797,064 - -1.0 4,797,067 + -0.3 4,797,069 + +0.3 4,797,075 - -0.7 4,797,133 + -0.2 4,797,133 + -0.1 4,797,210 - MPMX20_04586 0.12 +0.5 4,797,235 - MPMX20_04586 0.14 +0.8 4,797,369 - MPMX20_04586 0.29 +0.6 4,797,443 - MPMX20_04586 0.38 +0.2 4,797,460 + MPMX20_04586 0.39 +0.8 4,797,485 - MPMX20_04586 0.42 -0.1 4,797,524 - MPMX20_04586 0.47 +0.1 4,797,529 - MPMX20_04586 0.47 -1.0 4,797,578 - MPMX20_04586 0.53 -0.3 4,797,632 + MPMX20_04586 0.59 -1.5 4,797,641 - MPMX20_04586 0.60 +1.6 4,797,701 - MPMX20_04586 0.66 -0.1 4,797,711 + MPMX20_04586 0.67 -0.4 4,797,737 + MPMX20_04586 0.70 +0.5 4,797,778 + MPMX20_04586 0.75 +0.1 4,797,803 - MPMX20_04586 0.78 +2.3 4,797,897 + MPMX20_04586 0.88 +0.9 4,797,972 + -0.6 4,798,180 + +0.2 4,798,180 + -0.7 4,798,180 + -0.3 4,798,185 + +0.4 4,798,188 - -0.1 4,798,188 - +0.3 4,798,236 - -0.1 4,798,289 + MPMX20_04587 0.15 -0.6 4,798,306 + MPMX20_04587 0.17 -0.6 4,798,314 - MPMX20_04587 0.18 +3.4 4,798,318 + MPMX20_04587 0.18 -0.2 4,798,318 + MPMX20_04587 0.18 -0.2 4,798,326 - MPMX20_04587 0.19 -0.0 4,798,326 - MPMX20_04587 0.19 -0.1 4,798,377 + MPMX20_04587 0.25 -0.0 4,798,407 + MPMX20_04587 0.28 -0.6 4,798,407 + MPMX20_04587 0.28 -0.3 4,798,415 - MPMX20_04587 0.29 +0.3 4,798,444 + MPMX20_04587 0.32 +0.8 4,798,455 + MPMX20_04587 0.33 -1.3 4,798,528 + MPMX20_04587 0.42 -0.8 4,798,536 - MPMX20_04587 0.42 +1.2 4,798,559 - MPMX20_04587 0.45 +0.6 4,798,560 - MPMX20_04587 0.45 -0.1 4,798,639 - MPMX20_04587 0.54 -1.0 4,798,671 - MPMX20_04587 0.58 +0.4 4,798,738 - MPMX20_04587 0.65 +1.4 4,798,764 - MPMX20_04587 0.68 +4.1 4,798,810 + MPMX20_04587 0.73 -0.1 4,798,810 + MPMX20_04587 0.73 -2.6 4,798,848 - MPMX20_04587 0.77 +1.8 4,798,886 - MPMX20_04587 0.82 -2.0 4,798,908 - MPMX20_04587 0.84 -0.4 4,798,958 - MPMX20_04587 0.90 +0.3
Or see this region's nucleotide sequence