Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04586

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04584 and MPMX20_04585 are separated by 122 nucleotidesMPMX20_04585 and MPMX20_04586 are separated by 34 nucleotidesMPMX20_04586 and MPMX20_04587 are separated by 155 nucleotides MPMX20_04584: MPMX20_04584 - Alpha-D-glucose 1-phosphate phosphatase YihX, at 4,795,549 to 4,796,148 _04584 MPMX20_04585: MPMX20_04585 - HTH-type transcriptional repressor CsqR, at 4,796,271 to 4,797,071 _04585 MPMX20_04586: MPMX20_04586 - Sulfofructose kinase, at 4,797,106 to 4,798,002 _04586 MPMX20_04587: MPMX20_04587 - 3-sulfolactaldehyde reductase, at 4,798,158 to 4,799,048 _04587 Position (kb) 4797 4798 4799Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4796.201 kb on - strandat 4796.214 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.276 kb on - strandat 4796.276 kb on - strandat 4796.319 kb on - strandat 4796.350 kb on + strandat 4796.350 kb on + strandat 4796.498 kb on - strand, within MPMX20_04585at 4796.498 kb on - strand, within MPMX20_04585at 4796.503 kb on - strand, within MPMX20_04585at 4796.509 kb on - strand, within MPMX20_04585at 4796.556 kb on - strand, within MPMX20_04585at 4796.614 kb on - strand, within MPMX20_04585at 4796.635 kb on - strand, within MPMX20_04585at 4796.702 kb on - strand, within MPMX20_04585at 4796.706 kb on + strand, within MPMX20_04585at 4796.860 kb on - strand, within MPMX20_04585at 4796.881 kb on + strand, within MPMX20_04585at 4796.917 kb on - strand, within MPMX20_04585at 4796.957 kb on + strand, within MPMX20_04585at 4796.975 kb on - strand, within MPMX20_04585at 4797.026 kb on + strandat 4797.064 kb on - strandat 4797.067 kb on + strandat 4797.069 kb on + strandat 4797.075 kb on - strandat 4797.133 kb on + strandat 4797.133 kb on + strandat 4797.210 kb on - strand, within MPMX20_04586at 4797.235 kb on - strand, within MPMX20_04586at 4797.369 kb on - strand, within MPMX20_04586at 4797.443 kb on - strand, within MPMX20_04586at 4797.460 kb on + strand, within MPMX20_04586at 4797.485 kb on - strand, within MPMX20_04586at 4797.524 kb on - strand, within MPMX20_04586at 4797.529 kb on - strand, within MPMX20_04586at 4797.578 kb on - strand, within MPMX20_04586at 4797.632 kb on + strand, within MPMX20_04586at 4797.641 kb on - strand, within MPMX20_04586at 4797.701 kb on - strand, within MPMX20_04586at 4797.711 kb on + strand, within MPMX20_04586at 4797.737 kb on + strand, within MPMX20_04586at 4797.778 kb on + strand, within MPMX20_04586at 4797.803 kb on - strand, within MPMX20_04586at 4797.897 kb on + strand, within MPMX20_04586at 4797.972 kb on + strandat 4798.180 kb on + strandat 4798.180 kb on + strandat 4798.180 kb on + strandat 4798.185 kb on + strandat 4798.188 kb on - strandat 4798.188 kb on - strandat 4798.236 kb on - strandat 4798.289 kb on + strand, within MPMX20_04587at 4798.306 kb on + strand, within MPMX20_04587at 4798.314 kb on - strand, within MPMX20_04587at 4798.318 kb on + strand, within MPMX20_04587at 4798.318 kb on + strand, within MPMX20_04587at 4798.326 kb on - strand, within MPMX20_04587at 4798.326 kb on - strand, within MPMX20_04587at 4798.377 kb on + strand, within MPMX20_04587at 4798.407 kb on + strand, within MPMX20_04587at 4798.407 kb on + strand, within MPMX20_04587at 4798.415 kb on - strand, within MPMX20_04587at 4798.444 kb on + strand, within MPMX20_04587at 4798.455 kb on + strand, within MPMX20_04587at 4798.528 kb on + strand, within MPMX20_04587at 4798.536 kb on - strand, within MPMX20_04587at 4798.559 kb on - strand, within MPMX20_04587at 4798.560 kb on - strand, within MPMX20_04587at 4798.639 kb on - strand, within MPMX20_04587at 4798.671 kb on - strand, within MPMX20_04587at 4798.738 kb on - strand, within MPMX20_04587at 4798.764 kb on - strand, within MPMX20_04587at 4798.810 kb on + strand, within MPMX20_04587at 4798.810 kb on + strand, within MPMX20_04587at 4798.848 kb on - strand, within MPMX20_04587at 4798.886 kb on - strand, within MPMX20_04587at 4798.908 kb on - strand, within MPMX20_04587at 4798.958 kb on - strand, within MPMX20_04587

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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4,796,201 - +2.0
4,796,214 + -0.5
4,796,268 + -1.1
4,796,268 + +0.8
4,796,268 + -2.7
4,796,268 + -0.5
4,796,268 + -0.5
4,796,268 + -2.1
4,796,276 - +0.3
4,796,276 - +0.9
4,796,319 - -0.5
4,796,350 + -0.2
4,796,350 + +0.8
4,796,498 - MPMX20_04585 0.28 -0.1
4,796,498 - MPMX20_04585 0.28 +1.8
4,796,503 - MPMX20_04585 0.29 -0.4
4,796,509 - MPMX20_04585 0.30 -0.9
4,796,556 - MPMX20_04585 0.36 -0.1
4,796,614 - MPMX20_04585 0.43 +2.4
4,796,635 - MPMX20_04585 0.45 -1.6
4,796,702 - MPMX20_04585 0.54 +0.7
4,796,706 + MPMX20_04585 0.54 +0.2
4,796,860 - MPMX20_04585 0.74 -0.8
4,796,881 + MPMX20_04585 0.76 -1.6
4,796,917 - MPMX20_04585 0.81 -0.3
4,796,957 + MPMX20_04585 0.86 -0.4
4,796,975 - MPMX20_04585 0.88 +1.4
4,797,026 + +2.8
4,797,064 - -1.0
4,797,067 + -0.3
4,797,069 + +0.3
4,797,075 - -0.7
4,797,133 + -0.2
4,797,133 + -0.1
4,797,210 - MPMX20_04586 0.12 +0.5
4,797,235 - MPMX20_04586 0.14 +0.8
4,797,369 - MPMX20_04586 0.29 +0.6
4,797,443 - MPMX20_04586 0.38 +0.2
4,797,460 + MPMX20_04586 0.39 +0.8
4,797,485 - MPMX20_04586 0.42 -0.1
4,797,524 - MPMX20_04586 0.47 +0.1
4,797,529 - MPMX20_04586 0.47 -1.0
4,797,578 - MPMX20_04586 0.53 -0.3
4,797,632 + MPMX20_04586 0.59 -1.5
4,797,641 - MPMX20_04586 0.60 +1.6
4,797,701 - MPMX20_04586 0.66 -0.1
4,797,711 + MPMX20_04586 0.67 -0.4
4,797,737 + MPMX20_04586 0.70 +0.5
4,797,778 + MPMX20_04586 0.75 +0.1
4,797,803 - MPMX20_04586 0.78 +2.3
4,797,897 + MPMX20_04586 0.88 +0.9
4,797,972 + -0.6
4,798,180 + +0.2
4,798,180 + -0.7
4,798,180 + -0.3
4,798,185 + +0.4
4,798,188 - -0.1
4,798,188 - +0.3
4,798,236 - -0.1
4,798,289 + MPMX20_04587 0.15 -0.6
4,798,306 + MPMX20_04587 0.17 -0.6
4,798,314 - MPMX20_04587 0.18 +3.4
4,798,318 + MPMX20_04587 0.18 -0.2
4,798,318 + MPMX20_04587 0.18 -0.2
4,798,326 - MPMX20_04587 0.19 -0.0
4,798,326 - MPMX20_04587 0.19 -0.1
4,798,377 + MPMX20_04587 0.25 -0.0
4,798,407 + MPMX20_04587 0.28 -0.6
4,798,407 + MPMX20_04587 0.28 -0.3
4,798,415 - MPMX20_04587 0.29 +0.3
4,798,444 + MPMX20_04587 0.32 +0.8
4,798,455 + MPMX20_04587 0.33 -1.3
4,798,528 + MPMX20_04587 0.42 -0.8
4,798,536 - MPMX20_04587 0.42 +1.2
4,798,559 - MPMX20_04587 0.45 +0.6
4,798,560 - MPMX20_04587 0.45 -0.1
4,798,639 - MPMX20_04587 0.54 -1.0
4,798,671 - MPMX20_04587 0.58 +0.4
4,798,738 - MPMX20_04587 0.65 +1.4
4,798,764 - MPMX20_04587 0.68 +4.1
4,798,810 + MPMX20_04587 0.73 -0.1
4,798,810 + MPMX20_04587 0.73 -2.6
4,798,848 - MPMX20_04587 0.77 +1.8
4,798,886 - MPMX20_04587 0.82 -2.0
4,798,908 - MPMX20_04587 0.84 -0.4
4,798,958 - MPMX20_04587 0.90 +0.3

Or see this region's nucleotide sequence