Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03661

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03659 and MPMX20_03660 are separated by 371 nucleotidesMPMX20_03660 and MPMX20_03661 are separated by 15 nucleotidesMPMX20_03661 and MPMX20_03662 overlap by 4 nucleotidesMPMX20_03662 and MPMX20_03663 are separated by 630 nucleotides MPMX20_03659: MPMX20_03659 - putative glucarate transporter, at 3,853,671 to 3,855,026 _03659 MPMX20_03660: MPMX20_03660 - hypothetical protein, at 3,855,398 to 3,855,847 _03660 MPMX20_03661: MPMX20_03661 - tRNA pseudouridine synthase C, at 3,855,863 to 3,856,648 _03661 MPMX20_03662: MPMX20_03662 - putative protein YqcC, at 3,856,645 to 3,856,974 _03662 MPMX20_03663: MPMX20_03663 - Protein Syd, at 3,857,605 to 3,858,150 _03663 Position (kb) 3855 3856 3857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3854.867 kb on + strand, within MPMX20_03659at 3854.875 kb on - strand, within MPMX20_03659at 3854.912 kb on + strandat 3854.944 kb on + strandat 3854.965 kb on + strandat 3854.968 kb on - strandat 3854.968 kb on - strandat 3854.968 kb on - strandat 3854.968 kb on - strandat 3854.973 kb on - strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.998 kb on - strandat 3854.998 kb on - strandat 3854.998 kb on - strandat 3854.998 kb on - strandat 3855.011 kb on + strandat 3855.026 kb on + strandat 3855.044 kb on - strandat 3855.049 kb on - strandat 3855.061 kb on + strandat 3855.064 kb on - strandat 3855.066 kb on + strandat 3855.074 kb on - strandat 3855.122 kb on + strandat 3855.132 kb on + strandat 3855.140 kb on - strandat 3855.181 kb on - strandat 3855.189 kb on + strandat 3855.194 kb on + strandat 3855.194 kb on + strandat 3855.202 kb on - strandat 3855.202 kb on - strandat 3855.225 kb on - strandat 3855.254 kb on + strandat 3855.262 kb on - strandat 3855.262 kb on - strandat 3855.262 kb on - strandat 3855.262 kb on - strandat 3855.272 kb on - strandat 3855.409 kb on + strandat 3855.409 kb on + strandat 3855.409 kb on + strandat 3855.419 kb on + strandat 3855.419 kb on + strandat 3855.419 kb on + strandat 3855.427 kb on - strandat 3855.429 kb on - strandat 3855.452 kb on - strand, within MPMX20_03660at 3855.466 kb on - strand, within MPMX20_03660at 3855.564 kb on + strand, within MPMX20_03660at 3855.598 kb on - strand, within MPMX20_03660at 3855.703 kb on - strand, within MPMX20_03660at 3855.758 kb on + strand, within MPMX20_03660at 3855.758 kb on + strand, within MPMX20_03660at 3855.766 kb on - strand, within MPMX20_03660at 3855.786 kb on - strand, within MPMX20_03660at 3855.809 kb on + strandat 3855.809 kb on + strandat 3855.844 kb on - strandat 3855.846 kb on - strandat 3855.882 kb on + strandat 3855.974 kb on + strand, within MPMX20_03661at 3855.982 kb on - strand, within MPMX20_03661at 3856.162 kb on - strand, within MPMX20_03661at 3856.409 kb on - strand, within MPMX20_03661at 3856.411 kb on + strand, within MPMX20_03661at 3856.419 kb on - strand, within MPMX20_03661at 3856.462 kb on + strand, within MPMX20_03661at 3856.468 kb on + strand, within MPMX20_03661at 3856.533 kb on + strand, within MPMX20_03661at 3856.616 kb on + strandat 3856.712 kb on + strand, within MPMX20_03662at 3856.722 kb on + strand, within MPMX20_03662at 3856.781 kb on + strand, within MPMX20_03662at 3856.783 kb on + strand, within MPMX20_03662at 3856.806 kb on + strand, within MPMX20_03662at 3856.844 kb on - strand, within MPMX20_03662at 3856.849 kb on - strand, within MPMX20_03662at 3856.945 kb on - strandat 3856.981 kb on - strandat 3857.006 kb on + strandat 3857.008 kb on + strandat 3857.008 kb on + strandat 3857.008 kb on + strandat 3857.014 kb on - strandat 3857.016 kb on - strandat 3857.139 kb on + strandat 3857.157 kb on - strandat 3857.178 kb on + strandat 3857.233 kb on + strandat 3857.270 kb on + strandat 3857.334 kb on - strandat 3857.415 kb on - strandat 3857.473 kb on - strandat 3857.473 kb on - strandat 3857.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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3,854,867 + MPMX20_03659 0.88 +0.2
3,854,875 - MPMX20_03659 0.89 +0.0
3,854,912 + +2.9
3,854,944 + -0.2
3,854,965 + +0.2
3,854,968 - -0.2
3,854,968 - -0.3
3,854,968 - -0.3
3,854,968 - -0.2
3,854,973 - -0.2
3,854,990 + -0.0
3,854,990 + +0.6
3,854,990 + +0.1
3,854,990 + -0.0
3,854,990 + -0.2
3,854,990 + +0.4
3,854,998 - -0.3
3,854,998 - -0.5
3,854,998 - -0.6
3,854,998 - -0.1
3,855,011 + -0.7
3,855,026 + +0.8
3,855,044 - +0.5
3,855,049 - +1.3
3,855,061 + +0.2
3,855,064 - -0.7
3,855,066 + -0.1
3,855,074 - -0.6
3,855,122 + +0.8
3,855,132 + +0.1
3,855,140 - +0.4
3,855,181 - +0.7
3,855,189 + -0.0
3,855,194 + -1.0
3,855,194 + -0.3
3,855,202 - -0.2
3,855,202 - +0.8
3,855,225 - +0.2
3,855,254 + -0.6
3,855,262 - -0.6
3,855,262 - +0.8
3,855,262 - -0.0
3,855,262 - -0.9
3,855,272 - +0.4
3,855,409 + -0.2
3,855,409 + +0.6
3,855,409 + -0.9
3,855,419 + +0.2
3,855,419 + -0.1
3,855,419 + +0.4
3,855,427 - +0.4
3,855,429 - +0.6
3,855,452 - MPMX20_03660 0.12 -1.4
3,855,466 - MPMX20_03660 0.15 -0.4
3,855,564 + MPMX20_03660 0.37 +1.9
3,855,598 - MPMX20_03660 0.44 -1.9
3,855,703 - MPMX20_03660 0.68 +0.0
3,855,758 + MPMX20_03660 0.80 -0.5
3,855,758 + MPMX20_03660 0.80 -0.8
3,855,766 - MPMX20_03660 0.82 +0.3
3,855,786 - MPMX20_03660 0.86 -0.6
3,855,809 + -0.6
3,855,809 + +0.6
3,855,844 - +0.2
3,855,846 - +0.6
3,855,882 + -0.6
3,855,974 + MPMX20_03661 0.14 +0.2
3,855,982 - MPMX20_03661 0.15 +0.8
3,856,162 - MPMX20_03661 0.38 +0.3
3,856,409 - MPMX20_03661 0.69 +0.4
3,856,411 + MPMX20_03661 0.70 -0.7
3,856,419 - MPMX20_03661 0.71 +1.1
3,856,462 + MPMX20_03661 0.76 -0.2
3,856,468 + MPMX20_03661 0.77 -0.1
3,856,533 + MPMX20_03661 0.85 -0.1
3,856,616 + +1.2
3,856,712 + MPMX20_03662 0.20 -0.7
3,856,722 + MPMX20_03662 0.23 +1.4
3,856,781 + MPMX20_03662 0.41 +0.5
3,856,783 + MPMX20_03662 0.42 +0.2
3,856,806 + MPMX20_03662 0.49 -0.8
3,856,844 - MPMX20_03662 0.60 +0.1
3,856,849 - MPMX20_03662 0.62 +0.3
3,856,945 - +0.3
3,856,981 - -1.0
3,857,006 + +0.1
3,857,008 + +0.9
3,857,008 + -0.3
3,857,008 + -0.6
3,857,014 - +0.1
3,857,016 - -0.5
3,857,139 + +0.1
3,857,157 - -0.1
3,857,178 + +0.9
3,857,233 + -1.2
3,857,270 + +0.3
3,857,334 - -2.5
3,857,415 - +0.5
3,857,473 - +0.4
3,857,473 - -0.2
3,857,564 + -0.0

Or see this region's nucleotide sequence