Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03152

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03150 and MPMX20_03151 are separated by 125 nucleotidesMPMX20_03151 and MPMX20_03152 are separated by 54 nucleotidesMPMX20_03152 and MPMX20_03153 are separated by 134 nucleotidesMPMX20_03153 and MPMX20_03154 are separated by 19 nucleotides MPMX20_03150: MPMX20_03150 - Putative DNA repair helicase RadD, at 3,312,068 to 3,313,828 _03150 MPMX20_03151: MPMX20_03151 - 50S ribosomal protein L25, at 3,313,954 to 3,314,238 _03151 MPMX20_03152: MPMX20_03152 - Nucleoid-associated protein YejK, at 3,314,293 to 3,315,300 _03152 MPMX20_03153: MPMX20_03153 - hypothetical protein, at 3,315,435 to 3,315,662 _03153 MPMX20_03154: MPMX20_03154 - Inner membrane protein YejM, at 3,315,682 to 3,317,442 _03154 Position (kb) 3314 3315 3316Strain fitness (log2 ratio) -2 -1 0 1 2at 3313.400 kb on + strand, within MPMX20_03150at 3313.435 kb on - strand, within MPMX20_03150at 3313.440 kb on - strand, within MPMX20_03150at 3313.458 kb on - strand, within MPMX20_03150at 3313.468 kb on + strand, within MPMX20_03150at 3313.484 kb on + strand, within MPMX20_03150at 3313.489 kb on + strand, within MPMX20_03150at 3313.494 kb on + strand, within MPMX20_03150at 3313.494 kb on + strand, within MPMX20_03150at 3313.494 kb on + strand, within MPMX20_03150at 3313.494 kb on + strand, within MPMX20_03150at 3313.494 kb on + strand, within MPMX20_03150at 3313.494 kb on + strand, within MPMX20_03150at 3313.502 kb on - strand, within MPMX20_03150at 3313.502 kb on - strand, within MPMX20_03150at 3313.502 kb on - strand, within MPMX20_03150at 3313.502 kb on - strand, within MPMX20_03150at 3313.502 kb on - strand, within MPMX20_03150at 3313.569 kb on + strand, within MPMX20_03150at 3313.577 kb on - strand, within MPMX20_03150at 3313.577 kb on - strand, within MPMX20_03150at 3313.595 kb on + strand, within MPMX20_03150at 3313.597 kb on + strand, within MPMX20_03150at 3313.602 kb on + strand, within MPMX20_03150at 3313.602 kb on + strand, within MPMX20_03150at 3313.612 kb on + strand, within MPMX20_03150at 3313.612 kb on + strand, within MPMX20_03150at 3313.620 kb on + strand, within MPMX20_03150at 3313.620 kb on - strand, within MPMX20_03150at 3313.620 kb on - strand, within MPMX20_03150at 3313.620 kb on - strand, within MPMX20_03150at 3313.620 kb on - strand, within MPMX20_03150at 3313.621 kb on - strand, within MPMX20_03150at 3313.650 kb on + strand, within MPMX20_03150at 3313.658 kb on - strandat 3313.658 kb on - strandat 3313.670 kb on - strandat 3313.670 kb on - strandat 3313.677 kb on + strandat 3313.677 kb on + strandat 3313.677 kb on + strandat 3313.677 kb on + strandat 3313.709 kb on + strandat 3313.717 kb on - strandat 3313.764 kb on - strandat 3313.770 kb on + strandat 3314.309 kb on - strandat 3314.348 kb on + strandat 3314.361 kb on + strandat 3314.361 kb on + strandat 3314.364 kb on - strandat 3314.379 kb on - strandat 3314.506 kb on + strand, within MPMX20_03152at 3314.549 kb on - strand, within MPMX20_03152at 3314.618 kb on + strand, within MPMX20_03152at 3314.618 kb on + strand, within MPMX20_03152at 3314.618 kb on + strand, within MPMX20_03152at 3314.618 kb on + strand, within MPMX20_03152at 3314.626 kb on - strand, within MPMX20_03152at 3314.626 kb on - strand, within MPMX20_03152at 3314.626 kb on - strand, within MPMX20_03152at 3314.702 kb on + strand, within MPMX20_03152at 3314.707 kb on + strand, within MPMX20_03152at 3314.769 kb on + strand, within MPMX20_03152at 3314.797 kb on + strand, within MPMX20_03152at 3314.798 kb on + strand, within MPMX20_03152at 3314.901 kb on - strand, within MPMX20_03152at 3314.950 kb on - strand, within MPMX20_03152at 3314.956 kb on + strand, within MPMX20_03152at 3314.999 kb on - strand, within MPMX20_03152at 3315.104 kb on + strand, within MPMX20_03152at 3315.127 kb on + strand, within MPMX20_03152at 3315.133 kb on - strand, within MPMX20_03152at 3315.138 kb on - strand, within MPMX20_03152at 3315.166 kb on - strand, within MPMX20_03152at 3315.166 kb on - strand, within MPMX20_03152at 3315.168 kb on - strand, within MPMX20_03152at 3315.234 kb on + strandat 3315.242 kb on - strandat 3315.242 kb on - strandat 3315.242 kb on - strandat 3315.242 kb on - strandat 3315.249 kb on - strandat 3315.457 kb on + strandat 3315.491 kb on + strand, within MPMX20_03153at 3315.624 kb on + strand, within MPMX20_03153at 3315.624 kb on + strand, within MPMX20_03153at 3315.677 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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3,313,400 + MPMX20_03150 0.76 -1.1
3,313,435 - MPMX20_03150 0.78 +0.7
3,313,440 - MPMX20_03150 0.78 -0.1
3,313,458 - MPMX20_03150 0.79 -2.1
3,313,468 + MPMX20_03150 0.80 -0.9
3,313,484 + MPMX20_03150 0.80 +0.1
3,313,489 + MPMX20_03150 0.81 -0.5
3,313,494 + MPMX20_03150 0.81 -0.8
3,313,494 + MPMX20_03150 0.81 +1.5
3,313,494 + MPMX20_03150 0.81 -0.0
3,313,494 + MPMX20_03150 0.81 -0.2
3,313,494 + MPMX20_03150 0.81 +1.7
3,313,494 + MPMX20_03150 0.81 +0.7
3,313,502 - MPMX20_03150 0.81 +1.3
3,313,502 - MPMX20_03150 0.81 +0.8
3,313,502 - MPMX20_03150 0.81 -0.2
3,313,502 - MPMX20_03150 0.81 +0.0
3,313,502 - MPMX20_03150 0.81 +0.2
3,313,569 + MPMX20_03150 0.85 +0.2
3,313,577 - MPMX20_03150 0.86 -0.4
3,313,577 - MPMX20_03150 0.86 +0.3
3,313,595 + MPMX20_03150 0.87 -0.1
3,313,597 + MPMX20_03150 0.87 -0.9
3,313,602 + MPMX20_03150 0.87 +0.3
3,313,602 + MPMX20_03150 0.87 +1.3
3,313,612 + MPMX20_03150 0.88 -0.2
3,313,612 + MPMX20_03150 0.88 +0.3
3,313,620 + MPMX20_03150 0.88 -1.2
3,313,620 - MPMX20_03150 0.88 -1.3
3,313,620 - MPMX20_03150 0.88 +1.0
3,313,620 - MPMX20_03150 0.88 -0.2
3,313,620 - MPMX20_03150 0.88 -0.6
3,313,621 - MPMX20_03150 0.88 -0.1
3,313,650 + MPMX20_03150 0.90 +0.7
3,313,658 - +0.6
3,313,658 - +1.1
3,313,670 - -0.4
3,313,670 - -0.3
3,313,677 + +0.4
3,313,677 + -1.1
3,313,677 + -0.1
3,313,677 + -0.2
3,313,709 + -0.7
3,313,717 - +0.7
3,313,764 - +0.7
3,313,770 + +0.6
3,314,309 - -0.4
3,314,348 + +0.6
3,314,361 + +0.2
3,314,361 + +1.6
3,314,364 - -0.3
3,314,379 - +0.4
3,314,506 + MPMX20_03152 0.21 +0.3
3,314,549 - MPMX20_03152 0.25 +0.3
3,314,618 + MPMX20_03152 0.32 -0.4
3,314,618 + MPMX20_03152 0.32 -0.4
3,314,618 + MPMX20_03152 0.32 -0.5
3,314,618 + MPMX20_03152 0.32 -0.5
3,314,626 - MPMX20_03152 0.33 +0.2
3,314,626 - MPMX20_03152 0.33 +0.8
3,314,626 - MPMX20_03152 0.33 +0.3
3,314,702 + MPMX20_03152 0.41 -0.5
3,314,707 + MPMX20_03152 0.41 +0.3
3,314,769 + MPMX20_03152 0.47 +1.1
3,314,797 + MPMX20_03152 0.50 -0.1
3,314,798 + MPMX20_03152 0.50 -0.6
3,314,901 - MPMX20_03152 0.60 +0.1
3,314,950 - MPMX20_03152 0.65 +1.8
3,314,956 + MPMX20_03152 0.66 +1.9
3,314,999 - MPMX20_03152 0.70 +1.4
3,315,104 + MPMX20_03152 0.80 +0.8
3,315,127 + MPMX20_03152 0.83 -0.1
3,315,133 - MPMX20_03152 0.83 -1.7
3,315,138 - MPMX20_03152 0.84 -1.2
3,315,166 - MPMX20_03152 0.87 +0.8
3,315,166 - MPMX20_03152 0.87 +0.3
3,315,168 - MPMX20_03152 0.87 +0.4
3,315,234 + +0.6
3,315,242 - -0.7
3,315,242 - +0.2
3,315,242 - +0.9
3,315,242 - -0.0
3,315,249 - +0.1
3,315,457 + +1.9
3,315,491 + MPMX20_03153 0.25 -0.4
3,315,624 + MPMX20_03153 0.83 -0.4
3,315,624 + MPMX20_03153 0.83 -0.5
3,315,677 + +0.1

Or see this region's nucleotide sequence