Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03150 and MPMX20_03151 are separated by 125 nucleotides MPMX20_03151 and MPMX20_03152 are separated by 54 nucleotides MPMX20_03152 and MPMX20_03153 are separated by 134 nucleotides MPMX20_03153 and MPMX20_03154 are separated by 19 nucleotides
MPMX20_03150: MPMX20_03150 - Putative DNA repair helicase RadD, at 3,312,068 to 3,313,828
_03150
MPMX20_03151: MPMX20_03151 - 50S ribosomal protein L25, at 3,313,954 to 3,314,238
_03151
MPMX20_03152: MPMX20_03152 - Nucleoid-associated protein YejK, at 3,314,293 to 3,315,300
_03152
MPMX20_03153: MPMX20_03153 - hypothetical protein, at 3,315,435 to 3,315,662
_03153
MPMX20_03154: MPMX20_03154 - Inner membrane protein YejM, at 3,315,682 to 3,317,442
_03154
Position (kb)
3314
3315
3316 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3313.400 kb on + strand, within MPMX20_03150 at 3313.435 kb on - strand, within MPMX20_03150 at 3313.440 kb on - strand, within MPMX20_03150 at 3313.458 kb on - strand, within MPMX20_03150 at 3313.468 kb on + strand, within MPMX20_03150 at 3313.484 kb on + strand, within MPMX20_03150 at 3313.489 kb on + strand, within MPMX20_03150 at 3313.494 kb on + strand, within MPMX20_03150 at 3313.494 kb on + strand, within MPMX20_03150 at 3313.494 kb on + strand, within MPMX20_03150 at 3313.494 kb on + strand, within MPMX20_03150 at 3313.494 kb on + strand, within MPMX20_03150 at 3313.494 kb on + strand, within MPMX20_03150 at 3313.502 kb on - strand, within MPMX20_03150 at 3313.502 kb on - strand, within MPMX20_03150 at 3313.502 kb on - strand, within MPMX20_03150 at 3313.502 kb on - strand, within MPMX20_03150 at 3313.502 kb on - strand, within MPMX20_03150 at 3313.569 kb on + strand, within MPMX20_03150 at 3313.577 kb on - strand, within MPMX20_03150 at 3313.577 kb on - strand, within MPMX20_03150 at 3313.595 kb on + strand, within MPMX20_03150 at 3313.597 kb on + strand, within MPMX20_03150 at 3313.602 kb on + strand, within MPMX20_03150 at 3313.602 kb on + strand, within MPMX20_03150 at 3313.612 kb on + strand, within MPMX20_03150 at 3313.612 kb on + strand, within MPMX20_03150 at 3313.620 kb on + strand, within MPMX20_03150 at 3313.620 kb on - strand, within MPMX20_03150 at 3313.620 kb on - strand, within MPMX20_03150 at 3313.620 kb on - strand, within MPMX20_03150 at 3313.620 kb on - strand, within MPMX20_03150 at 3313.621 kb on - strand, within MPMX20_03150 at 3313.650 kb on + strand, within MPMX20_03150 at 3313.658 kb on - strand at 3313.658 kb on - strand at 3313.670 kb on - strand at 3313.670 kb on - strand at 3313.677 kb on + strand at 3313.677 kb on + strand at 3313.677 kb on + strand at 3313.677 kb on + strand at 3313.709 kb on + strand at 3313.717 kb on - strand at 3313.764 kb on - strand at 3313.770 kb on + strand at 3314.309 kb on - strand at 3314.348 kb on + strand at 3314.361 kb on + strand at 3314.361 kb on + strand at 3314.364 kb on - strand at 3314.379 kb on - strand at 3314.506 kb on + strand, within MPMX20_03152 at 3314.549 kb on - strand, within MPMX20_03152 at 3314.618 kb on + strand, within MPMX20_03152 at 3314.618 kb on + strand, within MPMX20_03152 at 3314.618 kb on + strand, within MPMX20_03152 at 3314.618 kb on + strand, within MPMX20_03152 at 3314.626 kb on - strand, within MPMX20_03152 at 3314.626 kb on - strand, within MPMX20_03152 at 3314.626 kb on - strand, within MPMX20_03152 at 3314.702 kb on + strand, within MPMX20_03152 at 3314.707 kb on + strand, within MPMX20_03152 at 3314.769 kb on + strand, within MPMX20_03152 at 3314.797 kb on + strand, within MPMX20_03152 at 3314.798 kb on + strand, within MPMX20_03152 at 3314.901 kb on - strand, within MPMX20_03152 at 3314.950 kb on - strand, within MPMX20_03152 at 3314.956 kb on + strand, within MPMX20_03152 at 3314.999 kb on - strand, within MPMX20_03152 at 3315.104 kb on + strand, within MPMX20_03152 at 3315.127 kb on + strand, within MPMX20_03152 at 3315.133 kb on - strand, within MPMX20_03152 at 3315.138 kb on - strand, within MPMX20_03152 at 3315.166 kb on - strand, within MPMX20_03152 at 3315.166 kb on - strand, within MPMX20_03152 at 3315.168 kb on - strand, within MPMX20_03152 at 3315.234 kb on + strand at 3315.242 kb on - strand at 3315.242 kb on - strand at 3315.242 kb on - strand at 3315.242 kb on - strand at 3315.249 kb on - strand at 3315.457 kb on + strand at 3315.491 kb on + strand, within MPMX20_03153 at 3315.624 kb on + strand, within MPMX20_03153 at 3315.624 kb on + strand, within MPMX20_03153 at 3315.677 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB remove 3,313,400 + MPMX20_03150 0.76 -1.1 3,313,435 - MPMX20_03150 0.78 +0.7 3,313,440 - MPMX20_03150 0.78 -0.1 3,313,458 - MPMX20_03150 0.79 -2.1 3,313,468 + MPMX20_03150 0.80 -0.9 3,313,484 + MPMX20_03150 0.80 +0.1 3,313,489 + MPMX20_03150 0.81 -0.5 3,313,494 + MPMX20_03150 0.81 -0.8 3,313,494 + MPMX20_03150 0.81 +1.5 3,313,494 + MPMX20_03150 0.81 -0.0 3,313,494 + MPMX20_03150 0.81 -0.2 3,313,494 + MPMX20_03150 0.81 +1.7 3,313,494 + MPMX20_03150 0.81 +0.7 3,313,502 - MPMX20_03150 0.81 +1.3 3,313,502 - MPMX20_03150 0.81 +0.8 3,313,502 - MPMX20_03150 0.81 -0.2 3,313,502 - MPMX20_03150 0.81 +0.0 3,313,502 - MPMX20_03150 0.81 +0.2 3,313,569 + MPMX20_03150 0.85 +0.2 3,313,577 - MPMX20_03150 0.86 -0.4 3,313,577 - MPMX20_03150 0.86 +0.3 3,313,595 + MPMX20_03150 0.87 -0.1 3,313,597 + MPMX20_03150 0.87 -0.9 3,313,602 + MPMX20_03150 0.87 +0.3 3,313,602 + MPMX20_03150 0.87 +1.3 3,313,612 + MPMX20_03150 0.88 -0.2 3,313,612 + MPMX20_03150 0.88 +0.3 3,313,620 + MPMX20_03150 0.88 -1.2 3,313,620 - MPMX20_03150 0.88 -1.3 3,313,620 - MPMX20_03150 0.88 +1.0 3,313,620 - MPMX20_03150 0.88 -0.2 3,313,620 - MPMX20_03150 0.88 -0.6 3,313,621 - MPMX20_03150 0.88 -0.1 3,313,650 + MPMX20_03150 0.90 +0.7 3,313,658 - +0.6 3,313,658 - +1.1 3,313,670 - -0.4 3,313,670 - -0.3 3,313,677 + +0.4 3,313,677 + -1.1 3,313,677 + -0.1 3,313,677 + -0.2 3,313,709 + -0.7 3,313,717 - +0.7 3,313,764 - +0.7 3,313,770 + +0.6 3,314,309 - -0.4 3,314,348 + +0.6 3,314,361 + +0.2 3,314,361 + +1.6 3,314,364 - -0.3 3,314,379 - +0.4 3,314,506 + MPMX20_03152 0.21 +0.3 3,314,549 - MPMX20_03152 0.25 +0.3 3,314,618 + MPMX20_03152 0.32 -0.4 3,314,618 + MPMX20_03152 0.32 -0.4 3,314,618 + MPMX20_03152 0.32 -0.5 3,314,618 + MPMX20_03152 0.32 -0.5 3,314,626 - MPMX20_03152 0.33 +0.2 3,314,626 - MPMX20_03152 0.33 +0.8 3,314,626 - MPMX20_03152 0.33 +0.3 3,314,702 + MPMX20_03152 0.41 -0.5 3,314,707 + MPMX20_03152 0.41 +0.3 3,314,769 + MPMX20_03152 0.47 +1.1 3,314,797 + MPMX20_03152 0.50 -0.1 3,314,798 + MPMX20_03152 0.50 -0.6 3,314,901 - MPMX20_03152 0.60 +0.1 3,314,950 - MPMX20_03152 0.65 +1.8 3,314,956 + MPMX20_03152 0.66 +1.9 3,314,999 - MPMX20_03152 0.70 +1.4 3,315,104 + MPMX20_03152 0.80 +0.8 3,315,127 + MPMX20_03152 0.83 -0.1 3,315,133 - MPMX20_03152 0.83 -1.7 3,315,138 - MPMX20_03152 0.84 -1.2 3,315,166 - MPMX20_03152 0.87 +0.8 3,315,166 - MPMX20_03152 0.87 +0.3 3,315,168 - MPMX20_03152 0.87 +0.4 3,315,234 + +0.6 3,315,242 - -0.7 3,315,242 - +0.2 3,315,242 - +0.9 3,315,242 - -0.0 3,315,249 - +0.1 3,315,457 + +1.9 3,315,491 + MPMX20_03153 0.25 -0.4 3,315,624 + MPMX20_03153 0.83 -0.4 3,315,624 + MPMX20_03153 0.83 -0.5 3,315,677 + +0.1
Or see this region's nucleotide sequence