Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01952

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01951 and MPMX20_01952 are separated by 121 nucleotidesMPMX20_01952 and MPMX20_01953 are separated by 148 nucleotides MPMX20_01951: MPMX20_01951 - Pyruvate kinase I, at 2,046,485 to 2,047,897 _01951 MPMX20_01952: MPMX20_01952 - hypothetical protein, at 2,048,019 to 2,048,126 _01952 MPMX20_01953: MPMX20_01953 - Cystathionine beta-lyase, at 2,048,275 to 2,049,420 _01953 Position (kb) 2048 2049Strain fitness (log2 ratio) -2 -1 0 1 2at 2047.071 kb on - strand, within MPMX20_01951at 2047.079 kb on - strand, within MPMX20_01951at 2047.100 kb on - strand, within MPMX20_01951at 2047.222 kb on - strand, within MPMX20_01951at 2047.297 kb on - strand, within MPMX20_01951at 2047.308 kb on - strand, within MPMX20_01951at 2047.366 kb on + strand, within MPMX20_01951at 2047.369 kb on - strand, within MPMX20_01951at 2047.420 kb on + strand, within MPMX20_01951at 2047.428 kb on - strand, within MPMX20_01951at 2047.454 kb on + strand, within MPMX20_01951at 2047.498 kb on + strand, within MPMX20_01951at 2047.506 kb on - strand, within MPMX20_01951at 2047.526 kb on - strand, within MPMX20_01951at 2047.564 kb on + strand, within MPMX20_01951at 2047.572 kb on - strand, within MPMX20_01951at 2047.572 kb on - strand, within MPMX20_01951at 2047.615 kb on + strand, within MPMX20_01951at 2047.636 kb on - strand, within MPMX20_01951at 2047.728 kb on + strand, within MPMX20_01951at 2047.910 kb on - strandat 2047.940 kb on + strandat 2047.975 kb on - strandat 2047.985 kb on + strandat 2048.003 kb on + strandat 2048.003 kb on + strandat 2048.011 kb on - strandat 2048.011 kb on - strandat 2048.011 kb on - strandat 2048.074 kb on - strand, within MPMX20_01952at 2048.226 kb on + strandat 2048.227 kb on - strandat 2048.230 kb on + strandat 2048.238 kb on - strandat 2048.239 kb on - strandat 2048.387 kb on - strandat 2048.408 kb on + strand, within MPMX20_01953at 2048.408 kb on + strand, within MPMX20_01953at 2048.416 kb on - strand, within MPMX20_01953at 2048.416 kb on - strand, within MPMX20_01953at 2048.440 kb on + strand, within MPMX20_01953at 2048.448 kb on - strand, within MPMX20_01953at 2048.477 kb on + strand, within MPMX20_01953at 2048.479 kb on + strand, within MPMX20_01953at 2048.484 kb on + strand, within MPMX20_01953at 2048.540 kb on + strand, within MPMX20_01953at 2048.693 kb on - strand, within MPMX20_01953at 2048.700 kb on + strand, within MPMX20_01953at 2048.700 kb on + strand, within MPMX20_01953at 2048.700 kb on + strand, within MPMX20_01953at 2048.732 kb on - strand, within MPMX20_01953at 2048.785 kb on - strand, within MPMX20_01953at 2048.811 kb on + strand, within MPMX20_01953at 2048.845 kb on + strand, within MPMX20_01953at 2048.845 kb on + strand, within MPMX20_01953at 2048.853 kb on - strand, within MPMX20_01953at 2048.853 kb on - strand, within MPMX20_01953at 2048.950 kb on - strand, within MPMX20_01953at 2049.041 kb on - strand, within MPMX20_01953at 2049.067 kb on + strand, within MPMX20_01953at 2049.080 kb on - strand, within MPMX20_01953at 2049.111 kb on + strand, within MPMX20_01953

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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2,047,071 - MPMX20_01951 0.41 -1.1
2,047,079 - MPMX20_01951 0.42 +1.6
2,047,100 - MPMX20_01951 0.44 -0.1
2,047,222 - MPMX20_01951 0.52 -0.2
2,047,297 - MPMX20_01951 0.57 +1.0
2,047,308 - MPMX20_01951 0.58 +1.8
2,047,366 + MPMX20_01951 0.62 +0.3
2,047,369 - MPMX20_01951 0.63 -0.6
2,047,420 + MPMX20_01951 0.66 -2.2
2,047,428 - MPMX20_01951 0.67 +0.5
2,047,454 + MPMX20_01951 0.69 -0.6
2,047,498 + MPMX20_01951 0.72 -0.4
2,047,506 - MPMX20_01951 0.72 -0.4
2,047,526 - MPMX20_01951 0.74 -0.2
2,047,564 + MPMX20_01951 0.76 +0.3
2,047,572 - MPMX20_01951 0.77 -1.3
2,047,572 - MPMX20_01951 0.77 -0.9
2,047,615 + MPMX20_01951 0.80 +0.0
2,047,636 - MPMX20_01951 0.81 -0.5
2,047,728 + MPMX20_01951 0.88 +0.9
2,047,910 - +0.8
2,047,940 + +1.6
2,047,975 - -0.0
2,047,985 + +0.3
2,048,003 + -1.0
2,048,003 + -0.3
2,048,011 - +0.2
2,048,011 - -0.0
2,048,011 - +0.2
2,048,074 - MPMX20_01952 0.51 +0.5
2,048,226 + -0.1
2,048,227 - -0.7
2,048,230 + -0.6
2,048,238 - +1.4
2,048,239 - -0.6
2,048,387 - +0.7
2,048,408 + MPMX20_01953 0.12 +0.3
2,048,408 + MPMX20_01953 0.12 +0.3
2,048,416 - MPMX20_01953 0.12 -0.3
2,048,416 - MPMX20_01953 0.12 +0.2
2,048,440 + MPMX20_01953 0.14 +1.2
2,048,448 - MPMX20_01953 0.15 +0.2
2,048,477 + MPMX20_01953 0.18 -0.2
2,048,479 + MPMX20_01953 0.18 +0.5
2,048,484 + MPMX20_01953 0.18 +0.2
2,048,540 + MPMX20_01953 0.23 -0.5
2,048,693 - MPMX20_01953 0.36 -0.1
2,048,700 + MPMX20_01953 0.37 -0.5
2,048,700 + MPMX20_01953 0.37 -0.7
2,048,700 + MPMX20_01953 0.37 -0.9
2,048,732 - MPMX20_01953 0.40 +0.1
2,048,785 - MPMX20_01953 0.45 +0.4
2,048,811 + MPMX20_01953 0.47 +1.5
2,048,845 + MPMX20_01953 0.50 -0.6
2,048,845 + MPMX20_01953 0.50 -0.7
2,048,853 - MPMX20_01953 0.50 -0.2
2,048,853 - MPMX20_01953 0.50 -0.5
2,048,950 - MPMX20_01953 0.59 +2.1
2,049,041 - MPMX20_01953 0.67 -0.3
2,049,067 + MPMX20_01953 0.69 -0.2
2,049,080 - MPMX20_01953 0.70 -1.0
2,049,111 + MPMX20_01953 0.73 +0.8

Or see this region's nucleotide sequence