Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01951 and MPMX20_01952 are separated by 121 nucleotides MPMX20_01952 and MPMX20_01953 are separated by 148 nucleotides
MPMX20_01951: MPMX20_01951 - Pyruvate kinase I, at 2,046,485 to 2,047,897
_01951
MPMX20_01952: MPMX20_01952 - hypothetical protein, at 2,048,019 to 2,048,126
_01952
MPMX20_01953: MPMX20_01953 - Cystathionine beta-lyase, at 2,048,275 to 2,049,420
_01953
Position (kb)
2048
2049 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2047.071 kb on - strand, within MPMX20_01951 at 2047.079 kb on - strand, within MPMX20_01951 at 2047.100 kb on - strand, within MPMX20_01951 at 2047.222 kb on - strand, within MPMX20_01951 at 2047.297 kb on - strand, within MPMX20_01951 at 2047.308 kb on - strand, within MPMX20_01951 at 2047.366 kb on + strand, within MPMX20_01951 at 2047.369 kb on - strand, within MPMX20_01951 at 2047.420 kb on + strand, within MPMX20_01951 at 2047.428 kb on - strand, within MPMX20_01951 at 2047.454 kb on + strand, within MPMX20_01951 at 2047.498 kb on + strand, within MPMX20_01951 at 2047.506 kb on - strand, within MPMX20_01951 at 2047.526 kb on - strand, within MPMX20_01951 at 2047.564 kb on + strand, within MPMX20_01951 at 2047.572 kb on - strand, within MPMX20_01951 at 2047.572 kb on - strand, within MPMX20_01951 at 2047.615 kb on + strand, within MPMX20_01951 at 2047.636 kb on - strand, within MPMX20_01951 at 2047.728 kb on + strand, within MPMX20_01951 at 2047.910 kb on - strand at 2047.940 kb on + strand at 2047.975 kb on - strand at 2047.985 kb on + strand at 2048.003 kb on + strand at 2048.003 kb on + strand at 2048.011 kb on - strand at 2048.011 kb on - strand at 2048.011 kb on - strand at 2048.074 kb on - strand, within MPMX20_01952 at 2048.226 kb on + strand at 2048.227 kb on - strand at 2048.230 kb on + strand at 2048.238 kb on - strand at 2048.239 kb on - strand at 2048.387 kb on - strand at 2048.408 kb on + strand, within MPMX20_01953 at 2048.408 kb on + strand, within MPMX20_01953 at 2048.416 kb on - strand, within MPMX20_01953 at 2048.416 kb on - strand, within MPMX20_01953 at 2048.440 kb on + strand, within MPMX20_01953 at 2048.448 kb on - strand, within MPMX20_01953 at 2048.477 kb on + strand, within MPMX20_01953 at 2048.479 kb on + strand, within MPMX20_01953 at 2048.484 kb on + strand, within MPMX20_01953 at 2048.540 kb on + strand, within MPMX20_01953 at 2048.693 kb on - strand, within MPMX20_01953 at 2048.700 kb on + strand, within MPMX20_01953 at 2048.700 kb on + strand, within MPMX20_01953 at 2048.700 kb on + strand, within MPMX20_01953 at 2048.732 kb on - strand, within MPMX20_01953 at 2048.785 kb on - strand, within MPMX20_01953 at 2048.811 kb on + strand, within MPMX20_01953 at 2048.845 kb on + strand, within MPMX20_01953 at 2048.845 kb on + strand, within MPMX20_01953 at 2048.853 kb on - strand, within MPMX20_01953 at 2048.853 kb on - strand, within MPMX20_01953 at 2048.950 kb on - strand, within MPMX20_01953 at 2049.041 kb on - strand, within MPMX20_01953 at 2049.067 kb on + strand, within MPMX20_01953 at 2049.080 kb on - strand, within MPMX20_01953 at 2049.111 kb on + strand, within MPMX20_01953
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB remove 2,047,071 - MPMX20_01951 0.41 -1.1 2,047,079 - MPMX20_01951 0.42 +1.6 2,047,100 - MPMX20_01951 0.44 -0.1 2,047,222 - MPMX20_01951 0.52 -0.2 2,047,297 - MPMX20_01951 0.57 +1.0 2,047,308 - MPMX20_01951 0.58 +1.8 2,047,366 + MPMX20_01951 0.62 +0.3 2,047,369 - MPMX20_01951 0.63 -0.6 2,047,420 + MPMX20_01951 0.66 -2.2 2,047,428 - MPMX20_01951 0.67 +0.5 2,047,454 + MPMX20_01951 0.69 -0.6 2,047,498 + MPMX20_01951 0.72 -0.4 2,047,506 - MPMX20_01951 0.72 -0.4 2,047,526 - MPMX20_01951 0.74 -0.2 2,047,564 + MPMX20_01951 0.76 +0.3 2,047,572 - MPMX20_01951 0.77 -1.3 2,047,572 - MPMX20_01951 0.77 -0.9 2,047,615 + MPMX20_01951 0.80 +0.0 2,047,636 - MPMX20_01951 0.81 -0.5 2,047,728 + MPMX20_01951 0.88 +0.9 2,047,910 - +0.8 2,047,940 + +1.6 2,047,975 - -0.0 2,047,985 + +0.3 2,048,003 + -1.0 2,048,003 + -0.3 2,048,011 - +0.2 2,048,011 - -0.0 2,048,011 - +0.2 2,048,074 - MPMX20_01952 0.51 +0.5 2,048,226 + -0.1 2,048,227 - -0.7 2,048,230 + -0.6 2,048,238 - +1.4 2,048,239 - -0.6 2,048,387 - +0.7 2,048,408 + MPMX20_01953 0.12 +0.3 2,048,408 + MPMX20_01953 0.12 +0.3 2,048,416 - MPMX20_01953 0.12 -0.3 2,048,416 - MPMX20_01953 0.12 +0.2 2,048,440 + MPMX20_01953 0.14 +1.2 2,048,448 - MPMX20_01953 0.15 +0.2 2,048,477 + MPMX20_01953 0.18 -0.2 2,048,479 + MPMX20_01953 0.18 +0.5 2,048,484 + MPMX20_01953 0.18 +0.2 2,048,540 + MPMX20_01953 0.23 -0.5 2,048,693 - MPMX20_01953 0.36 -0.1 2,048,700 + MPMX20_01953 0.37 -0.5 2,048,700 + MPMX20_01953 0.37 -0.7 2,048,700 + MPMX20_01953 0.37 -0.9 2,048,732 - MPMX20_01953 0.40 +0.1 2,048,785 - MPMX20_01953 0.45 +0.4 2,048,811 + MPMX20_01953 0.47 +1.5 2,048,845 + MPMX20_01953 0.50 -0.6 2,048,845 + MPMX20_01953 0.50 -0.7 2,048,853 - MPMX20_01953 0.50 -0.2 2,048,853 - MPMX20_01953 0.50 -0.5 2,048,950 - MPMX20_01953 0.59 +2.1 2,049,041 - MPMX20_01953 0.67 -0.3 2,049,067 + MPMX20_01953 0.69 -0.2 2,049,080 - MPMX20_01953 0.70 -1.0 2,049,111 + MPMX20_01953 0.73 +0.8
Or see this region's nucleotide sequence