Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01910 and MPMX20_01911 are separated by 9 nucleotides MPMX20_01911 and MPMX20_01912 are separated by 2 nucleotides MPMX20_01912 and MPMX20_01913 are separated by 140 nucleotides
MPMX20_01910: MPMX20_01910 - Acetyl-CoA acetyltransferase, at 2,001,463 to 2,002,644
_01910
MPMX20_01911: MPMX20_01911 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 2,002,654 to 2,003,310
_01911
MPMX20_01912: MPMX20_01912 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 2,003,313 to 2,004,020
_01912
MPMX20_01913: MPMX20_01913 - HTH-type transcriptional regulator GltC, at 2,004,161 to 2,005,084
_01913
Position (kb)
2002
2003
2004 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2001.654 kb on - strand, within MPMX20_01910 at 2001.705 kb on + strand, within MPMX20_01910 at 2001.731 kb on + strand, within MPMX20_01910 at 2001.731 kb on + strand, within MPMX20_01910 at 2001.736 kb on + strand, within MPMX20_01910 at 2001.739 kb on - strand, within MPMX20_01910 at 2001.744 kb on - strand, within MPMX20_01910 at 2001.744 kb on - strand, within MPMX20_01910 at 2001.744 kb on - strand, within MPMX20_01910 at 2001.794 kb on - strand, within MPMX20_01910 at 2001.870 kb on + strand, within MPMX20_01910 at 2001.894 kb on + strand, within MPMX20_01910 at 2001.934 kb on + strand, within MPMX20_01910 at 2001.934 kb on + strand, within MPMX20_01910 at 2001.942 kb on - strand, within MPMX20_01910 at 2001.963 kb on + strand, within MPMX20_01910 at 2002.006 kb on - strand, within MPMX20_01910 at 2002.029 kb on + strand, within MPMX20_01910 at 2002.029 kb on + strand, within MPMX20_01910 at 2002.225 kb on + strand, within MPMX20_01910 at 2002.233 kb on - strand, within MPMX20_01910 at 2002.254 kb on - strand, within MPMX20_01910 at 2002.275 kb on + strand, within MPMX20_01910 at 2002.275 kb on + strand, within MPMX20_01910 at 2002.297 kb on + strand, within MPMX20_01910 at 2002.379 kb on - strand, within MPMX20_01910 at 2002.384 kb on - strand, within MPMX20_01910 at 2002.429 kb on + strand, within MPMX20_01910 at 2002.506 kb on + strand, within MPMX20_01910 at 2002.516 kb on + strand, within MPMX20_01910 at 2002.610 kb on - strand at 2002.640 kb on + strand at 2002.674 kb on - strand at 2002.854 kb on + strand, within MPMX20_01911 at 2002.908 kb on - strand, within MPMX20_01911 at 2002.989 kb on - strand, within MPMX20_01911 at 2003.019 kb on + strand, within MPMX20_01911 at 2003.027 kb on - strand, within MPMX20_01911 at 2003.050 kb on + strand, within MPMX20_01911 at 2003.050 kb on + strand, within MPMX20_01911 at 2003.139 kb on - strand, within MPMX20_01911 at 2003.158 kb on - strand, within MPMX20_01911 at 2003.190 kb on + strand, within MPMX20_01911 at 2003.295 kb on + strand at 2003.303 kb on - strand at 2003.350 kb on - strand at 2003.383 kb on + strand at 2003.464 kb on - strand, within MPMX20_01912 at 2003.503 kb on + strand, within MPMX20_01912 at 2003.530 kb on - strand, within MPMX20_01912 at 2003.545 kb on + strand, within MPMX20_01912 at 2003.553 kb on - strand, within MPMX20_01912 at 2003.640 kb on + strand, within MPMX20_01912 at 2003.719 kb on - strand, within MPMX20_01912 at 2003.721 kb on + strand, within MPMX20_01912 at 2003.750 kb on - strand, within MPMX20_01912 at 2003.780 kb on + strand, within MPMX20_01912 at 2003.857 kb on + strand, within MPMX20_01912 at 2003.865 kb on - strand, within MPMX20_01912 at 2003.875 kb on - strand, within MPMX20_01912 at 2003.883 kb on - strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.938 kb on - strand, within MPMX20_01912 at 2003.938 kb on - strand, within MPMX20_01912 at 2003.938 kb on - strand, within MPMX20_01912 at 2004.019 kb on - strand at 2004.031 kb on + strand at 2004.039 kb on - strand at 2004.039 kb on - strand at 2004.051 kb on + strand at 2004.059 kb on - strand at 2004.210 kb on - strand at 2004.271 kb on + strand, within MPMX20_01913
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB remove 2,001,654 - MPMX20_01910 0.16 +1.0 2,001,705 + MPMX20_01910 0.20 +0.3 2,001,731 + MPMX20_01910 0.23 -0.1 2,001,731 + MPMX20_01910 0.23 -1.0 2,001,736 + MPMX20_01910 0.23 -0.1 2,001,739 - MPMX20_01910 0.23 +0.4 2,001,744 - MPMX20_01910 0.24 -0.4 2,001,744 - MPMX20_01910 0.24 +0.1 2,001,744 - MPMX20_01910 0.24 +0.0 2,001,794 - MPMX20_01910 0.28 +0.2 2,001,870 + MPMX20_01910 0.34 +1.3 2,001,894 + MPMX20_01910 0.36 -1.6 2,001,934 + MPMX20_01910 0.40 -0.5 2,001,934 + MPMX20_01910 0.40 -1.1 2,001,942 - MPMX20_01910 0.41 -1.0 2,001,963 + MPMX20_01910 0.42 +0.8 2,002,006 - MPMX20_01910 0.46 +3.1 2,002,029 + MPMX20_01910 0.48 -0.6 2,002,029 + MPMX20_01910 0.48 +1.6 2,002,225 + MPMX20_01910 0.64 +0.2 2,002,233 - MPMX20_01910 0.65 +0.1 2,002,254 - MPMX20_01910 0.67 +0.4 2,002,275 + MPMX20_01910 0.69 -0.2 2,002,275 + MPMX20_01910 0.69 +1.0 2,002,297 + MPMX20_01910 0.71 +0.6 2,002,379 - MPMX20_01910 0.77 +0.5 2,002,384 - MPMX20_01910 0.78 +0.2 2,002,429 + MPMX20_01910 0.82 -0.3 2,002,506 + MPMX20_01910 0.88 -0.5 2,002,516 + MPMX20_01910 0.89 +1.3 2,002,610 - +0.1 2,002,640 + -1.3 2,002,674 - +0.1 2,002,854 + MPMX20_01911 0.30 +0.2 2,002,908 - MPMX20_01911 0.39 +0.9 2,002,989 - MPMX20_01911 0.51 +0.3 2,003,019 + MPMX20_01911 0.56 +0.1 2,003,027 - MPMX20_01911 0.57 +0.4 2,003,050 + MPMX20_01911 0.60 +0.3 2,003,050 + MPMX20_01911 0.60 +1.9 2,003,139 - MPMX20_01911 0.74 -0.1 2,003,158 - MPMX20_01911 0.77 +0.2 2,003,190 + MPMX20_01911 0.82 +0.6 2,003,295 + +0.6 2,003,303 - +0.3 2,003,350 - +1.1 2,003,383 + +0.5 2,003,464 - MPMX20_01912 0.21 +0.5 2,003,503 + MPMX20_01912 0.27 -0.6 2,003,530 - MPMX20_01912 0.31 +0.8 2,003,545 + MPMX20_01912 0.33 -2.5 2,003,553 - MPMX20_01912 0.34 +0.3 2,003,640 + MPMX20_01912 0.46 -0.5 2,003,719 - MPMX20_01912 0.57 +0.1 2,003,721 + MPMX20_01912 0.58 +0.1 2,003,750 - MPMX20_01912 0.62 +0.5 2,003,780 + MPMX20_01912 0.66 +0.3 2,003,857 + MPMX20_01912 0.77 +1.0 2,003,865 - MPMX20_01912 0.78 +0.1 2,003,875 - MPMX20_01912 0.79 -0.2 2,003,883 - MPMX20_01912 0.81 -0.1 2,003,930 + MPMX20_01912 0.87 +0.9 2,003,930 + MPMX20_01912 0.87 -1.8 2,003,930 + MPMX20_01912 0.87 +1.9 2,003,930 + MPMX20_01912 0.87 -0.3 2,003,938 - MPMX20_01912 0.88 -1.4 2,003,938 - MPMX20_01912 0.88 -0.7 2,003,938 - MPMX20_01912 0.88 +0.3 2,004,019 - +0.4 2,004,031 + -0.1 2,004,039 - +0.0 2,004,039 - +0.4 2,004,051 + -0.1 2,004,059 - +0.1 2,004,210 - +1.6 2,004,271 + MPMX20_01913 0.12 -0.1
Or see this region's nucleotide sequence