Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01911

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01910 and MPMX20_01911 are separated by 9 nucleotidesMPMX20_01911 and MPMX20_01912 are separated by 2 nucleotidesMPMX20_01912 and MPMX20_01913 are separated by 140 nucleotides MPMX20_01910: MPMX20_01910 - Acetyl-CoA acetyltransferase, at 2,001,463 to 2,002,644 _01910 MPMX20_01911: MPMX20_01911 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 2,002,654 to 2,003,310 _01911 MPMX20_01912: MPMX20_01912 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 2,003,313 to 2,004,020 _01912 MPMX20_01913: MPMX20_01913 - HTH-type transcriptional regulator GltC, at 2,004,161 to 2,005,084 _01913 Position (kb) 2002 2003 2004Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2001.654 kb on - strand, within MPMX20_01910at 2001.705 kb on + strand, within MPMX20_01910at 2001.731 kb on + strand, within MPMX20_01910at 2001.731 kb on + strand, within MPMX20_01910at 2001.736 kb on + strand, within MPMX20_01910at 2001.739 kb on - strand, within MPMX20_01910at 2001.744 kb on - strand, within MPMX20_01910at 2001.744 kb on - strand, within MPMX20_01910at 2001.744 kb on - strand, within MPMX20_01910at 2001.794 kb on - strand, within MPMX20_01910at 2001.870 kb on + strand, within MPMX20_01910at 2001.894 kb on + strand, within MPMX20_01910at 2001.934 kb on + strand, within MPMX20_01910at 2001.934 kb on + strand, within MPMX20_01910at 2001.942 kb on - strand, within MPMX20_01910at 2001.963 kb on + strand, within MPMX20_01910at 2002.006 kb on - strand, within MPMX20_01910at 2002.029 kb on + strand, within MPMX20_01910at 2002.029 kb on + strand, within MPMX20_01910at 2002.225 kb on + strand, within MPMX20_01910at 2002.233 kb on - strand, within MPMX20_01910at 2002.254 kb on - strand, within MPMX20_01910at 2002.275 kb on + strand, within MPMX20_01910at 2002.275 kb on + strand, within MPMX20_01910at 2002.297 kb on + strand, within MPMX20_01910at 2002.379 kb on - strand, within MPMX20_01910at 2002.384 kb on - strand, within MPMX20_01910at 2002.429 kb on + strand, within MPMX20_01910at 2002.506 kb on + strand, within MPMX20_01910at 2002.516 kb on + strand, within MPMX20_01910at 2002.610 kb on - strandat 2002.640 kb on + strandat 2002.674 kb on - strandat 2002.854 kb on + strand, within MPMX20_01911at 2002.908 kb on - strand, within MPMX20_01911at 2002.989 kb on - strand, within MPMX20_01911at 2003.019 kb on + strand, within MPMX20_01911at 2003.027 kb on - strand, within MPMX20_01911at 2003.050 kb on + strand, within MPMX20_01911at 2003.050 kb on + strand, within MPMX20_01911at 2003.139 kb on - strand, within MPMX20_01911at 2003.158 kb on - strand, within MPMX20_01911at 2003.190 kb on + strand, within MPMX20_01911at 2003.295 kb on + strandat 2003.303 kb on - strandat 2003.350 kb on - strandat 2003.383 kb on + strandat 2003.464 kb on - strand, within MPMX20_01912at 2003.503 kb on + strand, within MPMX20_01912at 2003.530 kb on - strand, within MPMX20_01912at 2003.545 kb on + strand, within MPMX20_01912at 2003.553 kb on - strand, within MPMX20_01912at 2003.640 kb on + strand, within MPMX20_01912at 2003.719 kb on - strand, within MPMX20_01912at 2003.721 kb on + strand, within MPMX20_01912at 2003.750 kb on - strand, within MPMX20_01912at 2003.780 kb on + strand, within MPMX20_01912at 2003.857 kb on + strand, within MPMX20_01912at 2003.865 kb on - strand, within MPMX20_01912at 2003.875 kb on - strand, within MPMX20_01912at 2003.883 kb on - strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.938 kb on - strand, within MPMX20_01912at 2003.938 kb on - strand, within MPMX20_01912at 2003.938 kb on - strand, within MPMX20_01912at 2004.019 kb on - strandat 2004.031 kb on + strandat 2004.039 kb on - strandat 2004.039 kb on - strandat 2004.051 kb on + strandat 2004.059 kb on - strandat 2004.210 kb on - strandat 2004.271 kb on + strand, within MPMX20_01913

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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2,001,654 - MPMX20_01910 0.16 +1.0
2,001,705 + MPMX20_01910 0.20 +0.3
2,001,731 + MPMX20_01910 0.23 -0.1
2,001,731 + MPMX20_01910 0.23 -1.0
2,001,736 + MPMX20_01910 0.23 -0.1
2,001,739 - MPMX20_01910 0.23 +0.4
2,001,744 - MPMX20_01910 0.24 -0.4
2,001,744 - MPMX20_01910 0.24 +0.1
2,001,744 - MPMX20_01910 0.24 +0.0
2,001,794 - MPMX20_01910 0.28 +0.2
2,001,870 + MPMX20_01910 0.34 +1.3
2,001,894 + MPMX20_01910 0.36 -1.6
2,001,934 + MPMX20_01910 0.40 -0.5
2,001,934 + MPMX20_01910 0.40 -1.1
2,001,942 - MPMX20_01910 0.41 -1.0
2,001,963 + MPMX20_01910 0.42 +0.8
2,002,006 - MPMX20_01910 0.46 +3.1
2,002,029 + MPMX20_01910 0.48 -0.6
2,002,029 + MPMX20_01910 0.48 +1.6
2,002,225 + MPMX20_01910 0.64 +0.2
2,002,233 - MPMX20_01910 0.65 +0.1
2,002,254 - MPMX20_01910 0.67 +0.4
2,002,275 + MPMX20_01910 0.69 -0.2
2,002,275 + MPMX20_01910 0.69 +1.0
2,002,297 + MPMX20_01910 0.71 +0.6
2,002,379 - MPMX20_01910 0.77 +0.5
2,002,384 - MPMX20_01910 0.78 +0.2
2,002,429 + MPMX20_01910 0.82 -0.3
2,002,506 + MPMX20_01910 0.88 -0.5
2,002,516 + MPMX20_01910 0.89 +1.3
2,002,610 - +0.1
2,002,640 + -1.3
2,002,674 - +0.1
2,002,854 + MPMX20_01911 0.30 +0.2
2,002,908 - MPMX20_01911 0.39 +0.9
2,002,989 - MPMX20_01911 0.51 +0.3
2,003,019 + MPMX20_01911 0.56 +0.1
2,003,027 - MPMX20_01911 0.57 +0.4
2,003,050 + MPMX20_01911 0.60 +0.3
2,003,050 + MPMX20_01911 0.60 +1.9
2,003,139 - MPMX20_01911 0.74 -0.1
2,003,158 - MPMX20_01911 0.77 +0.2
2,003,190 + MPMX20_01911 0.82 +0.6
2,003,295 + +0.6
2,003,303 - +0.3
2,003,350 - +1.1
2,003,383 + +0.5
2,003,464 - MPMX20_01912 0.21 +0.5
2,003,503 + MPMX20_01912 0.27 -0.6
2,003,530 - MPMX20_01912 0.31 +0.8
2,003,545 + MPMX20_01912 0.33 -2.5
2,003,553 - MPMX20_01912 0.34 +0.3
2,003,640 + MPMX20_01912 0.46 -0.5
2,003,719 - MPMX20_01912 0.57 +0.1
2,003,721 + MPMX20_01912 0.58 +0.1
2,003,750 - MPMX20_01912 0.62 +0.5
2,003,780 + MPMX20_01912 0.66 +0.3
2,003,857 + MPMX20_01912 0.77 +1.0
2,003,865 - MPMX20_01912 0.78 +0.1
2,003,875 - MPMX20_01912 0.79 -0.2
2,003,883 - MPMX20_01912 0.81 -0.1
2,003,930 + MPMX20_01912 0.87 +0.9
2,003,930 + MPMX20_01912 0.87 -1.8
2,003,930 + MPMX20_01912 0.87 +1.9
2,003,930 + MPMX20_01912 0.87 -0.3
2,003,938 - MPMX20_01912 0.88 -1.4
2,003,938 - MPMX20_01912 0.88 -0.7
2,003,938 - MPMX20_01912 0.88 +0.3
2,004,019 - +0.4
2,004,031 + -0.1
2,004,039 - +0.0
2,004,039 - +0.4
2,004,051 + -0.1
2,004,059 - +0.1
2,004,210 - +1.6
2,004,271 + MPMX20_01913 0.12 -0.1

Or see this region's nucleotide sequence