Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01106

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01105 and MPMX20_01106 are separated by 219 nucleotidesMPMX20_01106 and MPMX20_01107 are separated by 1 nucleotides MPMX20_01105: MPMX20_01105 - PTS system glucose-specific EIICBA component, at 1,164,397 to 1,165,896 _01105 MPMX20_01106: MPMX20_01106 - putative protein YbcJ, at 1,166,116 to 1,166,328 _01106 MPMX20_01107: MPMX20_01107 - Bifunctional protein FolD protein, at 1,166,330 to 1,167,196 _01107 Position (kb) 1166 1167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1165.182 kb on - strand, within MPMX20_01105at 1165.219 kb on - strand, within MPMX20_01105at 1165.219 kb on - strand, within MPMX20_01105at 1165.244 kb on + strand, within MPMX20_01105at 1165.262 kb on - strand, within MPMX20_01105at 1165.275 kb on + strand, within MPMX20_01105at 1165.280 kb on + strand, within MPMX20_01105at 1165.280 kb on + strand, within MPMX20_01105at 1165.288 kb on - strand, within MPMX20_01105at 1165.303 kb on + strand, within MPMX20_01105at 1165.390 kb on - strand, within MPMX20_01105at 1165.478 kb on - strand, within MPMX20_01105at 1165.609 kb on + strand, within MPMX20_01105at 1165.617 kb on - strand, within MPMX20_01105at 1165.700 kb on - strand, within MPMX20_01105at 1165.701 kb on - strand, within MPMX20_01105at 1165.737 kb on + strand, within MPMX20_01105at 1165.777 kb on - strandat 1165.887 kb on - strandat 1165.893 kb on - strandat 1165.893 kb on - strandat 1166.070 kb on - strandat 1166.076 kb on - strandat 1166.121 kb on - strandat 1166.188 kb on + strand, within MPMX20_01106at 1166.196 kb on - strand, within MPMX20_01106at 1166.201 kb on + strand, within MPMX20_01106at 1166.201 kb on - strand, within MPMX20_01106at 1166.209 kb on - strand, within MPMX20_01106at 1166.234 kb on + strand, within MPMX20_01106at 1166.297 kb on - strand, within MPMX20_01106at 1166.328 kb on + strandat 1166.346 kb on - strandat 1166.348 kb on + strandat 1166.354 kb on - strandat 1166.364 kb on - strandat 1167.210 kb on - strandat 1167.268 kb on + strandat 1167.268 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.270 kb on + strandat 1167.277 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.278 kb on - strandat 1167.299 kb on - strandat 1167.303 kb on + strandat 1167.311 kb on - strandat 1167.314 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
remove
1,165,182 - MPMX20_01105 0.52 +0.4
1,165,219 - MPMX20_01105 0.55 +0.2
1,165,219 - MPMX20_01105 0.55 +0.9
1,165,244 + MPMX20_01105 0.56 -0.8
1,165,262 - MPMX20_01105 0.58 -0.6
1,165,275 + MPMX20_01105 0.59 -0.5
1,165,280 + MPMX20_01105 0.59 -0.1
1,165,280 + MPMX20_01105 0.59 +1.1
1,165,288 - MPMX20_01105 0.59 +0.3
1,165,303 + MPMX20_01105 0.60 +0.4
1,165,390 - MPMX20_01105 0.66 -0.2
1,165,478 - MPMX20_01105 0.72 -0.3
1,165,609 + MPMX20_01105 0.81 +0.1
1,165,617 - MPMX20_01105 0.81 +0.1
1,165,700 - MPMX20_01105 0.87 -0.3
1,165,701 - MPMX20_01105 0.87 -0.1
1,165,737 + MPMX20_01105 0.89 +0.4
1,165,777 - +0.2
1,165,887 - -0.1
1,165,893 - -2.9
1,165,893 - +0.2
1,166,070 - +0.7
1,166,076 - -0.6
1,166,121 - +0.7
1,166,188 + MPMX20_01106 0.34 -0.2
1,166,196 - MPMX20_01106 0.38 +1.1
1,166,201 + MPMX20_01106 0.40 -2.2
1,166,201 - MPMX20_01106 0.40 +1.9
1,166,209 - MPMX20_01106 0.44 -0.1
1,166,234 + MPMX20_01106 0.55 +0.2
1,166,297 - MPMX20_01106 0.85 +0.7
1,166,328 + -0.1
1,166,346 - -0.8
1,166,348 + -2.0
1,166,354 - +0.2
1,166,364 - -0.3
1,167,210 - -0.9
1,167,268 + +0.1
1,167,268 + -0.5
1,167,270 + -0.3
1,167,270 + -0.6
1,167,270 + +0.4
1,167,270 + +0.2
1,167,270 + -1.0
1,167,270 + -0.6
1,167,270 + +0.5
1,167,270 + +1.4
1,167,270 + -0.8
1,167,270 + -0.5
1,167,270 + +0.1
1,167,270 + -0.1
1,167,270 + +0.1
1,167,270 + +0.7
1,167,270 + -1.1
1,167,270 + -0.1
1,167,270 + -0.3
1,167,270 + +1.9
1,167,270 + +0.0
1,167,270 + -1.2
1,167,270 + +0.1
1,167,270 + -1.8
1,167,270 + +0.8
1,167,270 + +0.5
1,167,270 + +0.8
1,167,270 + +0.0
1,167,270 + +0.3
1,167,270 + +0.2
1,167,270 + -0.5
1,167,270 + -0.7
1,167,270 + +0.1
1,167,270 + -0.9
1,167,270 + -0.4
1,167,270 + +0.3
1,167,270 + -1.1
1,167,277 - +1.0
1,167,278 - -0.1
1,167,278 - +1.4
1,167,278 - +0.3
1,167,278 - +0.5
1,167,278 - -0.8
1,167,278 - -0.9
1,167,278 - +0.4
1,167,278 - -0.0
1,167,278 - +0.4
1,167,278 - +1.9
1,167,278 - +1.0
1,167,278 - +0.3
1,167,278 - -0.4
1,167,278 - -0.4
1,167,278 - -0.1
1,167,278 - -0.4
1,167,278 - +0.2
1,167,278 - -0.2
1,167,278 - +0.5
1,167,299 - -0.2
1,167,303 + -0.4
1,167,311 - +1.2
1,167,314 + +0.0

Or see this region's nucleotide sequence