Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00894

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00893 and MPMX20_00894 are separated by 112 nucleotidesMPMX20_00894 and MPMX20_00895 are separated by 74 nucleotidesMPMX20_00895 and MPMX20_00896 are separated by 52 nucleotides MPMX20_00893: MPMX20_00893 - Inner membrane transport protein YdhP, at 941,513 to 942,688 _00893 MPMX20_00894: MPMX20_00894 - hypothetical protein, at 942,801 to 943,625 _00894 MPMX20_00895: MPMX20_00895 - putative methyltransferase YcgJ, at 943,700 to 944,473 _00895 MPMX20_00896: MPMX20_00896 - Membrane-bound lytic murein transglycosylase D, at 944,526 to 945,890 _00896 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.812 kb on + strand, within MPMX20_00893at 941.821 kb on + strand, within MPMX20_00893at 941.841 kb on - strand, within MPMX20_00893at 941.863 kb on - strand, within MPMX20_00893at 941.877 kb on - strand, within MPMX20_00893at 941.963 kb on + strand, within MPMX20_00893at 942.038 kb on + strand, within MPMX20_00893at 942.064 kb on + strand, within MPMX20_00893at 942.072 kb on + strand, within MPMX20_00893at 942.091 kb on + strand, within MPMX20_00893at 942.099 kb on - strand, within MPMX20_00893at 942.099 kb on - strand, within MPMX20_00893at 942.106 kb on - strand, within MPMX20_00893at 942.107 kb on + strand, within MPMX20_00893at 942.147 kb on + strand, within MPMX20_00893at 942.148 kb on - strand, within MPMX20_00893at 942.251 kb on - strand, within MPMX20_00893at 942.303 kb on + strand, within MPMX20_00893at 942.322 kb on - strand, within MPMX20_00893at 942.335 kb on + strand, within MPMX20_00893at 942.394 kb on + strand, within MPMX20_00893at 942.407 kb on - strand, within MPMX20_00893at 942.435 kb on + strand, within MPMX20_00893at 942.442 kb on - strand, within MPMX20_00893at 942.456 kb on - strand, within MPMX20_00893at 942.552 kb on - strand, within MPMX20_00893at 942.589 kb on - strandat 942.696 kb on - strandat 942.769 kb on + strandat 942.769 kb on + strandat 942.777 kb on - strandat 942.804 kb on - strandat 942.856 kb on - strandat 942.886 kb on - strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.974 kb on - strand, within MPMX20_00894at 943.033 kb on + strand, within MPMX20_00894at 943.066 kb on + strand, within MPMX20_00894at 943.074 kb on - strand, within MPMX20_00894at 943.076 kb on + strand, within MPMX20_00894at 943.081 kb on + strand, within MPMX20_00894at 943.089 kb on - strand, within MPMX20_00894at 943.154 kb on + strand, within MPMX20_00894at 943.238 kb on + strand, within MPMX20_00894at 943.308 kb on - strand, within MPMX20_00894at 943.308 kb on - strand, within MPMX20_00894at 943.320 kb on - strand, within MPMX20_00894at 943.325 kb on - strand, within MPMX20_00894at 943.325 kb on - strand, within MPMX20_00894at 943.401 kb on + strand, within MPMX20_00894at 943.549 kb on + strandat 943.607 kb on + strandat 943.647 kb on + strandat 943.649 kb on - strandat 943.712 kb on - strandat 943.718 kb on + strandat 943.726 kb on - strandat 943.726 kb on - strandat 943.753 kb on + strandat 943.758 kb on + strandat 943.763 kb on + strandat 943.765 kb on + strandat 943.773 kb on + strandat 943.778 kb on + strand, within MPMX20_00895at 943.781 kb on - strand, within MPMX20_00895at 943.799 kb on - strand, within MPMX20_00895at 943.827 kb on - strand, within MPMX20_00895at 943.850 kb on + strand, within MPMX20_00895at 943.914 kb on - strand, within MPMX20_00895at 943.914 kb on - strand, within MPMX20_00895at 943.952 kb on - strand, within MPMX20_00895at 943.991 kb on + strand, within MPMX20_00895at 943.996 kb on + strand, within MPMX20_00895at 943.999 kb on - strand, within MPMX20_00895at 944.009 kb on + strand, within MPMX20_00895at 944.070 kb on + strand, within MPMX20_00895at 944.072 kb on + strand, within MPMX20_00895at 944.107 kb on - strand, within MPMX20_00895at 944.195 kb on - strand, within MPMX20_00895at 944.246 kb on + strand, within MPMX20_00895at 944.269 kb on + strand, within MPMX20_00895at 944.332 kb on - strand, within MPMX20_00895at 944.345 kb on + strand, within MPMX20_00895at 944.377 kb on - strand, within MPMX20_00895at 944.377 kb on - strand, within MPMX20_00895at 944.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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941,812 + MPMX20_00893 0.25 -0.3
941,821 + MPMX20_00893 0.26 -0.1
941,841 - MPMX20_00893 0.28 +0.5
941,863 - MPMX20_00893 0.30 -1.0
941,877 - MPMX20_00893 0.31 +0.0
941,963 + MPMX20_00893 0.38 +0.1
942,038 + MPMX20_00893 0.45 -0.3
942,064 + MPMX20_00893 0.47 +0.0
942,072 + MPMX20_00893 0.48 +0.1
942,091 + MPMX20_00893 0.49 -0.7
942,099 - MPMX20_00893 0.50 -0.4
942,099 - MPMX20_00893 0.50 +0.1
942,106 - MPMX20_00893 0.50 -0.0
942,107 + MPMX20_00893 0.51 +0.3
942,147 + MPMX20_00893 0.54 -2.1
942,148 - MPMX20_00893 0.54 +0.7
942,251 - MPMX20_00893 0.63 -2.8
942,303 + MPMX20_00893 0.67 -0.6
942,322 - MPMX20_00893 0.69 -0.4
942,335 + MPMX20_00893 0.70 +0.1
942,394 + MPMX20_00893 0.75 +0.1
942,407 - MPMX20_00893 0.76 -1.1
942,435 + MPMX20_00893 0.78 +1.6
942,442 - MPMX20_00893 0.79 -0.5
942,456 - MPMX20_00893 0.80 +1.3
942,552 - MPMX20_00893 0.88 +0.9
942,589 - -0.5
942,696 - -0.5
942,769 + -0.8
942,769 + -0.4
942,777 - -0.0
942,804 - -0.3
942,856 - +0.2
942,886 - MPMX20_00894 0.10 +0.4
942,933 + MPMX20_00894 0.16 +0.6
942,933 + MPMX20_00894 0.16 +0.1
942,933 + MPMX20_00894 0.16 +0.6
942,933 + MPMX20_00894 0.16 +0.9
942,933 + MPMX20_00894 0.16 +0.8
942,933 + MPMX20_00894 0.16 -0.4
942,933 + MPMX20_00894 0.16 -0.2
942,933 + MPMX20_00894 0.16 +0.3
942,933 + MPMX20_00894 0.16 +0.2
942,933 + MPMX20_00894 0.16 -0.0
942,933 + MPMX20_00894 0.16 +0.6
942,933 + MPMX20_00894 0.16 +1.1
942,933 + MPMX20_00894 0.16 +0.2
942,941 - MPMX20_00894 0.17 +0.4
942,941 - MPMX20_00894 0.17 +1.4
942,941 - MPMX20_00894 0.17 +0.6
942,941 - MPMX20_00894 0.17 -1.6
942,941 - MPMX20_00894 0.17 +1.7
942,941 - MPMX20_00894 0.17 +0.6
942,941 - MPMX20_00894 0.17 +0.9
942,941 - MPMX20_00894 0.17 +0.0
942,941 - MPMX20_00894 0.17 -1.0
942,941 - MPMX20_00894 0.17 -0.2
942,941 - MPMX20_00894 0.17 -0.0
942,941 - MPMX20_00894 0.17 -0.3
942,974 - MPMX20_00894 0.21 +0.4
943,033 + MPMX20_00894 0.28 +0.5
943,066 + MPMX20_00894 0.32 +0.7
943,074 - MPMX20_00894 0.33 -0.3
943,076 + MPMX20_00894 0.33 +0.0
943,081 + MPMX20_00894 0.34 +0.1
943,089 - MPMX20_00894 0.35 +0.6
943,154 + MPMX20_00894 0.43 +1.1
943,238 + MPMX20_00894 0.53 -0.4
943,308 - MPMX20_00894 0.61 +1.5
943,308 - MPMX20_00894 0.61 +0.9
943,320 - MPMX20_00894 0.63 +0.7
943,325 - MPMX20_00894 0.64 +0.1
943,325 - MPMX20_00894 0.64 -0.3
943,401 + MPMX20_00894 0.73 +0.1
943,549 + -0.0
943,607 + -0.2
943,647 + +1.0
943,649 - +1.9
943,712 - -0.5
943,718 + +0.4
943,726 - +0.1
943,726 - +0.3
943,753 + -1.7
943,758 + -0.0
943,763 + -0.3
943,765 + +0.5
943,773 + +0.1
943,778 + MPMX20_00895 0.10 +0.5
943,781 - MPMX20_00895 0.10 +1.7
943,799 - MPMX20_00895 0.13 -0.4
943,827 - MPMX20_00895 0.16 +0.1
943,850 + MPMX20_00895 0.19 +0.6
943,914 - MPMX20_00895 0.28 +0.3
943,914 - MPMX20_00895 0.28 +0.1
943,952 - MPMX20_00895 0.33 +0.3
943,991 + MPMX20_00895 0.38 +0.4
943,996 + MPMX20_00895 0.38 +0.9
943,999 - MPMX20_00895 0.39 +0.1
944,009 + MPMX20_00895 0.40 -0.4
944,070 + MPMX20_00895 0.48 -0.2
944,072 + MPMX20_00895 0.48 -0.3
944,107 - MPMX20_00895 0.53 -0.9
944,195 - MPMX20_00895 0.64 -0.2
944,246 + MPMX20_00895 0.71 +0.8
944,269 + MPMX20_00895 0.74 +0.8
944,332 - MPMX20_00895 0.82 +1.3
944,345 + MPMX20_00895 0.83 +0.2
944,377 - MPMX20_00895 0.87 +0.2
944,377 - MPMX20_00895 0.87 +0.8
944,411 - -1.2

Or see this region's nucleotide sequence